Retrospective Spatio-Temporal Dynamics of Dengue Virus 1, 2 and 4 in Paraguay
Abstract
:1. Introduction
2. Materials and Methods
3. Results
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Accession Number | Virus | Lineages | Country | Ct | City | Collection Date | Date Onset Symptoms | Gender | Age | Coverage |
---|---|---|---|---|---|---|---|---|---|---|
OQ567774 | DENV-1 | Genotype V | PY | 24 | Salto Del Guaira | 27-Feb-2014 | 27-Feb-2014 | M | 27 | 88.7 |
OQ567775 | DENV-1 | Genotype V | PY | 22 | Santa Rosa Del Aguaray | 23-Mar-2015 | 20-Mar-2015 | M | 28 | 88.5 |
OQ567776 | DENV-1 | Genotype V | PY | 20 | Santa Rosa Del Aguaray | 20-Mar-2015 | 18-Mar-2015 | F | 41 | 93.6 |
OQ567777 | DENV-1 | Genotype V | PY | 20 | Santa Rosa Del Aguaray | 26-Mar-2015 | 25-Mar-2015 | F | 27 | 93.2 |
OQ567778 | DENV-1 | Genotype V | PY | 24 | Carapegua | 13-May-2015 | 12-May-2015 | M | 43 | 89.3 |
OQ567779 | DENV-1 | Genotype V | PY | 26 | Caazapa | 2-Jun-2015 | 31-May-2015 | M | 46 | 89.2 |
OQ567780 | DENV-1 | Genotype V | PY | 18 | Ciudad del Este | 15-Dec-2015 | 14-Dec-2015 | M | 41 | 93 |
OQ567781 | DENV-1 | Genotype V | PY | 19 | Asuncion | 18-Dec-2015 | 17-Dec-2015 | F | 22 | 93.4 |
OQ567782 | DENV-1 | Genotype V | PY | 20 | Concepcion | 17-Dec-2015 | 14-Dec-2015 | F | 36 | 94.4 |
OQ567783 | DENV-1 | Genotype V | PY | 22 | Concepcion | 23-Dec-2015 | 21-Dec-2015 | F | 53 | 88.8 |
OQ567784 | DENV-1 | Genotype V | PY | 21 | Benjamin Aceval | 21-Dec-2015 | 20-Dec-2015 | M | SD | 88.8 |
OQ567785 | DENV-1 | Genotype V | PY | 25 | San Juan Nepomuceno | 24-Dec-2015 | 22-Dec-2015 | F | 19 | 88.7 |
OQ567786 | DENV-1 | Genotype V | PY | 27 | Itapua | 29-Jan-2016 | 26-Jan-2016 | M | 18 | 88.5 |
OQ567787 | DENV-1 | Genotype V | PY | 22 | Pilar | 4-Feb-2016 | 2-Feb-2016 | F | 24 | 88.8 |
OQ567788 | DENV-1 | Genotype V | PY | 25 | Pilar | 2-Apr-2016 | 2-Mar-2016 | F | 24 | 92.9 |
OQ567789 | DENV-1 | Genotype V | PY | 26 | Yatytay | 2-Jan-2016 | 2-Jan-2016 | F | 83 | 92.9 |
OQ567790 | DENV-1 | Genotype V | PY | 26 | San Lorenzo | 24-Jan-2016 | 23-Jan-2016 | F | 23 | 92.6 |
OQ567791 | DENV-1 | Genotype V | PY | 28 | Asuncion | 10-Feb-2016 | 2-Jun-2016 | F | 28 | 89 |
OQ567792 | DENV-1 | Genotype V | PY | 26 | Carapegua | 2-Sep-2016 | 2-Aug-2016 | M | 18 | 92.7 |
OQ567793 | DENV-1 | Genotype V | PY | 21 | Pirayu | 2-Sep-2016 | 2-Jun-2016 | F | 40 | 94.1 |
