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Article

Total Synthesis of the Marine Cyclic Depsipeptide Lagunamide D

1
School of Pharmacy and Food Engineering, Wuyi University, Jiangmen 529020, China
2
State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School, Shenzhen, 518055, China
3
Qian Yan (Shenzhen) Pharmatech. Ltd., Shenzhen 518172, China
4
Center for Bioactive Natural Molecules and Innovative Drugs, and Guangdong Province Key Laboratory of Pharmacodynamic Constituents of TCM and New Drugs Research, College of Pharmacy, Jinan University, Guangzhou 510632, China
*
Authors to whom correspondence should be addressed.
Mar. Drugs 2025, 23(3), 99; https://doi.org/10.3390/md23030099
Submission received: 31 January 2025 / Revised: 17 February 2025 / Accepted: 21 February 2025 / Published: 24 February 2025

Abstract

:
Lagunamide D is a structurally distinct 26-membered cytotoxic cyclic depsipeptide, originally isolated from a marine cyanobacterium. It exhibits potent antiproliferative activity in the low nanomolar range against A549 human lung adenocarcinoma cells and HCT116 colon cancer cells. A significant challenge associated with lagunamide D is its propensity for intramolecular acyl migration, which leads to the formation of a contracted 24-membered analog, lagunamide D′. This structural rearrangement complicates its isolation, characterization, and synthesis. In this study, the total synthesis of lagunamide D was achieved in a 14-step longest linear sequence, starting from the known intermediate 17, with an overall yield of 4.6%. The synthetic strategy involved several key transformations, including Ghosh’s TiCl4-promoted anti-aldol reaction, Corey–Bakshi–Shibata reduction (CBS reduction), cross-metathesis, Pinnick oxidation, and Yamaguchi esterification. Furthermore, this synthetic effort unambiguously confirmed the stereochemistry of the natural product.

