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Viruses 2018, 10(3), 121; doi:10.3390/v10030121
Challenge for One Health: Co-Circulation of Zoonotic H5N1 and H9N2 Avian Influenza Viruses in Egypt
VA-MD Regional College of Veterinary Medicine, University of Maryland, College Park, MD 20742, USA
Received: 25 January 2018 / Accepted: 7 March 2018 / Published: 9 March 2018
Highly pathogenic avian influenza (HPAI) H5N1 viruses are currently endemic in poultry in Egypt. Eradication of the viruses has been unsuccessful due to improper application of vaccine-based control strategies among other preventive measures. The viruses have evolved rapidly with increased bird-to-human transmission efficacy, thus affecting both animal and public health. Subsequent spread of potentially zoonotic low pathogenic avian influenza (LPAI) H9N2 in poultry has also hindered efficient control of avian influenza. The H5N1 viruses acquired enhanced bird-to-human transmissibility by (1) altering amino acids in hemagglutinin (HA) that enable binding affinity to human-type receptors, (2) loss of the glycosylation site and 130 loop in the HA protein and (3) mutation of E627K in the PB2 protein to enhance viral replication in mammalian hosts. The receptor binding site of HA of Egyptian H9N2 viruses has been shown to contain the Q234L substitution along with a H191 mutation, which can increase human-like receptor specificity. Therefore, co-circulation of H5N1 and H9N2 viruses in poultry farming and live bird markets has increased the risk of human exposure, resulting in complication of the epidemiological situation and raising a concern for potential emergence of a new influenza A virus pandemic. For efficient control of infection and transmission, the efficacy of vaccine and vaccination needs to be improved with a comprehensive control strategy, including enhanced biosecurity, education, surveillance, rapid diagnosis and culling of infected poultry.
Keywords:zoonotic avian influenza virus; H5N1; H9N2; Egypt; vaccines
The avian influenza virus (AIV) belongs to the family Orthomyxoviridae and the genus Influenza virus A . The virus has a negative-sense, single-stranded and segmented RNA genome and contains eight gene segments encoding at least 10 proteins: polymerase basic 1 (PB1), PB2, polymerase acid (PA), hemagglutinin (HA), nucleoprotein (NP), neuraminidase (NA), matrix 1 (M), M2, nonstructural (NS1) and NS2. The HA and NA proteins are surface glycoproteins and important for virus infectivity. The HA protein is responsible for virus attachment to the host cell and the major target of the humoral immune responses. The NA protein plays a role in the increase and spread of progeny virions by removing sialic acid from glycoproteins.
The natural reservoirs of the virus are wild aquatic birds, with ducks, gulls and shorebirds being the primary hosts, which has contributed to the wide geographic spread and distribution of circulating viruses . On the basis of antigenic specificity, 16 HA types and nine NA types have been detected in viruses isolated from wild waterfowl. Most AIVs cause little to no disease in aquatic birds. These low pathogenic avian influenza viruses (LPAIVs) contain an HA cleavage site, which can only be cleaved by proteases available in the intestinal and respiratory tract . In contrast, highly pathogenic avian influenza viruses (HPAIVs) cause systemic infection and high mortality in chickens and other terrestrial poultry; and in ducks and other waterfowl depending on the strain of HPAIVs. Two subtypes (H5 and H7) of LPAIVs can naturally switch to a highly pathogenic phenotype by the spontaneous acquisition of a multibasic cleavage site during circulation in poultry [4,5,6]. The host range of Influenza virus A is mainly determined by the affinity of HA binding to terminal sialic acids of glycoproteins on the surfaces of respiratory epithelial cells . Avian and human viruses preferentially bind to sialic acid linked to galactose via an α2-3 linkage (SAα2,3Gal) and galactose via an α2-6 linkage (SAα2,6Gal), respectively. The receptor binding site (RBS) is located at the membrane distal end of each HA monomer, and critical amino acids for host determinant are residues 222 and 224 in the HA of H5 (equivalent to residues 226 and 228 in the HA of H2 and H3) . Specifically, HAs with Gln-222 and Gly-224 (avian and equine viruses) recognize SAα2,3Gal, whereas those with Leu-226 and Ser-228 (human viruses) recognize SAα2,6Gal. In addition, major antigenic drift of avian H5 has been found in proximity to the HA RBS with key mutations in the H3-corresponding antigenic A and B sites . The two sites contain functional epitopes with high neutralizing efficiency. Antigenic matching between the vaccine and currently circulating field strains is critical for the efficacy of AIV vaccine [10,11,12,13].
In particular, the Asian-origin strain A/goose/Guangdong/1/96 (Gs/GD) lineage of H5 subtype HPAIV has become established in aquatic poultry as a reservoir and widespread across Asia, Europe, Africa and North America . The virus has become genetically diversified represented by multiple phylogenetic lineages, classified as clades 0–9 . Currently, only viruses from clades 0, 1 and 2 have infected humans since the initial 1997 outbreaks (Table 1) [15,16,17,18]. LPAI influenza A virus H9N2 was first isolated in the United States in 1966 in turkeys and was subsequently found to be prevalent among waterfowl . Since the l990s, H9N2 viruses have spread widely among gallinaceous poultry in East and Central Asia, the Middle East and Africa. The North America and Eurasian lineages of H9N2 viruses are circulating in poultry and wild birds . The Eurasian lineage harbors six genetically-distinct clades: G1-like, Y280-like, G9-like, BJ94-like, Y439-like and Korean-like clades (Table 2) [21,22]. The G1-like clade is further diversified into A, B, C and D subclades . Groups A and B are circulating extensively in the Middle Eastern countries and have been identified since 1999. Inter-subtype reassortments have been detected between the co-circulating H9N2 and the highly pathogenic H5N1 or H7N3 viruses. Interestingly, G1-like H9N2 has been involved in generating reassortant viruses by donating their six internal genes to multiple novel genotypes of AIV, such as HPAI H5N1 [23,24,25], zoonotic H7N9 [26,27,28] and LPAI H10N8 .
Despite control effort, the virus remains endemic in poultry in China, Indonesia, Vietnam and Egypt and continues to cause outbreaks in poultry, as well as sporadic human infection . Specifically, the cumulated number of confirmed human cases of H5N1 infection reported to the World Health Organization (WHO) to date is 860 with 454 fatal cases . Egypt is one of the countries with the highest number of human fatalities due to zoonotic H5N1 infections. In 2011, H9N2 viruses were detected to be co-circulating and co-infecting the same hosts with H5N1 viruses  and subsequently have established an endemic status in poultry. The HA of HPAIV H5N1 viruses circulating in Egypt encodes a multibasic amino acid motif (PQGERRR(KR)↓GLF) at the HA cleavage site, thus enhancing systemic spread of the virus in chickens (i.e., trachea, lung, brain, spleen, pancreas, liver, proventriculus, bursa of Fabricius and testis) and facilitating the bird-to-bird transmission of the virus . In contrast, Egyptian H9N2 viruses isolated from a natural outbreak are all LPAIV, but their continuous shedding and spread by oral and cloacal routes without causing any clinical signs in infected poultry might cause undetected spread of the virus in the field . Therefore, widespread co-circulation of H5N1 and H9N2 viruses has greatly raised a concern for potential generation of new sub- and geno-types of AIVs, thus making Egypt a potential epicenter for the next influenza pandemic and increasing concerns for public and animal health . To address these concerns, this review has focused on the evolution and epidemiology of Egyptian H5N1 and H9N2 viruses in poultry, fields and live bird markets (LBMs); their zoonotic impact on human health; and preventive strategies for better control of viral infection and transmission.
2. Evolution of HPAI H5N1 Viruses in Poultry and Humans
The evolutionary rate and positive selection of H5N1 viruses have increased due to vaccine-induced immune pressure in poultry or following adaptation upon transmission to new hosts (i.e., bird-to-human transmission) . H5N1 viruses of clade 2.2 spread by migratory birds from South Eastern to Western Asia, Europe and Africa in 2005 and 2006 . These viruses were detected in wild birds in Egypt in 2005 and subsequently isolated in poultry in February 2006 . Since then, over 30 million birds have been killed by the virus or culled to control, thus causing serious losses in poultry production. Egypt has been declared as a country endemic to HPAI H5N1. The outbreaks of H5N1 viruses have prevalently occurred during winter, and since 2009, outbreaks have occurred during the summer and autumn, suggesting a change in the temporal pattern of the virus . It is possible that the viruses circulating in Egypt have adapted to warmer environmental conditions .