OQ567794 | DENV-1 | Genotype V | PY | 28 | Coronel Oviedo | 2-Oct-2016 | 2-Aug-2016 | F | 37 | 84.1 |
OQ567795 | DENV-1 | Genotype V | PY | 22 | Itaugua | 14-Feb-2016 | 14-Feb-2016 | F | 23 | 93.1 |
OQ567796 | DENV-1 | Genotype V | PY | 26 | Mariscal Estigarribia | 3-Jan-2017 | 28-Feb-2017 | F | 61 | 92.9 |
OQ567797 | DENV-1 | Genotype V | PY | 27 | Asuncion | 29-Mar-2017 | 28-Mar-2017 | F | 29 | 89.2 |
OQ567798 | DENV-1 | Genotype V | PY | 21 | Paraguari | 26-Apr-2017 | 25-Apr-2017 | F | 28 | 89.3 |
OQ567799 | DENV-1 | Genotype V | PY | 21 | Tte. Irala Fernandez | 25-Apr-2017 | 23-Apr-2017 | F | 44 | 93.3 |
OQ567800 | DENV-1 | Genotype V | PY | 24 | Filadeflia | 27-Mar-2017 | 26-Mar-2017 | M | 25 | 92.9 |
OQ567801 | DENV-1 | Genotype V | PY | 27 | San Lorenzo | 29-Apr-2017 | 26-Apr-2017 | F | 25 | 88.9 |
OQ567802 | DENV-1 | Genotype V | PY | 27 | Capitan Bado | 22-Mar-2022 | 21-Mar-2022 | F | 18 | 93 |
OQ567803 | DENV-1 | Genotype V | PY | 22 | Capitan Bado | 28-Mar-2022 | 26-Mar-2022 | M | 18 | 89.6 |
OQ567804 | DENV-1 | Genotype V | PY | 25 | Capitan Bado | 4-Apr-2022 | 1-Apr-2022 | M | 56 | 88.1 |
OQ567805 | DENV-1 | Genotype V | PY | 26 | Guarambare | 25-Mar-2022 | 23-Mar-2022 | M | 41 | 94.6 |
OQ567806 | DENV-1 | Genotype V | PY | 26 | Capitan Bado | 4-Dec-2022 | 11-Apr-2022 | F | 57 | 91.8 |
OQ567807 | DENV-1 | Genotype V | PY | 28 | Capitan Bado | 19-Apr-2022 | 15-Apr-2022 | M | 52 | 71 |
OQ567808 | DENV-1 | Genotype V | PY | 26 | Capitan Bado | 18-Apr-2022 | 16-Apr-2022 | M | 20 | 75.1 |
OQ567809 | DENV-1 | Genotype V | PY | 21 | Capitan Bado | 21-Apr-2022 | 19-Apr-2022 | F | 11 | 83.9 |
OQ567810 | DENV-1 | Genotype V | PY | 28 | Capitan Bado | 22-Apr-2022 | 20-Apr-2022 | M | 36 | 88.8 |
OQ567811 | DENV-1 | Genotype V | PY | 22 | Capitan Bado | 21-Apr-2022 | 17-Apr-2022 | M | 61 | 93.8 |
OQ567812 | DENV-1 | Genotype V | PY | 26 | Capitan Bado | 20-Apr-2022 | 16-Apr-2022 | M | 33 | 94.2 |
OQ567813 | DENV-1 | Genotype V | PY | 27 | Capitan Bado | 20-Apr-2022 | 17-Apr-2022 | M | 61 | 93.4 |
OQ567814 | DENV-1 | Genotype V | PY | 21 | Encarnacion | 4-May-2022 | 2-May-2022 | F | 18 | 94.2 |
OQ567815 | DENV-1 | Genotype V | PY | 21 | Villa Ygatimi | 10-May-2022 | 7-May-2022 | F | 62 | 88.3 |
OQ567816 | DENV-1 | Genotype V | PY | 24 | Capitan Bado | 4-May-2022 | 2-May-2022 | F | 18 | 79.4 |