Graphical Abstract

1. Introduction

Natural products and their derivatives have long been recognized as invaluable sources of pharmaceuticals, playing a pivotal role in drug discovery and development. Many modern medicines are derived from natural compounds, demonstrating their significant contribution to human health [1]. While terrestrial plants, animals, and microorganisms have traditionally served as primary sources for natural product-based drugs, marine-derived compounds have garnered increasing attention due to their exceptional chemical diversity, unique structural features, and promising pharmacological potential [2,3,4]. The harsh and competitive marine environment has driven the evolution of highly specialized secondary metabolites with novel mechanisms of action, making them particularly attractive candidates for pharmaceutical development.
Several marine-derived drugs have already received regulatory approval for the treatment of various diseases, including cancer, chronic pain, and neurodegenerative disorders such as Alzheimer’s disease. Notable examples include Cytarabine (Cytosar-U®), an anti-leukemic agent; Trabectedin (Yondelis®), used in soft tissue sarcoma and ovarian cancer; Ziconotide (Prialt®), a potent analgesic; Eribulin mesylate (Halaven®), a microtubule inhibitor for metastatic breast cancer; Plitidepsin (Aplidin®), with antiviral and anticancer properties; Brentuximab vedotin (Adcetris®), an antibody–drug conjugate for lymphomas; and Omega-3-Acid ethyl esters (Lovaza®), used in cardiovascular disease management [5]. Beyond these approved drugs, more than 20 marine-derived compounds are currently progressing through various phases of clinical trials, further highlighting their potential in therapeutic applications [6,7,8].
Despite their immense pharmaceutical promise, the development of marine natural products faces significant challenges, particularly regarding their limited natural availability. Many bioactive compounds are produced in minute quantities by marine organisms, making large-scale extraction impractical and unsustainable. To address this issue, researchers have explored alternative strategies such as total chemical synthesis, semi-synthesis, and microbial fermentation to ensure a reliable supply. While biosynthetic technologies, including genetic engineering and heterologous expression, offer promising avenues for sustainable production, these approaches also present technical and logistical challenges [9]. Continued advancements in synthetic methodologies and biotechnological innovations are therefore crucial for unlocking the full potential of marine-derived pharmaceuticals.
Lagunamide D, a novel cytotoxic cyclic depsipeptide, was first isolated in 2019 by Luesch’s research group from a marine cyanobacterium collected at Loggerhead Key in Dry Tortugas, Florida. The compound was obtained in an extremely low isolation yield of 0.003% [10], highlighting the challenge of natural product extraction. Lagunamide D represents a new member of the lagunamide family, expanding the structural diversity within this class of bioactive molecules [11,12] (Figure 1).
The planar structure of lagunamide D was elucidated through a comprehensive analysis of 1D and 2D nuclear magnetic resonance (NMR) spectra, complemented by high-resolution mass spectrometry (HRMS) data. Notably, the absolute stereochemistry of the hydroxyl groups at positions C-37 and C-39 within the polyketide segment was determined using a modified Mosher method. Meanwhile, the configuration of the methyl group at position C-38 was deduced through a combination of Kishi’s NMR database [13,14] and detailed comparisons of hydrogen peak shapes and splitting patterns in the 1H NMR spectrum with those observed in lagunamide A. These rigorous structural studies provided valuable insight into the stereochemical framework of lagunamide D. A particularly intriguing observation was made during high-performance liquid chromatography (HPLC) separation, where intramolecular ester exchange led to the formation of a cyclization product, lagunamide D′. This transformation involved acyl migration within the macrocyclic core, converting the native 26-membered macrocycle into a contracted 24-membered analog [10] (Figure 1). Such structural rearrangements underscore the dynamic nature of cyclic depsipeptides and pose additional considerations for their synthetic and biological studies. In terms of biological activity, lagunamide D exhibits potent antiproliferative effects against human cancer cell lines. It demonstrates strong cytotoxicity towards A549 human lung adenocarcinoma cells (IC50 = 7.1 ± 1.7 nM) and HCT116 colon cancer cells (IC50 = 5.1 nM) [15], suggesting its potential as a promising lead compound for anticancer drug development. Given this remarkable bioactivity and its complex structural framework, we aim to undertake a total synthesis of lagunamide D. This effort will not only confirm its stereochemistry with absolute certainty but also provide a sustainable and scalable synthetic route to facilitate further medicinal chemistry investigations.
The key synthetic challenges associated with the lagunamide family primarily involve the construction of the anti-anti-syn configuration at the C37–C40 stereogenic centers and the incorporation of the unsaturated ester subunit within the fatty acid fragment (highlighted in red, Figure 1). In 2012, Ye and co-workers reported the first total synthesis and stereochemical revision of lagunamide A [16], highlighting the use of a double asymmetric Brown crotylboration to establish the required anti-anti-syn configuration of the C37–C40 stereogenic centers, as well as the Horner–Wadsworth–Emmons (HWE) reaction to install the α,β-unsaturated carboxylic acid unit within the polyketide chain. Lin’s group achieved the second total synthesis of lagunamide A [17], employing an asymmetric Paterson anti-aldol condensation to establish the C38–C39 stereogenic centers, followed by stereoselective allylation to install the required C37 chiral center. Furthermore, the α,β-unsaturated carboxylic acid unit was constructed via a cross-metathesis (CM) reaction. In 2018, Kazmaier and co-workers reported the third total synthesis of lagunamide A [18], utilizing a sequence of six iterative Matteson homologation steps and subsequent oxidation to generate the C37–C40 stereogenic centers. This was followed by the installation of the α,β-unsaturated ester unit through an HWE reaction. In 2016, Oishi et al. reported the first total synthesis of odoamide (lagunamide C) [19,20], featuring the use of an Evans syn-aldol reaction to establish the C39–C40 stereocenters, followed by a substrate-controlled Mukaiyama aldol reaction and a subsequent Mitsunobu reaction to install the C37 chiral center and the α,β-unsaturated ester. Currently, no reports on the total synthesis of lagunamide D exist. For the total synthesis of lagunamide D, we envisioned that the C38–C39 chiral centers could be established through an alternative anti-aldol reaction, such as the TiCl4-promoted protocol developed by Ghosh, while the C37 stereocenter could be installed via asymmetric reduction of the corresponding ketone. To the best of our knowledge, this approach has not been employed in previous lagunamide syntheses.
Our retrosynthetic analysis is illustrated in Scheme 1. The key transformation in our strategy is the macrocyclization between ʟ-Ile and N-Me-ʟ-Ala, which serves as the pivotal step in constructing the macrocyclic core of the target molecule. Following this, we implemented a strategic disconnection at the ester bond linking the α-hydroxy group of the 2-hydroxy-3-methylpentanoic acid moiety and the unsaturated acid. This approach effectively simplifies the molecule into two key intermediates: intermediate 2 and the polyketide subunit 3, both possessing a comparable level of complexity. The formation of the ester bond in fragment 3 can be efficiently achieved through the reaction of an acyl chloride derivative with the corresponding alcohol. Meanwhile, the synthesis of the unsaturated acid is planned via a cross-metathesis reaction [21,22], enabling fragment 3 to be derived from a simpler precursor, the alcohol fragment 4. The construction of fragment 4 is envisioned through a highly stereoselective route. Specifically, it can be assembled from intermediates 6 and 7 utilizing Ghosh’s TiCl₄-promoted anti-aldol reaction [23], which plays a crucial role in establishing the stereogenic centers at C38 and C39 with high selectivity. Furthermore, the stereogenic center at C37 will be introduced through a stereoselective reduction of the corresponding ketone, ensuring precise control over the molecule’s three-dimensional architecture. This retrosynthetic plan strategically leverages well-established reactions to achieve efficient and selective bond formations, paving the way for a streamlined synthesis of the target molecule.