The H5N1 viruses have rapidly evolved genetically and antigenically since the introduction of clade 2.2. viruses in Egypt, resulting in reclassification of the viruses into subclade 2.2.1 and 22.214.171.124 viruses (Table 1) [41,42]. The use of ineffective H5 vaccines in commercial poultry resulted in the emergence of a genetically- and antigenically-distinctive variant virus, clade 126.96.36.199 . These variant strains harbor major changes in immunogenic epitopes of the HA protein, thus causing antigenic drift . Five amino acid substitutions (at positions 74, 140, 141, 144 and 162) are primarily involved in the antigenic drift, and these mutations alone can reproduce the antigenic vaccine drift observed strains of clade 188.8.131.52 isolated from the field in 2008 . The 2.2.1 and 184.108.40.206 viruses were mainly detected in backyard poultry and commercial poultry, respectively, from 2008–2011 [9,38,45]. Since 2012, the 220.127.116.11 viruses have rarely been detected, but the 2.2.1 viruses continued to evolve to form a new clade 18.104.22.168 . The viruses have been isolated from non-vaccinated backyard birds, small-scale commercial poultry and humans since 2013 . Some clade 22.214.171.124 viruses in 2014 possessed mutations R140K in antigenic site A and A86V in antigenic site E of the HA gene, indicating further antigenic drift.
In recent years, Egypt has reported the highest number of human HPAI H5N1 cases (Table 3) . Human H5N1 cases have often been caused by infection with clade 2.2.1 and 126.96.36.199 viruses, whereas clade 188.8.131.52 viruses hardly caused any human cases . Furthermore, the clade 184.108.40.206 viruses contributed to a sharp increase in human H5N1 cases in 2014 and 2015. In 2016 and 2017, only Egypt reported human infection caused by clade 220.127.116.11 to WHO (Table 1). The clade 2.2.1 viruses that emerged between 2007 and 2008 had already acquired amino acid mutations (Q192H and the double 129Δ/I151T mutations), enabling human-type receptor binding during their transmission among the birds [45,48]. Subsequently, these changes have been found in H5N1 viruses isolated from humans, suggesting their attribution to efficient bird-to-human transmission. Other mutations (D94N, T156A, K189R and P235S) in the HA protein have also been shown to enhance binding affinity to the human-type receptor . Most Egyptian H5N1 viruses possess two other mutations that may facilitate their transmissibility and replication in mammals: (1) the deletion in the 130 loop (129Δ) with a concurrent loss of glycosylation mutation (T156A) in the HA and (2) E627K mutation in the PB2 protein . These mutations are critical for H5N1 virus transmissibility in ferrets and guinea pigs via respiratory droplets [45,51]. The loss of this glycosylation site located near the receptor-binding pocket has been shown to enhance the affinity of H5N1 virus binding to human-type receptors (SA2,6Gal) in ferret [52,53]. Interestingly, Egyptian H5N1 viruses have retained the classical avian α2,3 SA binding affinity. The Egyptian H5N1 viruses have not shown efficient transmissibility of respiratory droplets in ferrets . Most human infections have resulted from direct exposure to H5N1 virus-infected poultry or poultry products, and human-to-human transmission has not been documented to date in Egypt. This suggests that currently circulating H5N1 viruses in Egypt lack enough alterations required for efficient human-to-human transmission.
The NA protein is also an important surface protein by assisting the spread of viral infection . Complementary evolution of the HA and the NA has been suggested to be essential for efficient virus replication, which requires the balanced actions of HA receptor-binding specificity and NA sialidase activity . Analysis of the NA gene of Egyptian H5N1 viruses revealed that there was a 20-aa deletion in the NA stalk region (positions 49–68) . Naturally-occurring avian viruses with shortened stalks are known to be virulent in poultry . Most isolates of H5N1 viruses have not contained oseltamivir resistance markers at positions E119, H275, R293 and N295 (N1 numbering). However, a recent study has found one clade 18.104.22.168 virus (A/turkey/Egypt/7/2007) with a mutation at position N295S , which can be resistant to oseltamivir.
In 2016, a newly-emerged H5N8 virus was isolated from wild birds (i.e., green-winged teal and common coots) in Egypt [56,57]. Phylogenetic analysis revealed that the genome of the Egyptian H5N8 viruses was related to recently characterized reassortant H5N8 viruses of clade 22.214.171.124 isolated from different Eurasian countries . Further, chicken sera raised against commercial inactivated avian influenza-H5 vaccines did not react with these H5N8 viruses. This has complicated the epidemiological situation in Egypt where both HPAI H5N1 and LPAI H9N2 viruses are endemic among different poultry species. The establishment and dissemination of HPAI H5N8 across different bird species in Egypt would certainly make intricate the genetic diversity of AIV in Egypt and provide potentials for the emergence of reassortant strains with other subtypes.
3. Widespread Circulation of H9N2 in Commercial and Backyard Poultry
In Egypt, H9N2 outbreaks have mainly occurred during the winter months, but sporadic outbreaks are observed year-round particularly in the Nile Delta. The majority of infected chickens showed respiratory distress [58,59] with a decrease in egg production in breeder and layer flocks . In contrast, quails and some broiler flocks have also shown asymptomatic infections [60,61,62]. G1-like H9N2 viruses were first detected in poultry in 2010 and 2011. The emergence of H9N2 might have resulted from the importation of wild birds, legal or illegal trade of poultry, or other unidentified routes . H9N2 viruses were widespread in commercial farm settings between 2009 and 2012 and have established endemic status in Egyptian poultry populations since 2012. The viruses have been isolated from a wide range of birds, including chickens, quails, ducks, turkeys and pigeons in commercial and backyard sectors . The H9N2 strains circulating in Egypt between 2011 and 2015 mostly belonged to the G1 clade, similar to the circulating viruses in the Middle East with close phylogeny to the Israeli viruses. . However, genetic analyses of all eight genes have revealed substantial genetic diversity and frequent reassortment events in internal genes of PB2, PA and NP among circulating Egyptian H9N2 strains (intrasubtype exchanges) . A recent study further indicated that H9N2 virus isolated from domestic pigeons inherited five internal genes from Eurasian AIVs circulating in wild birds .
Egyptian H9N2 viruses possessed several genetic markers of increased transmission to mammalian hosts . In 2010, H9N2 viruses carrying HA L234 (H9 numbering) were detected in poultry [59,61]. Further, H9N2 isolates from 2011–2015 had H191 and L234 (H183 and L226, respectively, with H3 numbering), which correlate with a shift in affinity of the HA from the avian-type receptor towards the human-type receptor [62,63,64]. However, markers of mammalian adaption in the PB2 protein (K627 and N701) have not been found in the H9N2 isolates [62,63].
H9N2 viruses phylogenetically group into three clusters [1,2,3] within subclade B of the G1 clade. Antigenic analysis has shown a close clustering of the Egyptian H9N2 viruses with other recent G1-B-like H9N2 strains . In contrast, the viruses have shown a significant antigenic distance from viruses outside the G1-B subclade. Further antigenic analysis of H9N2 viruses isolated from 2011–2015 showed antigenic conservation of different Egyptian H9N2 isolates from chickens, pigeons and ducks [62,64]. However, antigenic drift of H9N2 isolated from quails has been found as a result of mutations in the antigenic sites A (N166D) and B (D153N and N201A), suggesting that the virus can be a new escape mutant variant cluster with an adaptive evolution in quails [67,68].
4. Potential Reassortment of AIVs
Reassortment plays an important role in the evolution of segmented AIVs . Frequent reassortment events between HPAI H5N1 and H9N2 have been reported in Bangladesh , Pakistan , and China . In particular, H9N2 has contributed to generating highly zoonotic AIV in China by donating their six internal genes [23,26,27]. Therefore, surveillance of reassortant viruses in the field can be critical for public health. In Egypt, the existence of reassortment between the Egyptian A/H5N1 clades and H9N2 has not been detected in the field [49,60,63,64,69,70,71]. The lack of detection of reassortant viruses may have been due to insufficient surveillance for circulating viruses. In addition, HPAI H5N1 and H9N2 may have circulated in mutually exclusive host populations or may have been separated by geographical or temporal barriers. For example, the presence of the H5N1 126.96.36.199 clade circulated from 2008–2011 was highly restricted to industrial poultry farms. Thus, divergent evolution was fostered even by the sectoral separation of poultry populations in Egypt.
Although genetic incompatibility between the two viruses could have resulted in a lack of reassortment event, a recent study demonstrated generation of reassortants with various genotypes by co-infecting Egyptian H5N1 clade 188.8.131.52 and H9N2 viruses in embryonated chicken eggs . The viruses were coamplified in embryonated chicken eggs and then plaque-purified for sequencing analysis of selected clones. Reassortants were restricted to the H5N1 subtype and acquired from two to all six of the internal segments of the H9N2 virus. Replication of the reassortant viruses in ferret did not indicate enhanced zoonotic potential. Despite the potentials of generating reassortant viruses, their spread would be determined by their fitness to outcompete the parental viruses in the field. Furthermore, enhanced surveillance and continuous examination of the whole genome of both subtypes are required to improve the early detection of reassortant viruses.