OQ567817 | DENV-1 | Genotype V | PY | 27 | Pedro Juan Caballero | 5-Jun-2022 | 1-Jun-2022 | F | 37 | 93.5 |
OQ567818 | DENV-1 | Genotype V | PY | 27 | Salto del Guaira | 2-Jun-2022 | 1-Jun-2022 | F | 14 | 94.2 |
OQ567819 | DENV-1 | Genotype V | PY | 22 | Salto del Guaira | 20-Jun-2022 | 16-Jun-2022 | M | 72 | 93 |
OQ567820 | DENV-1 | Genotype V | PY | 25 | Capitan Bado | 14-Jun-2022 | 11-Jun-2022 | F | 17 | 84.7 |
OQ567821 | DENV-2 | Genotype III | PY | 26 | Villarrica | 2-Jul-2021 | 1-Jul-2021 | M | 29 | 75.3 |
OQ567822 | DENV-2 | Genotype III | PY | 26 | Mariano Roque Alonso | 10-Jul-2021 | 10-Jul-2021 | F | 21 | 70 |
OQ567823 | DENV-2 | Genotype III | PY | 28 | Coronel Oviedo | 28-Mar-2022 | 26-Mar-2022 | M | 35 | 90.9 |
OQ567824 | DENV-2 | Genotype III | PY | 26 | Coronel Oviedo | 27-Mar-2022 | 24-Mar-2022 | M | 49 | 93.1 |
OQ567825 | DENV-2 | Genotype III | PY | 21 | Coronel Oviedo | 29-Mar-2022 | 27-Mar-2022 | M | 23 | 91.1 |
OQ567826 | DENV-2 | Genotype III | PY | 28 | Coronel Oviedo | 5-Apr-2022 | 2-Apr-2022 | M | 28 | 93.1 |
OQ567827 | DENV-2 | Genotype III | PY | 22 | Coronel Oviedo | 11-Apr-2022 | 9-Apr-2022 | F | 33 | 87.2 |
OQ567828 | DENV-2 | Genotype III | PY | 26 | Coronel Oviedo | 7-Apr-2022 | 5-Apr-2022 | F | 29 | 78.6 |
OQ567829 | DENV-2 | Genotype III | PY | 27 | Coronel Oviedo | 17-Apr-2022 | 14-Apr-2022 | M | 22 | 93 |
OQ567830 | DENV-2 | Genotype III | PY | 21 | Coronel Oviedo | 18-Apr-2022 | 16-Apr-2022 | F | 48 | 93.2 |
OQ567831 | DENV-2 | Genotype III | PY | 21 | Caaguazu | 22-Apr-2022 | 20-Apr-2022 | M | 61 | 93.6 |
OQ567832 | DENV-2 | Genotype III | PY | 24 | Coronel Oviedo | 28-Apr-2022 | 26-Apr-2022 | F | 45 | 71.1 |
OQ567833 | DENV-2 | Genotype III | PY | 27 | Coronel Oviedo | 2-May-2022 | 1-May-2022 | M | 51 | 93.3 |
OQ567834 | DENV-2 | Genotype III | PY | 27 | Coronel Oviedo | 27-Apr-2022 | 25-Apr-2022 | M | 59 | 84.4 |
OQ567835 | DENV-2 | Genotype III | PY | 22 | Coronel Oviedo | 6-May-2022 | 3-May-2022 | F | 42 | 90.7 |
OQ567836 | DENV-2 | Genotype III | PY | 25 | Coronel Oviedo | 9-May-2022 | 5-May-2022 | M | 51 | 89.8 |
OQ567837 | DENV-2 | Genotype III | PY | 26 | Coronel Oviedo | 8-May-2022 | 6-May-2022 | F | 43 | 86.8 |
OQ567838 | DENV-2 | Genotype III | PY | 26 | Coronel Oviedo | 22-May-2022 | 18-May-2022 | F | 37 | 89.8 |
OQ567839 | DENV-2 | Genotype III | PY | 28 | Coronel Oviedo | 29-May-2022 | 19-May-2022 | F | 26 | 92 |