2. Results and Discussion

The synthesis began with the preparation of the linear pentapeptide compound 2, as depicted in Scheme 2. The process started with the coupling of N-Me-Gly-OMe·HCl (8) and Boc-N-Me-ᴅ-Phe-OH (9) using HATU(2-(7-Azabenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate)/HOAt(3H-[1,2,3]-Triazolo [4,5-b]pyridin-3-ol)/DIPEA(N,N-Diisopropylethylamine)/DMF(N,N-Dimethylformamide) as the reaction conditions. This step efficiently produced the dipeptide 10 in an excellent yield of 93%. Next, the dipeptide 10 underwent hydrolysis with LiOH, converting the ester into a carboxylic acid. The resulting acid was then subjected to peptide coupling with amine 11 under similar conditions, affording the tripeptide 12 in an overall yield of 68% over two steps. Subsequent treatment of 12 with TFA (Trifluoroacetic acid) removed the Boc protecting group, generating a free amine. This intermediate was then coupled with Boc- ʟ-Ala-OH (13), forming the tetrapeptide 14 with a moderate yield of 61% over two steps. Finally, Boc deprotection of 14 using TFA yielded the corresponding amine 15, which was coupled with α-hydroxy acid 16 under the same peptide coupling conditions. This step completed the synthesis of the pentapeptide 2 with an overall yield of 63% over the last two steps.
Upon successfully synthesizing pentapeptide 2, we shifted our focus to obtaining the polyketide fragment 3, as depicted in Scheme 3. Following established literature procedures [24], the anti-aldol product 17 was synthesized from butanal (6) under Ghosh’s TiCl4-promoted anti-aldol conditions [23]. This was followed by benzyl (Bn) protection using the Bn-TCAI (Benzyl 2,2,2-trichloroacetimidate) reagent and a catalytic amount of TfOH. Treatment of compound 17 with isopropyl magnesium chloride and N,O-dimethylhydroxylamine hydrochloride yielded the Weinreb amide in a moderate yield of 78%. Subsequent reaction with allyl magnesium bromide led to the formation of ketone 18. Stereoselective reduction of ketone 18 was crucial to obtaining the desired 1,3-syn hydroxyl substrate. Initially, we adopted conditions previously used in the total synthesis of des-thiomethyllooekeyolide A [25], employing methanol as the solvent and NaBH4 as the reducing agent at −30 °C. However, the stereoselectivity was inconsistent, ranging from 5:1 to 7:1 diastereomeric ratio (dr). Other conditions were tested, including the following: MeOH/NaBH4 at −60 °C and −78 °C, MeOH/NaBH4/CeCl3·7H2O at −60 °C, KBH4/THF at −78 °C, and LiAl(Ot-Bu)3H/THF at −78 °C. Despite these variations, the selectivity did not improve significantly. Ultimately, the best results were obtained using (R)-Me-CBS{(3aR)-1-Methyl-3,3-diphenyltetrahydro-1H,3H-pyrrolo[1,2-c][1,3,2]oxazaborole}/THF at −78 °C [26], achieving a remarkable selectivity of dr > 10:1 with an 89% yield. The resulting alcohol was treated with TBSOTf to afford product 20 in a high yield of 89%. Subsequent deprotection of the benzyl group at 50 °C using DDQ in a wet DCE solvent [27] yielded secondary alcohol 4 in a moderate yield of 69%. To confirm the relative stereochemistry at positions C37 and C39, the TBS protecting group in compound 4 was removed, followed by 1,3-diol acetonide protection to afford acetonide 21 in an excellent 93% yield. Analysis of the 13C NMR chemical shift of acetonide 21 confirmed the anticipated 1,3-syn configuration based on the distinct shifts of the ketal methyl groups (19.6 and 30.2 ppm for equatorial and axial methyl groups, respectively) [28] and the ketal carbon (97.8 ppm). Next, compound 4 was subjected to esterification using freshly prepared Fmoc-ʟ-(N-Me)Ala-Cl, yielding ester 22 with a 66% yield, without epimerization. An olefin cross-metathesis reaction between substrate 22 and methyl acrylate 23, catalyzed by Grubbs II in DCM at 50 °C (sealed tube), proceeded smoothly, affording the desired aldehyde in an 81% yield. Finally, Pinnick oxidation of the resulting aldehyde using NaClO2 successfully delivered the unsaturated carboxylic acid 3.
With pentapeptide 2 and carboxylic acid 3 in hand, we next focused on their esterification (Scheme 4). Despite multiple attempts using Yamaguchi esterification [29], Steglich esterification [30], Shiina esterification [31], and the Ghosez reagent [32], we were unable to obtain the desired product. We speculated that this failure was due to the relatively low reactivity of conjugate acid 3 compared to a saturated acid, as well as the inherent complexity of the flexible alcohol 2. To overcome this challenge, we shifted our focus to coupling alcohol 25 with acid 3. Under Yamaguchi conditions, this reaction successfully yielded the key intermediate 26 in an acceptable 68% yield. Subsequent deprotection of the allyl group from compound 26, followed by condensation with amine 15 under HATU conditions, afforded cyclization precursor 27 in a satisfactory 73% overall yield. Finally, after removing the Fm (9-Fluorenylmethyl) and Fmoc (Fluorenylmethoxycarbonyl) protecting groups using diethylamine, we investigated the macrocyclization reaction. Although HRMS confirmed the presence of the molecular ion peak corresponding to the target product, isolation of the cyclized compound proved challenging due to the low yield of this reaction.
To complete the total synthesis of lagunamide D, the macrocyclization site was reselected between the α-hydroxy acid and ʟ-Ala moiety (Scheme 5). To achieve this, the Fm and Fmoc protecting groups of compounds 14 and 26 were removed, yielding acid 29 and amine 30, respectively. These intermediates were then subjected to HATU/HOAt/DIPEA/DMF conditions, forming the cyclization precursor 31 with an overall yield of 44% over two steps. Notably, using DEPBT(3-(Diethoxyphosphoryloxy)-1,2,3- benzotriazin-4(3H)-one)/DIPEA/THF conditions [33,34] improved the yield to 53%. Subsequent deprotection of the allyl group using Pd(PPh3)4/NMA(N-methylaniline)/THF provided carboxylic acid 32. Treatment with TFA removed the Boc and TBS protecting groups. Finally, macrocyclization under HATU/HOAt/2,4,6-collidine/DMF conditions yielded compound 1 with an overall yield of 67% over three steps, completing the synthesis of lagunamide D. Acyl migration between lagunamides D and D′ has been reported in common HPLC solvents like methanol and acetonitrile, complicating purification. Fortunately, no such structural transformations were observed during our synthesis. In our synthetic procedure, DMF was utilized in the macrolactamization, while purification was carried out using an ethyl acetate/petroleum ether system, with the exclusion of methanol at every stage. This stability of lagunamide D during these processes may be attributed to the different conformations of the substrate in various solvents, as proposed by Kimura and Oishi in their investigations on the acyl migration of kulokekahilide-2 [35] and odoamide [36], respectively. The 1H and 13C NMR spectra of synthetic lagunamide D matched those of the natural product (see Figure S1 and Table S1 in the Supporting Information). Additionally, the optical rotation was measured at [ α ] D 20.0 = −57.1 (c 0.07, MeOH), which, while slightly higher than the reported value of [ α ] D 20.0 = −34.7 (c 0.05, MeOH) [10], confirmed the absolute stereochemistry of lagunamide D, as shown in Figure 1.

