Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection and Processing
2.2. Screening and GoCV Genome Recovery
2.3. Bioinformatic Analysis
3. Results and Discussion
3.1. GoCV in Domestic and Wild Geese in Poland
3.2. DNA Secondary Structure Analysis of GoCV Genomes
4. Conclusions
Supplementary Materials
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Sample ID | Sampling Date | Species | Common Name | Age | Health Status | Broad Spectrum Primer Positive | GoCV Positive | GenBank Accession # |
---|---|---|---|---|---|---|---|---|
G1 | 21 November 2014 | Anser fabalis | Bean goose | A | H | Yes | Yes | KT808664 |
G2 | 3 December 2014 | Anser fabalis | Bean goose | A | H | No | No | N/A |
G3 | 3 December 2014 | Anser fabalis | Bean goose | A | H | Yes | No | N/A |
G4 | 3 December 2014 | Anser albifrons | White fronted goose | Y | H | Yes | Yes | KT808665 |
G5 | 20 November 2014 | Anser anser | Wild Greylag goose | A | H | Yes | No | N/A |
G6 | 20 November 2014 | Anser anser | Wild Greylag goose | Y | H | Yes | Yes | KT808666 |
G7 | 20 November 2014 | Anser anser | Wild Greylag goose | A | H | No | No | N/A |
G8 | 20 November 2014 | Anser anser | Wild Greylag goose | A | H | Yes | No | N/A |
G9 | 20 November 2014 | Anser anser | Wild Greylag goose | A | H | Yes | Yes | KT808667 |
G10 | 20 November 2014 | Anser albifrons | White fronted goose | A | H | No | No | N/A |
G11 | 21 November 2014 | Anser albifrons | White fronted goose | Y | H | No | No | N/A |
G12 | 21 November 2014 | Anser fabalis | Bean goose | A | H | Yes | No | N/A |
G13 | 21 November 2014 | Anser fabalis | Bean goose | A | H | No | No | N/A |
G14 | 21 November 2014 | Anser fabalis | Bean goose | A | H | No | No | N/A |
G15 | 21 November 2014 | Anser fabalis | Bean goose | A | H | Yes | Yes | KT808668 |
G16 | 21 November 2014 | Anser fabalis | Bean goose | A | H | Yes | Yes | KT808669 |
G17 | 21 November 2014 | Anser fabalis | Bean goose | A | H | No | No | N/A |
G18 | 22 November 2014 | Anser anser | Wild Greylag goose | A | H | Yes | No | N/A |
G19 | 22 November 2014 | Anser anser | Wild Greylag goose | A | H | Yes | Yes | KT808670 |
G20 | 22 November 2014 | Anser anser | Wild Greylag goose | A | H | Yes | No | N/A |
G21 | 23 November 2014 | Anser albifrons | White fronted goose | A | H | Yes | No | N/A |
G22 | 23 November 2014 | Anser fabalis | Bean goose | A | H | No | No | N/A |
G23 | 23 November 2014 | Anser fabalis | Bean goose | A | H | No | No | N/A |
G24 | 23 November 2014 | Anas platyrhynchos | Mallard duck | A | H | Yes | No | N/A |
DG1 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808650 |
DG2 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | No | N/A |
DG3 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808651 |
DG4 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808652 |
DG5 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808653 |
DG6 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808654 |
DG7 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808655 |
DG8 | 6 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808656 |
DG9 | 5 December 2014 | Anser anser | Domestic goose | A * | H | Yes | No | N/A |
DG10 | 5 December 2014 | Anser anser | Domestic goose | A * | H | Yes | No | N/A |
DG11 | 5 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808657 |
DG12 | 5 December 2014 | Anser anser | Domestic goose | A * | H | Yes | No | N/A |
DG13 | 5 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808658 |
DG14 | 5 December 2014 | Anser anser | Domestic goose | A * | H | Yes | Yes | KT808659 |
DG15 | 5 June 2015 | Anser anser | Domestic goose | Y ** | S *** | Yes | Yes | KT808660 |
DG16 | 5 June 2015 | Anser anser | Domestic goose | Y ** | S *** | Yes | Yes | KT808661 |
DG17 | 5 June 2015 | Anser anser | Domestic goose | Y ** | S *** | Yes | Yes | KT808662 |
DG18 | 5 June 2015 | Anser anser | Domestic goose | Y ** | S *** | Yes | Yes | KT808663 |
DG19 | 5 June 2015 | Anser anser | Domestic goose | Y ** | S *** | Yes | No | N/A |
Accession | Description | Country | Host | Genotype |
---|---|---|---|---|
AF418552 | Goose circovirus isolate TW | Taiwan | Anser anser | I |
AF536931 | Goose circovirus isolate TW1/2001 | Taiwan | Anser anser | I |
AF536932 | Goose circovirus isolate TW2/2001 | Taiwan | Anser anser | I |
AF536933 | Goose circovirus isolate TW3/2001 | Taiwan | Anser anser | I |
AF536934 | Goose circovirus isolate TW4/2001 | Taiwan | Anser anser | I |
AF536935 | Goose circovirus isolate TW5/2001 | Taiwan | Anser anser | I |
AF536936 | Goose circovirus isolate TW6/2001 | Taiwan | Anser anser | XI |
AF536937 | Goose circovirus isolate TW7/2001 | Taiwan | Anser anser | I |
AF536938 | Goose circovirus isolate TW8/2001 | Taiwan | Anser anser | XI |
AF536939 | Goose circovirus isolate TW9/2001 | Taiwan | Anser anser | XI |