OQ567840 | DENV-2 | Genotype III | PY | 26 | Repatriacion | 24-Jun-2022 | 23-Jun-2022 | F | 44 | 88.4 |
OQ567841 | DENV-2 | Genotype III | PY | 21 | Benjamin Aceval | 23-Feb-2022 | 22-Feb-2022 | M | 14 | 78.8 |
OQ567842 | DENV-2 | Genotype III | PY | 28 | Coronel Oviedo | 22-Mar-2022 | 20-Mar-2022 | F | 46 | 92.9 |
OQ567843 | DENV-2 | Genotype III | PY | 22 | Coronel Oviedo | 5-May-2022 | 4-May-2022 | M | 12 | 70.2 |
OQ567844 | DENV-2 | Genotype III | PY | 26 | Coronel Oviedo | 4-May-2022 | 4-May-2022 | M | 24 | 93.2 |
OQ567845 | DENV-2 | Genotype III | PY | 27 | Capiata | 27-Apr-2022 | 24-Apr-2022 | F | 20 | 87.2 |
OQ567846 | DENV-2 | Genotype III | PY | 21 | Presidente Franco | 24-Mar-2021 | 22-Mar-2021 | F | 61 | 92.8 |
OQ567847 | DENV-2 | Genotype III | PY | 21 | Encarnacion | 14-Apr-2021 | 4-Dec-2021 | M | 59 | 92.7 |
OQ567848 | DENV-4 | Genotype II | PY | 24 | Coronel Oviedo | 7-Mar-2016 | 7-Mar-2016 | F | 37 | 91.9 |
OQ567849 | DENV-4 | Genotype II | PY | 27 | Asuncion | 27-Jan-2020 | 20-Jan-2024 | F | 47 | 92.2 |
OQ567850 | DENV-4 | Genotype II | PY | 24 | Asuncion | 30-Jan-2020 | 28-Jan-2020 | F | 14 | 92 |
OQ567851 | DENV-4 | Genotype II | PY | 28 | Filadelfia | 1-Feb-2020 | 1-Feb-2020 | M | 11 | 92 |
OQ567852 | DENV-4 | Genotype II | PY | 20 | Lambare | 4-Feb-2020 | 2-Apr-2020 | M | 29 | 92.5 |
OQ567853 | DENV-4 | Genotype II | PY | 27 | Asuncion | 6-Feb-2020 | 4-Feb-2020 | M | 30 | 91.7 |
OQ567854 | DENV-4 | Genotype II | PY | 23 | Pilar | 4-Feb-2020 | 4-Feb-2020 | F | 60 | 92 |
OQ567855 | DENV-4 | Genotype II | PY | 26 | Itaugua | 7-Feb-2020 | 3-Feb-2020 | F | 40 | 92.5 |
OQ567856 | DENV-4 | Genotype II | PY | 26 | Itagua | 10-Feb-2020 | 8-Feb-2020 | F | 77 | 92.5 |
OQ567857 | DENV-4 | Genotype II | PY | 29 | Obligado | 13-Feb-2020 | 2-Nov-2020 | F | 4 | 92 |
OQ567858 | DENV-4 | Genotype II | PY | 26 | Itagua | 1-Jan-2020 | 31-Dec-2019 | F | 29 | 92 |
OQ567859 | DENV-4 | Genotype II | PY | 21 | Lambare | 7-Jan-2020 | 1-May-2020 | M | 31 | 93 |
OQ567860 | DENV-4 | Genotype II | PY | 25 | Villa Elisa | 7-Jan-2020 | 1-Apr-2020 | F | 32 | 92.6 |
OQ567861 | DENV-4 | Genotype II | PY | 17 | Nemby | 9-Jan-2020 | 1-Sep-2020 | M | 1M | 92.5 |
OQ567862 | DENV-4 | Genotype II | PY | 27 | Itagua | 12-Jan-2020 | 1-Nov-2020 | F | 30 | 91.8 |