3. Materials and Methods

3.1. General Experiment

All reactions were conducted in flame-dried or oven-dried glassware under an atmosphere of dry nitrogen or argon. Oxygen- and/or moisture-sensitive solids and liquids were transferred appropriately. The concentration of solutions in vacuo was accomplished using a rotary evaporator fitted with a diaphragm vacuum pump. Residual solvents were removed under an oil vacuum pump (0.1–0.2 mm Hg). All reaction solvents were purified before use: Tetrahydrofuran (THF) was distilled from Na/benzophenone. Toluene was distilled over molten sodium metal. Dichloromethane (DCM), 1,2-dichloroethane (DCE), N,N-dimethylformamide (DMF), acetonitrile (MeCN), N,N-diisopropylethylamine (DIPEA), 2,4,6-collidine, and trimethylamine (Et3N) were distilled from CaH2. The reagents were purchased at the highest commercial quality and used without further purification unless otherwise stated. Flash column chromatography was performed using the indicated solvents on silica gel (100–200 mesh, Xinnuo, Yantai, China). Reactions were monitored using thin-layer chromatography (TLC), which was carried out using pre-coated sheets (Xinnuo silica gel coated with fluorescent indicator F254, 0.25 mm). Compounds were visualized with UV light, iodine, and ceric ammonium molybdate stainer phosphomolybdic acid in EtOH. The 1H NMR spectra were recorded on 500 MHz or 600 MHz spectrometers (Bruker Avance, Karlsruhe, Germany). Chemical shifts are reported in parts per million (ppm), relative to either a tetramethylsilane (TMS) internal standard or the signals of the deuterated solvent. The following abbreviations are used to describe the spin multiplicity: s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet, br = broad, dd = doublet of doublets, dt = doublet of triplets, dq = doublet of quartets, ddd = doublet of doublet of doublets; other combinations are derived from those listed above. Coupling constants (J) are reported in hertz (Hz) for the corresponding solutions, and chemical shifts are reported as parts per million (ppm) relative to residual CHCl3 δH (7.26 ppm). 13C-NMR nuclear magnetic resonance spectra were recorded at 126 MHz or 151 MHz for the corresponding solutions, and chemical shifts are reported as parts per million (ppm) relative to residual CDCl3 δC (77.16 ppm). All high-resolution mass spectra (HRMS) were obtained by Thermo Scientific’s UltiMate 3000 Series liquid system (Germering, Bavaria, Germany) and Thermo Scientific’s Q-Exactive combined quadrupole Orbitrap mass spectrometer (Germering, Bavaria, Germany). Optical rotations were recorded on a Rudolph AutoPol-I polarimeter (Shanghai, China) at 589 nm with a 50 mm cell. Data are reported as follows: specific rotation (c (g/100 mL), solvent).