5. Epidemiology of Zoonotic H5N1 and H9N2 Viruses in Egypt
The spread and outbreaks of AIV have increased as a result of global trade, increase poultry production, climate changes, bird migration, human movement and increasing global population . Egypt lies at the crossroads of two major spatially-overlapping migration flyways: the Black Sea-Mediterranean flyway and the East African-West Asian flyway linking Africa, Europe and Asia . The Nile Delta is an important wintering stopover for millions of birds between Eurasia and Africa, where birds from different origins mix and mingle. The distribution of infected flocks along the main migration routes of birds in Egypt has suggested that the virus might be introduced via wild birds . The high density of poultry and human populations along the Nile valley enables frequent and close contacts between poultry, live-stock and humans.
Poultry farming in Egypt includes commercial farming with a high density of poultry population, free-range rearing (backyards, rooftops) and trading via LBMs . Egyptian families raise poultry traditionally in a backyard setting, accounting for approximately a third of poultry production in the country . Backyard birds have become an intermediate transmission host for AIV infection of poultry in the commercial sector and LBMs and for human infection. In general, apparently healthy birds are usually sold in traditional LBM's, but approximately 38% of households slaughter their birds once they become ill. In addition, backyard farms have outdoor enclosures with low biosecurity, whereas commercial farms have high biosecurity by limiting poultry contact with potentially infected wild birds. In Egypt, due to insufficient slaughtering facilities, trading of freshly-slaughtered poultry meat is mainly conducted in LBMs . In fact, LBMs have been implicated in numerous outbreaks of AIV worldwide [75,76]. LBMs play an important role in the dynamics of AIV transmission and evolution, thus facilitating reassortment between viruses. In a surveillance, H5N1 was detected from 0.1% of examined commercial poultry farms, 10.5% of backyard birds and 11.4% of LBMs . Similarly, a surveillance study conducted in Qena and Luxor has shown that infection rates for backyard birds and birds from local bird markets (86.84% and 76%) was higher than those in birds from commercial farms (13.16% and 24%), respectively . In general, bird-to-human transmission has occurred due to contact and/or slaughtering and defeathering of infected backyard birds . Specifically, the cases of human infections have been reported by exposure to backyard poultry (70%), bred domestic birds (26%), slaughtered poultry (14%) or dead birds (4%) . The main symptoms were fever (98%), sore throat (94%) and cough (83%).
Interestingly, prevalence of H5N1 has been found in backyards raising chickens and waterfowl together in the same vicinity and LBMs having chickens and waterfowl together . In contrast to chickens, waterfowl can be silently infected with H5N1. Particularly, the infected ducks and geese may play a role as a reservoir and/or source for the transmission of H5N1 to chickens and may prolong the circulation of the virus in LBMs . Mallard ducks experimentally infected with H5N1 have been shown to excrete the virus asymptomatically for 17 days . The Food and Agriculture Organization (FAO) has also established that ducks and geese pose a very high risk of infection to households and small-scale poultry farms . Therefore, it will be important to understand the local circulation of AIV in domestic poultry and wild birds in Egypt to identify the risk factors in designing and implementing effective control strategies.
Sero-surveillance data indicated occupational exposure of humans to both H5N1 and H9N2 in Egypt . In Egypt, most reported cases of HPAI H5N1 infections have affected backyard poultry producers with a case-fatality rate of 36% . Most cases of human infections have been reported during eight of the 12 months with the highest incidents in January and February, reflecting a seasonal pattern conforming to the climate, with influenza activity peaks in the colder months . The seroprevalence rate of antibodies against H5N1 (titers > 80) was 2%. H9N2 viruses are considered a pandemic risk, given their endemicity, ability to infect numerous species and a lack of population-wide immunity. In 2015, the first human H9N2 case was reported from Egypt . In 2015, three children with a history of exposure to poultry were found positive for the RNA of H9N2. Human infections showed transient influenza-like illness, but subsided without sequelae. In humans, the seroprevalence of antibodies against H9N2 virus ranged between 1.2% and 9% . Due to the potential risk, the World Health Organization monitors the continual evolution of H5N1 and H9N2 clades to provide candidate vaccine viruses for public health purposes .
The viruses have sporadically infected other mammalian species. Specifically, pigs have the largest epidemiological role in the evolution of new influenza viruses, since they are susceptible to infection with both avian and human influenza viruses . In Egypt, exposure of pigs to influenza viruses has also been reported [65,84]. Serological analyses showed the presence of neutralizing antibodies against H9N2, H5N1 and human pandemic H1N1 viruses in pigs sampled in Cairo, Egypt, where most of the swine population is located. Molecular detection of the viruses further confirmed the infection of pigs with avian and human viruses in abattoir pigs, suggesting that the routine surveillance of AI in pigs will be required to monitor the emergence of reassortant viruses and their pandemic potential [64,84].
6. Challenges with Current Vaccination Strategy in Egypt
Vaccination can be an efficient strategy to control AIV . Since the emergence of HPAI H5N1, Egypt has vaccinated poultry as a national strategy to control HPAI H5N1 and H9N2. Despite nationwide attempts of eradication, the viruses have gained endemic status in poultry in Egypt and continued to threaten poultry production and public health . The goal of national vaccination campaigns to achieve population immunity has been difficult to achieve because of limitations in financial and human resources. For example, in 2006, the vaccine coverage rate for H5N1 was 69.9% . The exact population of household poultry is unknown; however, an estimated 4–9.5 million households raise poultry in confined spaces in houses . Vaccination in village poultry has been a challenge and hindered achieving a population immunity with actual vaccination coverage rates between 27.8% and 48.6%.
Most commonly-used vaccines are inactivated, oil-emulsified, whole AIV vaccines. At least 24 commercial inactivated avian influenza H5 vaccines have been licensed for use at poultry farms in Egypt . Vaccine seed strains include classical H5 lineage viruses and reverse genetics-engineered reassortant viruses containing H5N1 virus HA and NA genes and the remaining genes from A/Puerto Rico/8/1934 (H1N1). However, the genetic dissimilarity between commercial vaccines and currently circulating viruses has resulted in inefficient vaccination in the field. These vaccines confer suboptimal protection of poultry that can result in continuous circulation of AIV in the field. This further leads to vaccine-induced escape mutants as shown with the emergence of the antigenic drift variant (clade 184.108.40.206) in commercial poultry. In addition, administration of vaccines, which requires handling and injection of individual birds, is labor intensive. Particularly, administration of prime-and-boost vaccination rounds is challenging with numerous birds in industrial settings and rapid turnover rates of poultry populations . This is not a practical vaccination approach for village farmers. For the vaccination of broiler poultry, a long withdrawal period for inactivated vaccines has also limited AIV vaccination in hatcheries. Indeed, the use of one-day-old age vaccination in broilers using inactivated vaccines resulted in a failure of vaccination by inducing inadequate immune responses, even further decreasing the effective immunity in the population .
In the field, the infection of H9N2 viruses in commercial poultry can also induce cross immunity against H5N1, which can hinder efficient vaccination and control of H5N1 [60,89]. This has been demonstrated by evaluating the impact of H9N2 infection on the course of consecutive infection with a lethal Egyptian HPAI H5N1 . Chickens previously infected with an Egyptian LPAI H9N2 developed a delayed course of infection, with prolonged viral shedding following challenge with a lethal dose of Egyptian HPAI H5N1 clade 220.127.116.11 H9N2 pre-infection modulated, but did not conceal clinical disease by HPAI H5N1. In contrast, homologous H5 vaccination abolished clinical syndromic surveillance, although vaccinated clinically healthy birds were capable of shedding and spreading the virus. Cross-reactive cellular immunity induced by the internal proteins of the H9N2 virus plays a critical role in the delayed development of clinical signs and decreased virus excretion [89,91]. In Egypt, culling is only conducted when clinical disease is evident . Therefore, this can be a drawback for efficient control of AIV and needs to be considered in developing efficient vaccines against HPAI H5N1.
Backyard chickens are being raised in a low biosecurity setting, thus facilitating the transmission of viruses . However, vaccination has not been implemented for backyard chickens, and the efficacy of vaccines for backyard poultry has not been well evaluated. In a backyard setting, double doses of H5N1 vaccination based on a contemporary Egyptian clade 18.104.22.168 virus has been shown to induce immune responses in turkeys, ducks, geese and chickens raised together . When challenged, vaccinated birds survived and shed less virus in comparison with unvaccinated birds. However, unvaccinated ducks showed no symptoms of infection and survived the duration of the experiment, indicating a low sensitivity of Pekin ducks to currently circulating 22.214.171.124 H5N1 challenge virus. Moreover, vaccinated ducks shed more virus as compared to vaccinated birds of other species. This study demonstrates the importance of using a genetically-matched vaccine with a currently circulating strain to efficiently protect chickens in a backyard setting. Since the protective efficacy in the tested poultry was variable, mixing various species in the backyards can enhance interspecies transmission of AIV. In fact, Egypt has many “Trojan horses” in the epidemiology of AIV including asymptomatic vaccinated birds, such as subclinically-infected ducks, geese and other waterfowl. Since in most cases, biosecurity measures are impractical or impossible to implement and enforce, vaccination is one of the few preventive strategies available to protect domestic ducks against H5N1 . However, vaccine coverage rates of meat ducks (15%) are relatively low compared to high vaccine coverage rates of meat (78.2%) and layer (31.6%) chickens . Ducks have also been known to require higher doses of vaccination than chickens for adequate immunity for protection from HPAI H5N1 . Further, the success of the vaccination program can be affected by the duck species and/or breed, vaccination protocols (number of doses, ages of birds) and efficacy of vaccines . Therefore, it will be advantageous to develop a comprehensive vaccination strategy including domestic waterfowl and to develop effective vaccines for domestic waterfowl.