OQ567863 | DENV-4 | Genotype II | PY | 30 | Nemby | 13-Jan-2020 | 1-Dec-2020 | F | 29 | 91.9 |
OQ567864 | DENV-4 | Genotype II | PY | 21 | Trinidad | 13-Jan-2020 | 13-Jan-2020 | M | 47 | 92.4 |
OQ567865 | DENV-4 | Genotype II | PY | 25 | Coronel Oviedo | 11-Jan-2020 | 1-Nov-2020 | M | 59 | 92.6 |
OQ567866 | DENV-4 | Genotype II | PY | 30 | San Lorenzo | 12-Jan-2020 | 1-Dec-2020 | F | 77 | 92 |
OQ567867 | DENV-4 | Genotype II | PY | 23 | San Lorenzo | 17-Jan-2020 | 15-Jan-2020 | F | 37 | 92.4 |
OQ567868 | DENV-4 | Genotype II | PY | 23 | Ypane | 18-Jan-2020 | 12-Jan-2020 | M | 25 | 92.1 |
OQ567869 | DENV-4 | Genotype II | PY | 19 | San Lorenzo | 15-Jan-2020 | 11-Jan-2020 | M | 5M | 92.7 |
OQ567870 | DENV-4 | Genotype II | PY | 26 | Itagua | 17-Jan-2020 | 12-Jan-2020 | F | 18 | 92.9 |
OQ567871 | DENV-4 | Genotype II | PY | 20 | San Lorenzo | 20-Jan-2020 | 15-Jan-2020 | F | 1 | 92.5 |
OQ567872 | DENV-4 | Genotype II | PY | 30 | Pilar | 22-Feb-2021 | 19-Feb-2021 | F | 7 | 92.1 |
Variable 1 | Variable 2 | Correlation (Spearman’s Coefficient) |
---|---|---|
index p | total cases * | 0.55 |
temperature | total cases * | 0.37 |
humidity | total cases * | 0.50 |
precipitation | total cases * | 0.40 |
index p | confirmed cases | 0.51 |
temperature | confirmed cases | 0.34 |
humidity | confirmed cases | 0.43 |
precipitation | confirmed cases | 0.42 |
index p (lagged) | total cases * | 0.71 |
index p (lagged) | confirmed cases | 0.62 |
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Vazquez, C.; Alcantara, L.C.J.; Fonseca, V.; Lima, M.; Xavier, J.; Adelino, T.; Fritsch, H.; Castro, E.; de Oliveira, C.; Schuab, G.; et al. Retrospective Spatio-Temporal Dynamics of Dengue Virus 1, 2 and 4 in Paraguay. Viruses 2023, 15, 1275. https://doi.org/10.3390/v15061275
Vazquez C, Alcantara LCJ, Fonseca V, Lima M, Xavier J, Adelino T, Fritsch H, Castro E, de Oliveira C, Schuab G, et al. Retrospective Spatio-Temporal Dynamics of Dengue Virus 1, 2 and 4 in Paraguay. Viruses. 2023; 15(6):1275. https://doi.org/10.3390/v15061275
Chicago/Turabian StyleVazquez, Cynthia, Luiz Carlos Junior Alcantara, Vagner Fonseca, Mauricio Lima, Joilson Xavier, Talita Adelino, Hegger Fritsch, Emerson Castro, Carla de Oliveira, Gabriel Schuab, and et al. 2023. "Retrospective Spatio-Temporal Dynamics of Dengue Virus 1, 2 and 4 in Paraguay" Viruses 15, no. 6: 1275. https://doi.org/10.3390/v15061275