3.2. Synthesis of Dipeptide 10

To a solution of Boc-N-Me-ᴅ-Phe-OH (1.00 g, 3.6 mmol) and N-Me-Gly-OMe⸱HCl (0.65 g, 4.7 mmol) in anhydrous DMF (5.0 mL), HOAt (0.10 g, 0.72 mmol), DIPEA (3.1 mL, 17.9 mmol), and HATU (2.72 g, 7.2 mmol) were added at room temperature, and the mixture was stirred overnight. The reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (20.0 mL × 3). The combined organic layers were then washed with water and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE(petroleum ether)/EA(Ethyl acetate) = 2:1), yielding dipeptide 10 (1.20 g, 93%) as a colorless oil. [ α ] D 25.0 = +110.7 (c 0.7, MeOH); 1H NMR (500 MHz, CDCl3) exists as rotational conformers: δ 7.31–7.11 (m, 5H), 5.33 (dd, J = 8.4, 6.7 Hz, 0.33H), 5.21 (dd, J = 9.1, 6.0 Hz, 0.17H), 5.02 (dd, J = 9.6, 5.1 Hz, 0.33H), 4.85 (dd, J = 9.2, 5.3 Hz, 0.17H), 4.39–4.14 (m, 1H), 4.04–3.90 (m, 0.67H), 3.78 (d, J = 17.2 Hz, 0.33H), 3.72 (s, 1H), 3.71 (s, 1H), 3.68 (s, 0.5H), 3.67 (s, 0.5H), 3.14 (dd, J = 13.9, 6.7 Hz, 0.5H), 3.07 (dd, J = 22.3, 5.7 Hz, 0.5H), 3.04–2.98 (m, 3H), 2.98–2.90 (m, 1H), 2.84 (s, 1H), 2.81 (s, 1H), 2.73 (s, 0.5H), 2.70 (s, 0.5H), 1.31 (s, 3H), 1.25 (s, 1.5H), 1.17 (s, 3H), 1.12 (s, 1.5H); 13C NMR (126 MHz, CDCl3) exists as rotational conformers: δ 170.9, 170.6, 170.5, 170.1, 169.5, 169.5, 169.4, 169.1, 155.2, 155.2, 154.3, 153.9, 138.1, 138.0, 137.6, 137.5, 129.5, 129.5, 129.5, 128.4, 128.4, 128.2, 126.4, 126.3, 80.4, 80.1, 80.1, 80.0, 58.1, 57.9, 55.8, 55.6, 52.3, 52.2, 52.1, 52.1, 50.7, 50.5, 50.0, 49.9, 36.0, 35.8, 35.1, 35.1, 29.6, 28.9, 28.9, 28.2, 28.1, 27.9, 27.7; HRMS (ESI-TOF) m/z: C19H28N2NaO5+ [M + Na]+: calcd: 387.1890; found: 387.1896.

3.3. Synthesis of Tripeptide 12

Dipeptide 10 (2.97 g, 8.2 mmol) was dissolved in a mixture of THF-MeOH-H2O (10.0 mL/10.0 mL/5.0 mL), and LiOH (1 M in H2O, 16.5 mL, 16.5 mmol) was added at room temperature. The mixture was stirred for 2 h and then acidified to pH = 5 with 1 M HCl (aq.). The aqueous phase was extracted with ethyl acetate (30.0 mL × 3), and the combined organic phase was washed with brine, dried over anhydrous Na2SO4, filtered, and concentrated to yield the crude acid, which was not further purified. To a solution of the residue acid and amine 11 (3.62 g, 7.5 mmol) in anhydrous DMF (25.0 mL), HOAt (1.03 g, 7.5 mmol), DIPEA (9.2 mL, 52.7 mmol), and HATU (35.7 g, 15.1 mmol) were added at room temperature, and the mixture was stirred overnight. The reaction mixture was quenched with saturated NH4Cl (aq.) and extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were washed with saturated NH4Cl (aq.) and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 2:1), yielding tripeptide 12 (3.60 g, 68%) as a colorless oil. [ α ] D 20.0 = +35.8 (c 1.5, MeOH); 1H NMR (500 MHz, CDCl3) exists as rotational conformers: δ 7.85–7.74 (m, 2H), 7.66–7.55 (m, 2H), 7.46–7.38 (m, 2H), 7.38–7.31 (m, 2H), 7.30–7.14 (m, 5H), 6.82 (d, J = 8.1 Hz, 0.15H), 6.63 (d, J = 8.6 Hz, 0.3H), 6.56 (d, J = 8.6 Hz, 0.45H), 6.21 (d, J = 8.6 Hz, 0.1H), 5.37 (t, J = 7.6 Hz, 0.45H), 5.15 (t, J = 7.7 Hz, 0.15H), 5.06 (dd, J = 9.2, 5.4 Hz, 0.3H), 5.00 (dd, J = 10.4, 4.2 Hz, 0.1H), 4.64–4.51 (m, 3H), 4.28–4.17 (m, 1.5H), 4.09–3.95 (m, 0.8H), 3.95–3.80 (m, 0.3H), 3.75 (d, J = 15.3 Hz, 0.4H), 3.17 (dd, J = 14.0, 7.1 Hz, 0.45H), 3.12–3.06 (m, 0.45H), 3.07 (s, 1H), 3.06–3.02 (m, 1.55H), 3.02–2.93 (m, 1.55H), 2.89–2.81 (m, 3H), 1.88–1.75 (m, 1H), 1.42–1.32 (m, 1H), 1.35 (s, 3H), 1.31–1.26 (m, 1H), 1.25–1.13 (m, 1H), 1.20 (s, 3H), 1.11 (s, 1H), 1.03–0.91 (m, 1H), 0.88–0.75 (m, 6H); 13C NMR (126 MHz, CDCl3) exists as rotational conformers: δ 171.6, 171.5, 171.5, 171.2, 168.5, 168.3, 155.4, 154.3, 143.6, 143.4, 143.4, 141.4, 141.4, 137.9, 137.4, 129.5, 129.4, 128.5, 128.3, 128.3, 127.9, 127.2, 126.5, 126.5, 124.9, 124.8, 120.1, 80.3, 80.1, 66.7, 66.6, 57.8, 56.5, 56.5, 55.6, 53.5, 52.7, 52.5, 46.8, 37.6, 37.5, 36.4, 36.1, 35.3, 29.7, 29.1, 28.2, 28.1, 28.0, 27.7, 24.9, 24.9, 24.8, 15.3, 15.3, 11.6; HRMS (ESI-TOF) m/z: C38H48N3O6+ [M + H]+: calcd: 642.3538; found: 642.3542.