7. Enhancing Preventive Strategies for Efficient Control of AIV
Eradication of AIV was unsuccessful in Egypt despite the vaccination of poultry immediately after the introduction of HPAI H5N1. The prolonged survival and shedding of AIV in infected chickens have fostered the endemic status of the virus and have caused antigenic drift. To enhance the protective efficacy of vaccines and efficient vaccination in the field, development of a new platform of vaccine will be desirable for cost-effective and massive vaccination of short-lived poultry. Currently, use of live attenuated influenza vaccines in poultry is not recommended by the World Organisation for Animal Health (OIE) due to the potential risk of reassortment or mutations for generating AIV . Alternatively, replicating viral vector vaccines offer a live vaccine approach without requiring the involvement of complete pathogens. To facilitate the administration of vaccines (mass vaccination), live-attenuated avian virus (i.e., Newcastle disease virus, fowlpox virus and turkey herpesvirus) vectored vaccines have been licensed for poultry vaccination with limited use (<5% of usage) in China and in Mexico [92,93,94,95,96]. Despite the advantage of mass vaccination (i.e., drinking water and spray), maternal antibodies to vaccine vectors have hampered the efficacy of vaccines in field vaccination . Currently, there is a limited vaccination approach for overcoming the interference by maternal antibodies in poultry within the first two weeks of life, which can be particularly critical for the protection of broiler chickens from HPAI H5N1.
Recently, a new vaccine vector platform using the chimeric Newcastle disease virus (NDV)-vectored vaccine has been developed for vaccination of poultry . In contrast to other strategies using the conventional NDV vector , the chimeric NDV vector was constructed by replacing the major antigens of ectodomains of F and HN proteins with those of avian paramyxovirus serotype-2 (APMV-2). The chimeric NDV is serologically distant from NDV, suggesting that maternal antibody to NDV could not inhibit the replication of chimeric vaccine virus. One-day-old commercial chickens were vaccinated by a chimeric NDV-vectored vaccine for inducing early immunity and subsequently boosted with a conventional NDV vectored vaccine for inducing robust and long-lasting immunity . This heterologous prime-boost vaccination strategy can provide improved immunization with a convenient platform for mass vaccination in the field. Since NDV is also co-circulating with HPAI H5N1 in poultry in Egypt [100,101], boosting with LaSota-vectored vaccine can also serve as a dual vaccination approach, thus making it economical and effective for the poultry farmers. This system can be used as a “differentiating infected from vaccinated animals” (DIVA) vaccine, thus facilitating epidemiological surveillance and vaccination systems for AIV in the field. Furthermore, vaccine viruses can be readily engineered by placing protective antigens of H5N1 or H9N2and by further updating the antigens with a replaceable vaccine cassette of currently-circulating virus in the field. This will make it feasible to apply this vaccination system for the generation of tailored vaccines targeting the Egyptian strains of AIV. Indeed, to maintain the most effective vaccination program, the field virus should be monitored for antigenic changes, and the vaccine should be tested against new variants or at a minimum the vaccine should be re-evaluated every 2–3 years for protection against currently circulating field viruses . If necessary, vaccine seed update can be a strategic approach to provide protection of poultry against continuously emerging H5N1 strains. Even H9N2 viruses have diverged into different sublineages, although Egyptian H9N2 viruses share a close genetic relationship. Recently, H9N2 isolates from quail have shown antigenic drift [67,68]. The antigenic relatedness of different sublineages needs further examination to select suitable vaccine strains.
In Egypt, vaccination of poultry has been used as the front line preventive strategy to prevent AI infection. Current endemic status of H5N1 and H9N2 viruses in the field implies the need for a comprehensive preventive strategy with the combination of effective vaccination, biosecurity, education, surveillance, rapid diagnosis and depopulation of affected flocks [13,85]. Poultry in backyards and LBMs is a major source of the continuous outbreaks in Egypt. It will be necessary to continuously educate famers about biosecurity and the increasing risk of open-range poultry . In general, voluntary culling of infected backyard birds is limited, thus making it difficult to eradicate the disease. Vaccination of poultry may not be feasible for backyard poultry growers in Egypt. Since they commonly purchase different types of birds at 3–4 weeks of age from specific nursery farms, intervention of effective vaccination of young birds at nursery farms may be a practical strategy . The poultry meat trade in Egypt relies strongly on LBMs, partly because of consumers’ long-standing cultural preference for fresh poultry meat . All categories (big, small, daily and weekly) of LBMs in Egypt operate with minimal to no biosecurity standards, and veterinary inspections are rarely implemented. In LBMs, major risk factors associated with biosecurity compliance are wild animals traded in the market and the lack of mandatory routine disinfection and hand washing after slaughter, as well as limited fencing and gates around the LBMs, suggesting that biosecurity and compliance level must be monitored and enforced . It can also be beneficial to reduce inter-governorate inter-regional movements associated with poultry trade through promotion of regional trade to prevent the spread of AIV . The Food and Agricultural Organization of the United Nations has also recommended implementing a policy of no carryover of animals (i.e., housing the same animals in the marketplace for multiple days), which improves live-market design to reduce AIV exchange . The One Health concept focuses on the relationship and interconnectedness between humans, animals and the environment and recognizes that the health and well-being of humans is intimately connected to the health of animals and their environment. Both human and poultry populations will continue to rise in Egypt. Therefore, continued co-circulation of H5N1 and H9N2 in the field and environment can increase the occurrences of AI outbreaks in poultry and humans . In fact, despite declines in other countries, AIV continues to circulate and enter the human population in Egypt. The epidemiology of AIV also implies the need for enhanced surveillance and monitoring of AIVs in Egypt for early detection of human-transmissible AIVs. Established genetic analysis of AIVs to identify their human transmissibility can be utilized to develop a rapid and feasible intervention strategy for efficient control of emerging viruses.
Egyptian H5N1 and H9N2 viruses have evolved to possess molecular markers that can potentially enhance the transmissibility of the viruses from birds to humans. A practical strategy for rapid, efficient and economical immunization of poultry in the field will be required for a better control of zoonotic avian influenza viruses for animal health and public health. As a preventive strategy, education of farmers for effective vaccination and enhancing biosecurity measures can also be beneficial in reducing the circulation of AIVs in the field. Co-circulation of zoonotic H5N1 and H9N2 viruses in poultry and the emergence of H5N8 in wild birds has complicated the epidemiological situation in Egypt. As a preventive strategy, surveillance efforts can be extended to monitor the evolution of AIVs and the emergence of human transmissible viruses in wild aquatic birds and domestic poultry in commercial farms, backyards and LBMs.
This study was supported by the Maryland Agricultural Experiment Station, University of Maryland.
Conflicts of Interest
The author declares no conflicts of interest.