AF536940 | Goose circovirus isolate TW10/2001 | Taiwan | Anser anser | I |
AF536941 | Goose circovirus isolate TW11/2001 | Taiwan | Anser anser | I |
AJ304456 | Goose circovirus isolate DE | Germany | Anser sp. | XII |
AY633653 | Goose circovirus isolate yk1 | China | Anser anser | IX |
DQ192279 | Goose circovirus isolate yk2 | China: Zhejiang | Anser anser | IX |
DQ192280 | Goose circovirus isolate yk3 | China: Zhejiang | Anser anser | IX |
DQ192281 | Goose circovirus isolate yk4 | China | Anser anser | VIII |
DQ192282 | Goose circovirus isolate xs1 | China | Anser anser | IX |
DQ192283 | Goose circovirus isolate xs2 | China | Anser anser | III |
DQ192284 | Goose circovirus isolate xs3 | China | Anser anser | X |
DQ192285 | Goose circovirus isolate xs4 | China | Anser anser | III |
DQ192286 | Goose circovirus isolate xs5 | China | Anser anser | X |
DQ192287 | Goose circovirus isolate xs6 | China | Anser anser | X |
GU320569 | Goose circovirus isolate JX1 | China: Jiangxi | Anser anser | IX |
KP203866 | Goose circovirus isolate 1020111GB | Taiwan: Yunlin | Coscoroba coscoroba | XI |
KP203867 | Goose circovirus isolate 1021024G | Taiwan: Yunlin | Coscoroba coscoroba | XI |
KP203868 | Goose circovirus isolate GB20-13 | Taiwan: Kaohsiung | Coscoroba coscoroba | XI |
KP203869 | Goose circovirus isolate GB21-9 | Taiwan: Pingtung | Coscoroba coscoroba | XI |
KP203870 | Goose circovirus isolate GB25-8 | Taiwan: Pingtung | Coscoroba coscoroba | XI |
KP203871 | Goose circovirus isolate GB26-15 | Taiwan: Changhua | Coscoroba coscoroba | XI |
KP203872 | Goose circovirus isolate GB27-20 | Taiwan: Yunlin | Anser cygnoides | I |
KP229363 | Goose circovirus isolate CF13001 | Taiwan: Yunlin | Coscoroba coscoroba | XI |
KP229370 | Goose circovirus isolate CD13088 | Taiwan: Chiayi | Coscoroba coscoroba | XI |
KP229371 | Goose circovirus isolate CPA13007-1 | Taiwan | Coscoroba coscoroba | II |
KP229372 | Goose circovirus isolate CJ14010 | Taiwan: Chiayi | Coscoroba coscoroba | XI |
KP229373 | Goose circovirus isolate CPA13007-2 | Taiwan | Coscoroba coscoroba | XI |
KP229374 | Goose circovirus isolate CPA14012 | Taiwan | Coscoroba coscoroba | II |
KR869727 | Goose circovirus isolate 2GK | Poland | Anser anser | XVII |
KT207809 | Goose circovirus isolate TD254-2014 | China | Anser anser | IX |
KT387277 | Goose circovirus isolate Shandong | China | Anser anser | IX |
KT443969 | Goose circovirus isolate TD227/2013 | China | Anser anser | IX |
KT443970 | Goose circovirus isolate TD265/2013 | China | Anser anser | IX |
KT808650 | Goose circovirus isolate DG1 | Poland | Anser anser | XIV |
KT808651 | Goose circovirus isolate DG3 | Poland | Anser anser | XV |
KT808652 | Goose circovirus isolate DG4 | Poland | Anser anser | XV |
KT808653 | Goose circovirus isolate DG5 | Poland | Anser anser | XIII |
KT808654 | Goose circovirus isolate DG6 | Poland | Anser anser | XV |
KT808655 | Goose circovirus isolate DG7 | Poland | Anser anser | XV |
KT808656 | Goose circovirus isolate DG8 | Poland | Anser anser | XV |
KT808657 | Goose circovirus isolate DG11 | Poland | Anser anser | XVI |
KT808658 | Goose circovirus isolate DG13 | Poland | Anser anser | XV |
KT808659 | Goose circovirus isolate DG14 | Poland | Anser anser | XV |
KT808660 | Goose circovirus isolate DG15 | Poland | Anser anser | IV |
KT808661 | Goose circovirus isolate DG16 | Poland | Anser anser | IV |
KT808662 | Goose circovirus isolate DG17 | Poland | Anser anser | IV |
KT808663 | Goose circovirus isolate DG18 | Poland | Anser anser | IV |
KT808664 | Goose circovirus isolate G1 | Poland | Anser fabalis | V |
KT808665 | Goose circovirus isolate G4 | Poland | Anser albifrons | V |
KT808666 | Goose circovirus isolate G6 | Poland | Anser anser | VII |
KT808667 | Goose circovirus isolate G9 | Poland | Anser anser | V |
KT808668 | Goose circovirus isolate G15 | Poland | Anser fabalis | V |
KT808669 | Goose circovirus isolate G16 | Poland | Anser fabalis | V |
KT808670 | Goose circovirus isolate G19 | Poland | Anser anser | VI |
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Stenzel, T.; Dziewulska, D.; Muhire, B.M.; Hartnady, P.; Kraberger, S.; Martin, D.P.; Varsani, A. Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland. Viruses 2018, 10, 107. https://doi.org/10.3390/v10030107
Stenzel T, Dziewulska D, Muhire BM, Hartnady P, Kraberger S, Martin DP, Varsani A. Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland. Viruses. 2018; 10(3):107. https://doi.org/10.3390/v10030107
Chicago/Turabian StyleStenzel, Tomasz, Daria Dziewulska, Brejnev M. Muhire, Penelope Hartnady, Simona Kraberger, Darren P. Martin, and Arvind Varsani. 2018. "Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland" Viruses 10, no. 3: 107. https://doi.org/10.3390/v10030107