3.4. Synthesis of Tetrapeptide 14

To a solution of tripeptide 12 (3.58 g, 5.6 mmol) in anhydrous CH2Cl2 (25.0 mL), TFA (5.0 mL) was added at room temperature. The mixture was stirred for 0.5 h and then concentrated under reduced pressure to yield the crude amine, which was not further purified. To a solution of the obtained amine and acid 13 in anhydrous DMF (25.0 mL), HOAt (0.68 g, 5.0 mmol), DIPEA (6.1 mL, 34.9 mmol), and HATU (3.79 g, 10.0 mmol) were added, and the mixture was stirred at room temperature overnight. The reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (50.0 mL × 3). The combined organic layers were then washed with saturated NH4Cl (aq.), water, and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 3:2), yielding tetrapeptide 14 (2.40 g, 61%) as a colorless oil. [ α ] D 25.0 = +7.7 (c 1.0, MeOH); 1H NMR (500 MHz, CDCl3) exists as rotational conformers: δ 7.85–7.75 (m, 2H), 7.65–7.58 (m, 2H), 7.45–7.38 (m, 2H), 7.33 (q, J = 7.8 Hz, 2H), 7.30–7.12 (m, 5H), 6.83 (d, J = 8.3 Hz, 0.3H), 6.64 (d, J = 8.7 Hz, 0.7H), 5.78 (dd, J = 9.2, 6.7 Hz, 0.7H), 5.62 (dd, J = 9.8, 6.2 Hz, 0.3H), 5.38 (d, J = 8.2 Hz, 0.7H), 5.30 (d, J = 7.8 Hz, 0.3H), 4.67–4.50 (m, 3H), 4.49–4.36 (m, 1H), 4.22 (t, J = 6.1 Hz, 1H), 4.17 (d, J = 17.0 Hz, 0.3H), 4.13 (d, J = 15.5 Hz, 0.7H), 3.87 (d, J = 15.5 Hz, 0.7H), 3.72 (d, J = 17.0 Hz, 0.3H), 3.23–3.14 (m, 1H), 3.14–3.06 (m, 1H), 3.04 (s, 3H), 3.00 (s, 3H), 1.90–1.77 (m, 1H), 1.44–1.34 (m, 9H), 1.22–1.13 (m, 1H), 1.04–0.95 (m, 1H), 0.88 (d, J = 6.8 Hz, 3H), 0.85–0.75 (m, 6H); 13C NMR (126 MHz, CDCl3) exists as rotational conformers: δ 173.9, 173.3, 171.7, 171.5, 171.1, 170.2, 168.2, 155.3, 143.5, 143.3, 141.4, 141.3, 136.4, 129.3, 129.2, 128.4, 127.9, 127.9, 127.2, 127.2, 126.8, 124.9, 124.8, 120.1, 79.6, 79.5, 66.7, 66.7, 56.7, 56.4, 53.9, 53.4, 52.5, 52.4, 46.8, 46.8, 46.6, 37.6, 37.6, 36.6, 35.5, 35.4, 35.2, 30.4, 29.7, 28.3, 28.3, 25.0, 24.8, 17.7, 17.5, 15.3, 15.3, 11.7, 11.6; HRMS (ESI-TOF) m/z: C41H52N4NaO7+ [M + Na]+: calcd: 735.3728; found: 735.3726.

3.5. Synthesis of Pentapeptide 2

To a solution of tripeptide 14 (2.45 g, 3.4 mmol) in anhydrous CH2Cl2 (15.0 mL), TFA (5.0 mL) was added at room temperature. The mixture was stirred for 30 min and then concentrated under reduced pressure to yield the crude amine, which was not further purified. To a solution of the obtained amine and compound 16 in anhydrous DMF (15.0 mL), HOAt (0.46 g, 3.4 mmol), DIPEA (4.1 mL, 23.7 mmol), and HATU (2.57 g, 6.8 mmol) were added, and the mixture was stirred at room temperature overnight. The reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (50.0 mL × 3). The combined organic layers were then washed with saturated NH4Cl (aq.), water, and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 1:5), yielding tetrapeptide 2 (1.58 g, 63%) as a colorless oil. [ α ] D 25.0 = +12.9 (c 0.9, MeOH); 1H NMR (500 MHz, CDCl3) exists as rotational conformers: δ 7.86–7.72 (m, 2H), 7.65–7.54 (m, 2H), 7.47–7.38 (m, 2H), 7.37–7.30 (m, 2H), 7.30–7.05 (m, 6H), 6.87 (d, J = 8.5 Hz, 0.3H), 6.63 (d, J = 8.7 Hz, 0.7H), 5.74 (t, J = 7.9 Hz, 0.7H), 5.61 (t, J = 8.0 Hz, 0.3H), 4.82 (q, J = 7.0 Hz, 0.7H), 4.72 (t, J = 7.0 Hz, 0.3H), 4.65–4.48 (m, 3H), 4.22 (t, J = 6.2 Hz, 1H), 4.20–4.09 (m, 1H), 4.09–4.02 (m, 1H), 3.88–3.76 (m, 1H), 3.23–3.13 (m, 1.3H), 3.12–3.02 (m, 4H), 3.01–2.92 (m, 3.7H), 1.91–1.74 (m, 2H), 1.53–1.42 (m, 1H), 1.35–1.24 (m, 1H), 1.24–1.13 (m, 1H), 1.09–0.96 (m, 1H), 0.96–0.88 (m, 6H), 0.88–0.71 (m, 9H); 13C NMR (126 MHz, CDCl3) δ exists as rotational conformers: 173.2, 173.1, 172.8, 171.8, 171.7, 170.9, 170.2, 168.1, 168.0, 143.5, 143.3, 141.4, 141.3, 136.3, 129.3, 129.1, 128.5, 127.9, 127.9, 127.2, 127.2, 126.9, 124.9, 124.8, 120.1, 73.9, 73.9, 66.8, 56.7, 56.4, 54.0, 53.4, 52.5, 52.3, 46.7, 45.5, 45.2, 38.6, 37.8, 37.6, 36.5, 35.4, 35.1, 30.6, 30.5, 29.7, 26.2, 25.0, 24.9, 17.6, 17.4, 15.3, 12.7, 12.6, 11.9, 11.7, 11.6; HRMS (ESI-TOF) m/z: C42H54N4NaO7+ ccc+: calcd: 749.3885; found: 749.3895.