- Palese, P.; Shaw, M.L. Orthomyxoviridae: The viruses and their replication. In Fields Virology, 5th ed.; Knipe, D.M., Howley, P.M., Eds.; Lippincott Williams & Wilkins: Philadelphia, PA, USA, 2007; pp. 1647–1689. [Google Scholar]
- Sonnberg, S.; Webby, R.J.; Webster, R.G. Natural history of highly pathogenic avian influenza H5N1. Virus Res. 2013, 178, 63–77. [Google Scholar] [CrossRef] [PubMed]
- Alexander, D.J. Summary of avian influenza activity in Europe, Asia, Africa, and Australasia, 2002–2006. Avian Dis. 2007, 51, 161–166. [Google Scholar] [CrossRef] [PubMed]
- Horimoto, T.; Kawaoka, Y. Molecular changes in virulent mutants arising from avirulent avian influenza viruses during replication in 14-day-old embryonated eggs. Virology 1995, 206, 755–759. [Google Scholar] [CrossRef]
- Kawaoka, Y.; Webster, R.G. Evolution of the A/Chicken/Pennsylvania/83 (H5N2) influenza virus. Virology 1985, 146, 130–137. [Google Scholar] [CrossRef]
- Webster, R.G.; Kawaoka, Y.; Bean, W.J. What is the potential of avirulent influenza viruses to complement a cleavable hemagglutinin and generate virulent strains. Virology 1989, 171, 484–492. [Google Scholar] [CrossRef]
- Neumann, G.; Kawaoka, Y. Host range restriction and pathogenicity in the context of influenza pandemic. Emerg. Infect. Dis. 2006, 12, 881–886. [Google Scholar] [CrossRef] [PubMed]
- Connor, R.J.; Kawaoka, Y.; Webster, R.G.; Paulson, J.C. Receptor specificity in human, avian, and equine H2 and H3 influenza virus isolates. Virology 1994, 205, 17–23. [Google Scholar] [CrossRef] [PubMed]
- Cattoli, G.; Fusaro, A.; Monne, I.; Coven, F.; Joannis, T.; El-Hamid, H.S.; Hussein, A.A.; Cornelius, C.; Amarin, N.M.; Mancin, M.; et al. Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultry. Vaccine 2011, 29, 9368–9375. [Google Scholar] [CrossRef] [PubMed]
- Ducatez, M.F.; Bahl, J.; Griffin, Y.; Stigger-Rosser, E.; Franks, J.; Barman, S.; Vijaykrishna, D.; Webb, A.; Guan, Y.; Webster, R.G.; et al. Feasibility of reconstructed ancestral H5N1 influenza viruses for cross-clade protective vaccine development. Proc. Natl. Acad. Sci. USA 2011, 108, 349–354. [Google Scholar] [CrossRef] [PubMed]
- Kilany, E.M.; Abdelwhab, A.S.; Arafa, A.; Selim, M.; Safwat, A.A.; Nawar, A.M.; Erfan, M.K.; Hassan, M.M.; Aly, H.M. Protective efficacy of H5 inactivated vaccines in meat turkey poults after challenge with Egyptian variant highly pathogenic avian influenza H5N1 virus. Vet. Microbiol. 2011, 150, 28–34. [Google Scholar] [CrossRef] [PubMed]
- Swayne, D.E. Avian influenza vaccine use during 2001. In Proceedings of the 104th Annual Meeting of the U.S. Animal Health Association (USAHA), Richmond, VA, USA, 2 June 2001; pp. 469–471. [Google Scholar]
- Swayne, D.E.; Spackman, E. Current status and future needs in diagnosis and vaccines for high pathogenicity avian influenza. Avian Influenza Diagn. Vaccines 2013, 135, 79–94. [Google Scholar]
- WHO/OIE/FAO; H5N1 Evolution Working Group. Toward a unified nomemclature system for highly pathogenic avian influenza virus (H5N1). Emerg. Infect. Dis. 2008, 14. [Google Scholar] [CrossRef]
- Abdel-Ghafar, A.N.; Chotpitayasunondh, T.; Gao, Z.; Hayden, F.G.; Nguyen, D.H.; de Jong, M.D.; Naghdaliyev, A.; Peiris, J.S.; Shindo, N.; Soeroso, S.; et al. Update on avian influenza A (H5N1) virus infection in humans. N. Engl. J. Med. 2008, 358, 261–273. [Google Scholar] [PubMed]
- Dung Nguyen, T.; Vinh Nguyen, T.; Vijaykrishna, D.; Webster, R.G.; Guan, Y.; Malik, J.; Peiris, J.S.; Smith, G.J. Multiple sublineages of influenza A virus (H5N1), Vietnam, 2005–2007. Emerg. Infect. Dis. 2008, 14, 632–636. [Google Scholar] [PubMed]
- Webster, R.G.; Govorkova, E.A. H5N1 influenza—Continuing evolution and spread. N. Engl. J. Med. 2006, 355, 2174–2177. [Google Scholar] [CrossRef] [PubMed]
- World Health Organization (WHO). Antigenic and Genetic Characteristics of Zoonotic Influenza Viruses and Development of Candidate Vaccine Viruses for Pandemic Preparedness; World Health Organization: Geneva, Switzerland, 2016; Available online: http://www.who.int/influenza/vaccines/virus/201602_zoonotic_vaccinevirusupdate.pdf (accessed on 2 January 2018).
- Fusaro, A.; Monne, I.; Salviato, A.; Valastro, V.; Schivo, A.; Amarin, N.M.; Gonzalez, C.; Ismail, M.M.; Al-Ankari, A.R.; Al-Blowi, M.H.; et al. Phylogeography and evolutionary history of reassortant H9N2 viruses with potential human health implications. J. Virol. 2011, 85, 8413–8421. [Google Scholar] [CrossRef] [PubMed]
- Wester, R.G.; Bean, W.J.; Gorman, O.T.; Chambers, T.M.; Kawaoka, Y. Evolution and ecology of influenza A viruses. Microbiol. Rev. 1992, 56, 152–179. [Google Scholar]
- Tosh, C.; Nagarajan, S.; Behera, P.; Rajukumar, K.; Purohit, K.; Kamal, R.P.; Murugkar, H.V.; Gounalan, S.; Pattnaik, B.; Vanamayya, P.R.; et al. Genetic analysis of H9N2 avian influenza viruses isolated from India. Arch. Virol. 2008, 153, 1433–1439. [Google Scholar] [CrossRef] [PubMed]
- Xu, K.M.; Li, K.S.; Smith, G.J.; Li, J.W.; Tai, H.; Zhang, J.X.; Webster, R.G.; Peiris, J.S.; Chen, H.; Guan, Y. Evolution and molecular epidemiology of H9N2 influenza A viruses from quail in southern China, 2000–2005. J. Virol. 2007, 81, 2635–2645. [Google Scholar] [CrossRef] [PubMed]
- Guan, Y.; Shortridge, K.F.; Krauss, S.; Webster, R.G. Molecular characterization of H9N2 influenza viruses: Were they the donors of the “internal” genes of H5N1 viruses in Hong Kong? Proc. Natl. Acad. Sci. USA 1999, 96, 9363–9367. [Google Scholar] [CrossRef] [PubMed]
- Iqbal, M.; Yaqub, T.; Reddy, K.; McCauley, J.W. Novel genotypes of H9N2 influenza A viruses isolated from poultry in Pakistan containing NS genes similar to highly pathogenic H7N3 and H5N1 viruses. PLoS ONE 2009, 4, e5788. [Google Scholar] [CrossRef] [PubMed]
- Lin, Y.P.; Shaw, M.; Gregory, V.; Cameron, K.; Lim, W.; Klimov, A.; Subbarao, K.; Guan, Y.; Krauss, S.; Shortridge, K.; et al. Avian-to-human transmission of H9N2 subtype influenza A viruses: Relationship between H9N2 and H5N1 human isolates. Proc. Natl. Acad. Sci. USA 2000, 97, 9654–9658. [Google Scholar] [CrossRef] [PubMed]
- Lam, T.T.; Wang, J.; Shen, Y.; Zhou, B.; Duan, L.; Cheung, C.L.; Ma, C.; Lycett, S.J.; Leung, C.Y.; Chen, X.; et al. The genesis and source of the H7N9 influenza viruses causing human infections in China. Nature 2013, 502, 241–244. [Google Scholar] [CrossRef] [PubMed]
- Gao, R.; Cao, B.; Hu, Y.; Feng, Z.; Wang, D.; Hu, W.; Chen, J.; Jie, Z.; Qiu, H.; Xu, K.; et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N. Engl. J. Med. 2013, 368, 1888–1897. [Google Scholar]
- Zhu, H.; Lam, T.Y.; Smith, D.K.; Guan, Y. Emergence and development of H7N9 influenza viruses in China. Curr. Opin. Virol. 2016, 16, 106–113. [Google Scholar] [CrossRef] [PubMed]
- Chen, H.; Yuan, H.; Gao, R.; Zhang, J.; Wang, D.; Xiong, Y.; Fan, G.; Yang, F.; Li, X.; Zhou, J.; et al. Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: A descriptive study. Lancet 2014, 383, 714–721. [Google Scholar] [CrossRef]
- Kalthoff, D.; Globig, A.; Beer, M. (Highly pathogenic) avian influenza as a zoonotic agent. Vet. Microbiol. 2010, 140, 237–245. [Google Scholar] [CrossRef] [PubMed]
- World Health Organization (WHO). Cumulative Number of Confirmed Human Cases of Avian Influenza A (H5N1) Reported to WHO, 2003–2017; World Health Organization: Geneva, Switzerland, 2017; Available online: http://www.who.int/influenza/human_animal_interface/2017_02_14_tableH5N1.pdf?ua=1 (accessed on 2 January 2018).