3.6. Synthesis of Ketone 18

To a stirred solution of compound 17 (2.32 g, 4.4 mmol) and N,O-dimethylhydroxylamine hydrochloride (3.03 g, 31.1 mmol) in anhydrous THF (15.0 mL), i-PrMgCl (26.6 mL, 53.3 mmol) was added dropwise at −30 °C. After stirring for 1 h, the reaction mixture was warmed to −20 °C. After stirring for 1 h, the reaction mixture was warmed to 0 °C. After stirring for an additional hour, the reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (50.0 mL × 3). The combined organic layers were then washed with saturated NH4Cl (aq.) and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 4:1), yielding Weinreb amide S1 (0.95 g, 78%) as a colorless oil. [ α ] D 25.0 = −8.0 (c 1.0, MeOH); 1H NMR (500 MHz, CDCl3) δ 7.43–7.25 (m, 5H), 4.54 (s, 2H), 3.75 (ddd, J = 8.7, 6.8, 3.1 Hz, 1H), 3.65 (s, 3H), 3.29–3.17 (m, 1H), 3.22 (s, 3H), 1.69–1.58 (m, 1H), 1.58–1.40 (m, 3H), 1.10 (d, J = 6.9 Hz, 3H), 0.95 (t, J = 7.1 Hz, 3H); 13C NMR (126 MHz, CDCl3) δ 176.4, 139.0, 128.2, 127.8, 127.3, 81.0, 72.8, 61.4, 39.1, 33.5, 32.0, 18.0, 14.4, 13.5; HRMS (ESI-TOF) m/z: C16H25NNaO3+ [M + Na]+: calcd: 302.1727; found: 302.1737.
To a stirred solution of compound S1 (1.50 g, 5.4 mmol) in anhydrous THF (20.0 mL), allylmagnesium bromide (13.6 mL, 13.6 mmol, 1.0 M in THF) was added at 0 °C, and the mixture was stirred for 0.5 h at room temperature. The reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were then washed with saturated NH4Cl (aq.) and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 30:1), yielding ketone 18 (1.23 g, 86%) as a colorless oil. [ α ] D 25.0 = −57.8 (c 0.9, MeOH); 1H NMR (500 MHz, CDCl3) δ 7.40–7.27 (m, 5H), 5.95 (ddt, J = 17.1, 10.2, 6.9 Hz, 1H), 5.19 (dd, J = 10.2, 1.5 Hz, 1H), 5.10 (dd, J = 17.2, 1.6 Hz, 1H), 4.52 (d, J = 11.1 Hz, 1H), 4.43 (d, J = 11.0 Hz, 1H), 3.71 (ddd, J = 8.2, 6.0, 3.6 Hz, 1H), 3.28 (dd, J = 6.9, 1.7 Hz, 2H), 2.93 (dq, J = 8.3, 7.0 Hz, 1H), 1.58–1.39 (m, 4H), 1.05 (d, J = 7.0 Hz, 3H), 0.95 (t, J = 7.0 Hz, 3H); 13C NMR (126 MHz, CDCl3) δ 211.8, 138.4, 130.7, 128.3, 127.9, 127.6, 118.6, 81.0, 72.3, 49.0, 48.3, 33.1, 17.7, 14.3, 12.6; HRMS (ESI-TOF) m/z: C17H24NaO2+ [M + Na]+: calcd: 283.1669; found: 283.1677.