- Kayed, A.S.; Kandeil, A.; El-Shesheny, R.; Ali, M.A.; Kayali, G. Active surveillance of avian influenza viruses in Egyptian poultry, 2015. East. Mediterr. Health J. 2016, 22, 557–561. [Google Scholar] [CrossRef] [PubMed]
- Hagag, I.T.; Mansour, S.M.G.; Zhang, Z.; Ali, A.A.H.; Ismaiel, E.B.M.; Salama, A.A.; Cardona, C.J.; Collins, J.; Xing, Z. Pathogenicity of Highly Pathogenic Avian Influenza Virus H5N1 in naturally infected poultry in Egypt. PLoS ONE 2015, 10, e0120061. [Google Scholar] [CrossRef] [PubMed]
- Abdel Hany, H.S.; Ellakany, H.F.; Hussien, H.A.; Elbestawy, A.R.; Abdel Baky, K.M. Pathogenicity of an avian influenza H9N2 virus isolated from broiler chickens in Egypt. Alex. J. Vet. Sci. 2016, 51, 90–100. [Google Scholar]
- Abdelwhab, E.M.; Abdel-Moneim, A.S. Epidemiology, ecology and gene pool of influenza A virus in Egypt: Will Egypt be the epicentre of the next influenza pandemic? Virulence 2015, 6, 6–18. [Google Scholar] [CrossRef] [PubMed]
- Yassine, H.M.; Lee, C.W.; Gourapura, R.; Saif, Y.M. Interspecies and intraspecies transmission of influenza A viruses: Viral, host and environmental factors. Anim. Health Res. Rev. 2010, 11, 53–72. [Google Scholar] [CrossRef] [PubMed]
- World Health Organization (WHO). Revised and updated nomenclature for highly pathogenic avian influenza A (H5N1) viruses. Influenza Other Respir. Viruses 2014, 8, 384–388. [Google Scholar]
- El-Shesheny, R.; Kandeil, A.; Bagato, O.; Maatouq, A.M.; Moatasim, Y.; Rubrum, A.; Song, M.S.; Webby, R.J.; Ali, M.A.; Kayali, G. Molecular characterization of avian influenza H5N1 virus in Egypt and the emergence of a novel endemic subclade. J. Gen. Virol. 2014, 95, 1444–1463. [Google Scholar] [CrossRef] [PubMed]
- Abdelwhab, E.M.; Selim, A.A.; Arafa, A.; Galal, S.; Kilany, W.H.; Hassan, M.K.; Aly, M.M.; Hafez, M.H. Circulation of avian influenza H5N1 in live bird markets in Egypt. Avian Dis. 2010, 54, 911–914. [Google Scholar] [CrossRef] [PubMed]
- El-Zoghby, E.F.; Aly, M.M.; Nasef, S.A.; Hassan, M.K.; Arafa, A.S.; Selim, A.A.; Kholousy, S.G.; Kilany, W.H.; Safwat, M.; Abdelwhab, E.M.; et al. Surveillance on A/H5N1 virus in domestic poultry and wild birds in Egypt. Virol. J. 2013, 10, 203. [Google Scholar] [CrossRef] [PubMed]
- Kayali, G.; Webby, R.J.; Ducatez, M.F.; El-Shesheny, R.A.; Kandeil, A.M.; Govorkova, E.A.; Mostafa, A.; Ali, M.A. The epidemiological and molecular aspects of influenza H5N1 viruses at the human–animal interface in Egypt. PLoS ONE 2011, 6, e17730. [Google Scholar] [CrossRef] [PubMed]
- WHO/OIE/FAO; H5N1 Evolution Working Group. Continued evolution of highly pathogenic avian influenza A (H5N1): Updated nomenclature. Influenza Other Respir. Viruses 2012, 6, 1–5. [Google Scholar]
- Grund, C.; Abdelwhabel, S.M.; Arafa, A.S.; Ziller, M.; Hassan, M.K.; Aly, M.M.; Hafez, H.M.; Harder, T.C.; Beer, M. Highly pathogenic avian influenza virus H5N1 from Egypt escapes vaccine-induced immunity but confers clinical protection against a heterologous clade 2.2.1 Egyptian isolate. Vaccine 2011, 29, 5567–5573. [Google Scholar] [CrossRef] [PubMed]
- Hassan, M.K.; Kilany, W.H.; Abdelwhab, E.M.; Arafa, A.S.; Selim, A.; Samy, A.; Samir, M.; Le Brun, Y.; Jobre, Y.; Aly, M.M. Distribution of avian influenza H5N1 viral RNA in tissues of AI-vaccinated and unvaccinated contact chickens after experimental infection. Arch. Virol. 2012, 157, 951–959. [Google Scholar] [CrossRef] [PubMed]
- Watanabe, Y.; Ibrahim, M.S.; Ellakany, H.F.; Kawashita, N.; Mizuike, R.; Hiramatsu, H.; Sriwilaijaroen, N.; Takagi, T.; Suzuki, Y.; Ikuta, K. Acquisition of human-type receptor binding specificity by new H5N1 influenza virus sublineages during their emergence in birds in Egypt. PLoS Pathog. 2011, 7, e1002068. [Google Scholar] [CrossRef] [PubMed]
- Arafa, A.S.; Naguib, M.M.; Luttermann, C.; Selim, A.A.; Kilany, W.H.; Hagag, N.; Samy, A.; Abdelhalim, A.; Hassan, M.K.; Abdelwhab, E.M.; et al. Emergence of a novel cluster of influenza A(H5N1) virus clade 126.96.36.199 with putative human health impact in Egypt, 2014/15. Euro Surveill. 2015, 20, 2–8. [Google Scholar] [CrossRef] [PubMed]
- El-Shesheny, R.; Bagato, O.; Kandeil, A.; Mostafa, A.; Mahmoud, S.H.; Hassanneen, H.M.; Webby, R.J.; Ali, M.A.; Ghazi, K. Re-emergence of amantadine-resistant variants among highly pathogenic avian influenza H5N1 viruses in Egypt. Infect. Genet. Evol. 2016, 46, 102–109. [Google Scholar] [CrossRef] [PubMed]
- Watanabe, Y.; Arai, Y.; Daidoji, T.; Kawashita, N.; Ibrahim, M.S.; El-Gendy Eel, D.; Hiramatsu, H.; Kubota-Koketsu, R.; Takagi, T.; Murata, T.; et al. Characterization of H5N1 influenza virus variants with hemagglutinin mutations isolated from patients. MBio 2015, 6. [Google Scholar] [CrossRef] [PubMed]
- Arafa, A.-S.; Yamada, S.; Imai, M.; Watanabe, T.; Yamayoshi, S.; Iwatsuki-Horimoto, K.; Kiso, M.; Sakai-Tagawa, Y.; Ito, M.; Imamura, T.; et al. Risk assessment of recent Egyptian H5N1 influenza viruses. Sci. Rep. 2016, 6, 38388. [Google Scholar] [CrossRef] [PubMed]
- Tharakaraman, K.; Raman, R.; Viswanathan, K.; Stebbins, N.W.; Jayaraman, A.; Krishnan, A.; Sasisekharan, V.; Sasisekharan, R. Structural determinants for naturally evolving H5N1 hemagglutinin to switch its receptor specificity. Cell 2013, 153, 1475–1485. [Google Scholar] [CrossRef] [PubMed]
- Gao, Y.; Zhang, Y.; Shinya, K.; Deng, G.; Jiang, Y.; Li, Z.; Guan, Y.; Tian, G.; Li, Y.; Shi, J.; et al. Identification of amino acids in HA and PB2 critical for the transmission of H5N1 avian influenza viruses in a mammalian host. PLoS Pathog. 2009, 5, e1000709. [Google Scholar] [CrossRef] [PubMed]
- Herfst, S.; Schrauwen, E.J.; Linster, M.; Chutinimitkul, S.; de Wit, E.; Munster, V.J.; Sorrell, E.M.; Bestebroer, T.M.; Burke, D.F.; Smith, D.J.; et al. Airborne transmission of influenza A/H5N1 virus between ferrets. Science 2012, 336, 1534–1541. [Google Scholar] [CrossRef] [PubMed]
- Imai, M.; Watanabe, T.; Hatta, M.; Das, S.C.; Ozawa, M.; Shinya, K.; Zhong, G.; Hanson, A.; Katsura, H.; Watanabe, S.; et al. Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature 2012, 486, 420–428. [Google Scholar] [CrossRef] [PubMed]
- Abdelwhab, E.M.; Hafez, H.M. An overview of the epidemic of highly pathogenic H5N1 avian influenza virus in Egypt: Epidemiology and control challenges. Epidemiol. Infect. 2011, 139, 647–657. [Google Scholar] [CrossRef] [PubMed]
- Matrosovich, M.; Zhou, N.; Kawaoka, Y.; Webster, R. The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J. Virol. 1999, 73, 1146–1155. [Google Scholar] [PubMed]
- Kandeil, A.; Kayed, A.; Moatasim, Y.; Webby, R.J.; McKenzie, P.P.; Kayali, G.; Ali, M.A. Genetic characterization of highly pathogenic avian influenza A H5N8 viruses isolated from wild birds in Egypt. J. Gen. Virol. 2017, 98, 1573–1586. [Google Scholar] [CrossRef] [PubMed]
- Yehia, N.; Naguib, M.M.; Li, R.; Hagag, N.; El-Husseiny, M.; Mosaad, Z.; Nour, A.; Rabea, N.; Hasan, W.M.; Hassan, M.K.; et al. Multiple introductions of reassorted highly pathogenic avian influenza viruses (H5N8) clade 188.8.131.52b causing outbreaks in wild birds and poultry in Egypt. Infect. Genet. Evol. 2018, 58, 56–65. [Google Scholar] [CrossRef] [PubMed]
- Afifi, M.A.; El-Kady, M.F.; Zoelfakar, S.A.; Abdel-Moneim, A.S. Serological surveillance reveals widespread influenza A H7 and H9 subtypes among chicken flocks in Egypt. Trop. Anim. Health Prod. 2013, 45, 687–690. [Google Scholar] [CrossRef] [PubMed]
- Monne, I.; Hussein, H.A.; Fusaro, A.; Valastro, V.; Hamoud, M.M.; Khalefa, R.A.; Dardir, S.N.; Radwan, M.I.; Capua, I.; Cattoli, G. H9N2 influenza A virus circulates in H5N1 endemically infected poultry population in Egypt. Influenza Other Respir. Viruses 2013, 7, 240–243. [Google Scholar] [CrossRef] [PubMed]
- Arafa, A.S.; Hagag, N.M.; Yehia, N.; Zanaty, A.M.; Naguib, M.M.; Nasef, S.A. Effect of cocirculation of highly pathogenic avian influenza H5N1 subtype with low pathogenic H9N2 subtype on the spread of infections. Avian Dis. 2012, 56, 849–857. [Google Scholar] [CrossRef] [PubMed]
- El-Zoghby, E.F.; Arafa, A.S.; Hassan, M.K.; Aly, M.M.; Selim, A.; Kilany, W.H.; Selim, U.; Nasef, S.; Aggor, M.G.; Abdelwhab, E.M.; et al. Isolation of H9N2 avian influenza virus from bobwhite quail (Colinus virginianus) in Egypt. Arch. Virol. 2012, 157, 1167–1172. [Google Scholar] [CrossRef] [PubMed]
- Kandeil, A.; El-Shesheny, R.; Maatouq, A.M.; Moatasim, Y.; Shehata, M.M.; Bagato, O.; Rubrum, A.; Shanmuganatham, K.; Webby, R.J.; Ali, M.A.; et al. Genetic and antigenic evolution of H9N2 avian influenza viruses circulating in Egypt between 2011 and 2013. Arch. Virol. 2014, 159, 2861–2876. [Google Scholar] [CrossRef] [PubMed]
- Naguib, M.M.; Arafa, A.S.; El-Kady, M.F.; Selim, A.A.; Gunalan, V.; Maurer-Stroh, S.; Goller, K.V.; Hassan, M.K.; Beer, M.; Abdelwhab, E.M.; et al. Evolutionary trajectories and diagnostic challenges of potentially zoonotic avian influenza viruses H5N1 and H9N2 co-circulating in Egypt. Infect. Genet. Evol. 2015, 34, 278–291. [Google Scholar] [CrossRef] [PubMed]
- Kandeil, A.; Mostafa, A.; El-Shesheny, R.; El-Taweel, A.N.; Gomaa, M.; Galal, H.; Kayali, G.; Ali, M.A. Avian influenza H5N1 vaccination efficacy in Egyptian backyard poultry. Vaccine 2017, 35, 6195–6201. [Google Scholar] [CrossRef] [PubMed]
- Gomaa, M.R.; Kayed, A.S.; Elabd, M.A.; Zeid, D.A.; Zaki, S.A.; El Rifay, A.S.; Sherif, L.S.; McKenzie, P.P.; Webster, R.G.; Webby, R.J.; et al. Avian influenza A(H5N1) and A(H9N2) seroprevalence and risk factors for infection among Egyptians: A prospective, controlled seroepidemiological study. J. Infect. Dis. 2015, 211, 1399–1407. [Google Scholar] [CrossRef] [PubMed]
- Naguib, M.M.; Arafa, A.-S.; Parvin, R.; Beer, M.; Vahlenkamp, T.; Harder, T.C. Insights into genetic diversity and biological propensities of potentially zoonotic avian influenza H9N2 viruses circulating in Egypt. Virology 2017, 511, 165–174. [Google Scholar] [CrossRef] [PubMed]
- Kandeil, A.; El-Shesheny, R.; Maatouq, A.; Moatasim, Y.; Cai, Z.; McKenzie, P.; Webby, R.; Kayali, G.; Ali, M.A. Novel reassortant H9N2 viruses in pigeons and evidence for antigenic diversity of H9N2 viruses isolated from quails in Egypt. J. Gen. Virol. 2017, 98, 548–562. [Google Scholar] [CrossRef] [PubMed]
- Adel, A.; Arafa, A.; Hussein, H.A.; El-Sanousi, A.A. Molecular and antigenic traits on hemagglutinin gene of avian influenza H9N2 viruses: Evidence of a new escape mutant in Egypt adapted in quails. Res. Vet. Sci. 2017, 112, 132–140. [Google Scholar] [CrossRef] [PubMed]
- Abdelwhab, E.M.; Arafa, A.S.; Stech, J.; Grund, C.; Stech, O.; Graeber-Gerberding, M.; Beer, M.; Hassan, M.K.; Aly, M.M.; Harder, T.C.; et al. Diversifying evolution of highly pathogenic H5N1 avian influenza virus in Egypt from 2006 to 2011. Virus Genes 2012, 45, 14–23. [Google Scholar] [CrossRef] [PubMed]
- Young, S.G.; Carrel, M.; Malanson, G.P.; Ali, M.A.; Kayali, G. Predicting avian influenza co-infection with H5N1 and H9N2 in Northern Egypt. Int. J. Environ. Res. Public Health 2016, 13, 886. [Google Scholar] [CrossRef] [PubMed]
- Neumann, G.; Macken, C.A.; Karasin, A.I.; Fouchier, R.A.; Kawaoka, Y. Egyptian H5N1 influenza viruses-cause for concern? PLoS Pathog. 2012, 8, e1002932. [Google Scholar] [CrossRef] [PubMed]
- Naguib, M.M.; Reiner, U.; Kasbohm, E.; Eng, C.L.P.; Hoffmann, D.; Grund, C.; Beer, M.; Harder, T.C. Natural reassortants of potentially zoonotic avian influenza viruses H5N1 and H9N2 from Egypt display distinct pathogenic phenotypes in experimentally infected chickens and ferrets. J. Virol. 2017, 91, e01300-17. [Google Scholar] [CrossRef] [PubMed]
- Abdel-Moneim, A.S.; Afifi, M.A.; El-Kady, M.F. Isolation and mutation trend analysis of influenza A virus subtype H9N2 in Egypt. Virol. J. 2012, 9, 173. [Google Scholar] [CrossRef] [PubMed]
- Taha, F.A. Poultry Sector in Middle-Income Countries and Its Feed Requirements: The Case of Egypt; United States Department of Agriculture, Economic Research Service: Washington, DC, USA, 2003; p. 47. [Google Scholar]
- Gilbert, M.; Golding, N.; Zhou, H.; Wint, G.R.; Robinson, T.P.; Tatem, A.J.; Lai, S.; Zhou, S.; Jiang, H.; Guo, D.; et al. Predicting the risk of avian influenza A H7N9 infection in live-poultry markets across Asia. Nat. Commun. 2014, 5, 4116. [Google Scholar] [CrossRef] [PubMed]
- ElMasry, I.; Elshiekh, H.; Abdlenabi, A.; Saad, A.; Arafa, A.; Fasina, F.O.; Lubroth, J.; Jobre, Y.M. Avian influenza H5N1 surveillance and its dynamics in poultry in live bird markets, Egypt. Transbound. Emerg. Dis. 2017, 64, 805–814. [Google Scholar] [CrossRef] [PubMed]
- Osman, N.; Sultan, S.; Ahmed, A.I.; Ibrahim, R.S.; El-Wanes, S.A.; Ibrahim, E.M. Molecular epidemiology of avian influenza virus and incidence of H5 and H9 virus subtypes among poultry in Egypt in 2009–2011. Acta Virol. 2015, 59, 27–32. [Google Scholar] [CrossRef] [PubMed]
- Kandeel, A.; Manoncourt, S.; Mohamed Ahmed, A.N.; El-Refaie, S.; Essmat, H.; Tjaden, J.; de Mattos, C.C.; Earhart, K.C.; Marfin, A.A.; El-Sayed, N. Zoonotic transmission of avian influenza virus (H5N1), Egypt, 2006–2009. Emerg. Infect. Dis. 2010, 16, 1101–1107. [Google Scholar] [CrossRef] [PubMed]
- Hulse-Post, D.J.; Sturm-Ramirez, K.M.; Humberd, J.; Seiler, P.; Govorkova, E.A.; Ktauss, S.; Scholtissek, C.; Puthavathana, P.; Buranathai, C.; Nguyen, T.D.; et al. Role of domestic ducks in the propagation and biological evolution of highly pathogenic H5N1 influenza viruses in Asia. Proc. Natl. Acad. Sci. USA 2005, 102, 10682–10687. [Google Scholar] [CrossRef] [PubMed]
- Ali, A.M.; Ankers, P.; DeHaan, N.; Saad, A.; Hussein, S.; Lubroth, J.; Jobre, Y. Mapping Influenza A (H5N1) Virus Transmission Pathways and Critical Control Points in Egypt; FAO Animal Production and Health Working Paper 11; Food and Agriculture Organization of the United Nations: Rome, Italy, 2013; Available online: http://www.fao.org/docrep/017/i3272e/i3272e.pdf (accessed on 15 January 2018).
- Kayali, G.; El-Shesheny, R.; Kutkat, M.A.; Kandeil, A.; Mostafa, A.; Ducatez, M.F.; McKenzie, P.P.; Govorkova, E.A.; Nasraa, M.H.; Webster, R.G.; et al. Continuing threat of influenza (H5N1) virus circulation in Egypt. Emerg. Infect. Dis. 2011, 17, 2306–2308. [Google Scholar] [CrossRef] [PubMed]
- World Health Organization. Antigenic and Genetic Characteristics of A(H5N1), A(H7N3), A(H9N2) and Variant Influenza Viruses and Candidate Vaccine Viruses Developed for Potential Use in Human Vaccines; WHO: Geneva, Switzerland, 2013; Available online: http://www.who.int/influenza/vaccines/virus/characteristics_virus_vaccines/en/ (accessed on 20 January 2018).
- Ma, W.; Kahn, R.E.; Richt, J.A. The pig as a mixing vessel for influenza viruses: Human and veterinary implications. J. Mol. Genet. Med. 2008, 3, 158–166. [Google Scholar] [CrossRef] [PubMed]
- El-Sayed, A.; Awad, W.; Fayed, A.; Hamann, H.P.; Zschock, M. Avian influenza prevalence in pigs, Egypt. Emerg. Infect. Dis. 2010, 16, 726–727. [Google Scholar] [CrossRef] [PubMed]
- Swayne, D.E.; Pavade, G.; Hamilton, K.; Vallat, B.; Miyagishima, K. Assessment of national strategies for control of high-pathogenicity avian influenza and low-pathogenicity notifiable avian influenza in poultry, with emphasis on vaccines and vaccination. Rev. Sci. Tech. 2011, 30, 839–870. [Google Scholar] [CrossRef] [PubMed]
- Kayali, G.; Kandeil, A.; El-Shesheny, R.; Kayed, A.S.; Maatouq, A.M.; Cai, Z.; McKenzie, P.P.; Webby, R.J.; El Refaey, S.; Kandeel, A.; et al. Avian influenza A(H5N1) virus in Egypt. Emerg. Infect. Dis. 2016, 22, 379–388. [Google Scholar] [CrossRef] [PubMed]
- Swayne, D.E. Impact of vaccines and vaccination on global control of avian influenza. Avian Dis. 2012, 56, 818–828. [Google Scholar] [CrossRef] [PubMed]
- Swayne, D.E.; Spackman, E.; Pantin-Jackwood, M.P. Success factors for avian influenza vaccine use in poultry and potential impact at the wild bird-agricultural interface. Ecohealth 2014, 11, 94–108. [Google Scholar] [CrossRef] [PubMed]
- Khalenkov, A.; Perk, S.; Panshin, A.; Golender, N.; Webster, R.G. Modulation of the severity of highly pathogenic H5N1 influenza in chickens previously inoculated with Israeli H9N2 influenza viruses. Virology 2009, 383, 32–38. [Google Scholar] [CrossRef] [PubMed]
- Naguib, M.M.; Grund, C.; Arafa, A.S.; Abdelwhab, E.M.; Beer, M.; Harder, T.C. Heterologous post-infection immunity against Egyptian avian influenza virus (AIV) H9N2 modulates the course of subsequent infection by highly pathogenic AIV H5N1, but vaccination immunity does not. J. Gen. Virol. 2017, 98, 1169–1173. [Google Scholar] [CrossRef] [PubMed]
- Seo, S.H.; Webster, R.G. Cross-reactive, cell-mediated immunity and protection of chickens from lethal H5N1 influenza virus infection in Hong Kong poultry markets. J. Virol. 2001, 75, 2516–2525. [Google Scholar] [CrossRef] [PubMed]
- World Organisation for Animal Health (OIE) Avian Influenza. 2015. Available online: http://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/2.03.04_AI.pdf (accessed on 27 December 2017).
- Eggert, D.; Swayne, D.E. Single vaccination provides limited protection to ducks and geese against H5N1 high pathogenicity avian influenza virus. Avian Dis. 2010, 54, 1224–1229. [Google Scholar] [CrossRef] [PubMed]
- Chen, H.; Bu, Z. Development and application of avian influenza vaccines in China. Curr. Top. Microbiol. Immunol. 2009, 333, 153–162. [Google Scholar] [PubMed]
- Ge, J.; Deng, G.; Wen, Z.; Tian, G.; Wang, Y.; Shi, J.; Wang, X.; Li, Y.; Hu, S.; Jiang, Y.; et al. Newcastle disease virus-based live attenuated vaccine completely protects chickens and mice from lethal challenge of homologous and heterologous H5N1 avian influenza viruses. J. Virol. 2007, 81, 150–158. [Google Scholar] [CrossRef] [PubMed]
- Villarreal, C. Avian influenza in Mexico. Rev. Sci. Tech. 2009, 28, 261–265. [Google Scholar] [CrossRef] [PubMed]
- Kim, S.H.; Paldurai, A.; Samal, S.K. A novel chimeric Newcastle disease virus vectored vaccine against highly pathogenic avian influenza virus. Virology 2017, 503, 31–36. [Google Scholar] [CrossRef] [PubMed]
- Kim, S.H.; Samal, S.K. Newcastle disease virus as a vaccine vector for development of human and veterinary vaccines. Viruses 2016, 8, 183. [Google Scholar] [CrossRef] [PubMed]
- Kim, S.H.; Samal, S.K. Heterologous prime-boost immunization of Newcastle disease virus vectored vaccines protected broiler chickens against highly pathogenic avian influenza and Newcastle disease viruses. Vaccine 2017, 35, 4133–4139. [Google Scholar] [CrossRef] [PubMed]
- Hassan, K.E.; Shany, S.A.S.; Ali, A.; Dahshan, A.-H.M.; El-Sawah, A.A.; El-Kady, M.F. Prevalence of avian respiratory viruses in broiler flocks in Egypt. Poult. Sci. 2016, 95, 1271–1280. [Google Scholar] [CrossRef] [PubMed]
- Mansour, S.M.G.; Mohamed, F.F.; Eid, A.A.M.; Mor, S.K.; Goyal, S.M. Co-circulation of paramyxo- and influenza viruses in pigeons in Egypt. Avian Pathol. 2017, 46, 367–375. [Google Scholar] [CrossRef] [PubMed]
- Fasanmi, O.G.; Odetokun, I.A.; Balogun, F.A.; Fasina, F.O. Public health concerns of highly pathogenic avian influenza H5N1 endemicity in Africa. Vet. World 2017, 10, 1194–1204. [Google Scholar] [CrossRef] [PubMed]
- Food and Agriculture Organization of the United Nations (FAO). Biosecurity Guide for Live Poultry Markets; FAO Animal Production and Health Guidelines, No. 17; FAO: Rome, Italy, 2015. [Google Scholar]
Table 1. Evolution of the Gs/GD lineage of the highly pathogenic avian influenza (HPAI) H5 subtype.
|1.1.2||Poultry, human *||Cambodia|
|Poultry, human||Viet Nam|
|Poultry, wild bird, human||China|
|Wild birds, poultry||India|
|Poultry, wild birds||Nepal|
|184.108.40.206 (H5N1/N6)||Poultry, wild birds||China|
|220.127.116.11 (H5N6)||Poultry||Lao PDR|
|Poultry, wild birds||South Korea|
|Poultry, wild birds||Japan|
|18.104.22.168 (H5N8)||Poultry, wild birds||Germany|
|Poultry, wild birds||Netherlands|
|Poultry, wild birds||UK|
|22.214.171.124 (H5N2/N8)||Poultry, wild birds||US|
|Poultry, wild birds||Canada|
|126.96.36.199 (H5N1/N6/N8)||Poultry, human||China|
|Poultry, wild birds||South Korea|
* Human cases of H5N1 infection reported to WHO.
Table 2. Clades of H9N2 viruses isolated from poultry.
|G1-like||A/quail/Hong Kong/G1/97||China, Bangladesh, Pakistan, India, Middle East, Egypt|
|Y439-like||A/duck/Hong Kong/Y439/97||South Korea|
Table 3. Cumulative number of confirmed human cases for avian influenza A(H5N1) reported to WHO, 2003–2017.
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