3.7. Synthesis of Compound 20

To a solution of ketone 18 (0.40 g, 1.5 mmol) in anhydrous THF (20.0 mL), (R)-Me-CBS (2.3 mL, 2.3 mmol, 1.0 M in THF) was added under an argon atmosphere, and the mixture was stirred for 10 min at room temperature. After cooling the reaction mixture to −78 °C, BH3⸱Me2S (0.20 mL, 2.0 mmol, 10.0 M in THF) was added, and the mixture was stirred for 3 h. The reaction mixture was then warmed to −20 °C and stirred for 0.5 h. The reaction mixture was quenched with MeOH (0.10 mL) and saturated NH4Cl (aq.) (5.0 mL) at 0 °C, and the aqueous phase was extracted with ethyl acetate (20.0 mL × 3). The combined organic layers were then washed with saturated NH4Cl (aq.) and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 30:1), yielding alcohol S2 (0.40 g, 89%) as a colorless oil. [ α ] D 25.0 = +4.1 (c 1.0, MeOH); 1H NMR (500 MHz, CDCl3) δ 7.42–7.28 (m, 5H), 6.00–5.86 (m, 1H), 5.25–5.12 (m, 2H), 4.62–4.46 (m, 2H), 3.68–3.57 (m, 2H), 2.49–2.38 (m, 1H), 2.22–2.08 (m, 1H), 2.00–1.89 (m, 1H), 1.68–1.57 (m, 1H), 1.57–1.49 (m, 2H), 1.48–1.40 (m, 1H), 0.95 (t, J = 7.2 Hz, 3H), 0.88 (d, J = 7.0 Hz, 3H); 13C NMR (126 MHz, CDCl3) δ 138.5, 135.2, 128.4, 127.9, 127.6, 117.8, 82.2, 73.17, 7.35, 4.55, 39.2, 32.3 18.0, 14.4, 11.9; HRMS (ESI-TOF) m/z: C17H26NaO2+ [M + Na]+: calcd: 285.1825; found: 285.1832.
To a solution of alcohol S2 (2.22 g, 8.5 mmol) in anhydrous CH2Cl2 (20.0 mL), Et3N (4.7 mL, 33.8 mmol) and TBSOTf (3.9 mL, 16.9 mmol) were added at room temperature under an argon atmosphere, and the mixture was stirred for 1 h. The reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were then washed with saturated NH4Cl (aq.) and brine, dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 30:1), yielding compound 20 (2.80 g, 89%) as a colorless oil. [ α ] D 25.0 = +4.5 (c 0.9, MeOH); 1H NMR (500 MHz, CDCl3) δ 7.45–7.24 (m, 5H), 5.95–5.83 (m, 1H), 5.11–5.01 (m, 2H), 4.56–4.44 (m, 2H), 3.82 (td, J = 6.1, 4.5 Hz, 1H), 3.53 (ddd, J = 8.6, 5.7, 3.2 Hz, 1H), 2.39–2.26 (m, 1H), 2.26–2.18 (m, 1H), 2.11–1.99 (m, 1H), 1.63–1.54 (m, 1H), 1.54–1.42 (m, 2H), 1.42–1.28 (m, 1H), 0.94 (t, J = 6.9 Hz, 3H), 0.92 (s, 9H), 0.86 (d, J = 7.0 Hz, 3H), 0.08 (s, 3H), 0.05 (s, 3H); 13C NMR (126 MHz, CDCl3) δ 139.2, 135.4, 128.3, 127.8, 127.3, 116.7, 79.8, 72.8, 71.0, 40.2, 38.1, 32.3, 25.9, 18.9, 18.1, 14.5, 10.1, −4.0, −4.7; HRMS (ESI-TOF) m/z: C23H40NaO2Si+ [M + Na]+: calcd: 399.2690; found: 399.2699.

3.8. Synthesis of Alcohol 4

To a solution of compound 20 (1.62 g, 4.3 mmol) in wet DCE (25.0 mL, analytically pure), 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (3.89 g, 17.2 mmol) was added at 50 °C, and the mixture was stirred for 1 h. The reaction mixture was cooled to room temperature and quenched with saturated Na2S2O3 (aq.) (20.0 mL), after which the aqueous phase was extracted with DCM (50.0 mL × 3). The combined organic layers were washed with 1 M NaOH (aq.)-saturated Na2S2O3 (aq.) (VNaOH: VNa2S2O3 = 1:1) and brine, dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 20:1), yielding alcohol 4 (0.85 g, 69%) as a colorless oil. [ α ] D 25.0 = +3.3 (c 1.2, MeOH); 1H NMR (500 MHz, CDCl3) δ 5.94–5.82 (m, 1H), 5.18–4.99 (m, 2H), 3.80 (q, J = 5.4 Hz, 1H), 3.61–3.54 (m, 1H), 2.74 (s, 1H), 2.41–2.33 (m, 1H), 2.32–2.23 (m, 1H), 1.76–1.68 (m, 1H), 1.58–1.49 (m, 2H), 1.43–1.33 (m, 2H), 0.95 (t, J = 6.6 Hz, 3H), 0.93 (s, 9H), 0.84 (d, J = 7.0 Hz, 3H), 0.11 (s, 6H); 13C NMR (126 MHz, CDCl3) δ 135.0, 117.1, 75.9, 73.8, 43.1, 39.3, 36.5, 25.9, 18.6, 18.0, 14.2, 12.8, −4.2, −4.7; HRMS (ESI-TOF) m/z: C16H34NaO2Si+ [M + Na]+: calcd: 309.2220; found: 309.2226.

3.9. Synthesis of Acetonide 21

To a solution of compound 4 (53.0 mg, 0.18 mmol) in anhydrous THF (3.0 mL), TBAF (0.4 mL, 0.4 mmol) was added at room temperature under an argon atmosphere, and the mixture was stirred for 30 min. The reaction mixture was concentrated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 1:1), yielding diol S4 as a colorless oil.
To a solution of the diol S4 obtained above in anhydrous CH2Cl2 (1.0 mL), 2,2-dimethoxypropane (3.0 mL, 25.1 mmol) and PTSA (2.0 mg, 11.6 mmol) were added at room temperature under an argon atmosphere, and the mixture was stirred for 5 min. The reaction mixture was quenched with saturated Et3N (0.5 mL, 3.6 mmol), and the solvent was concentrated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 50:1), yielding acetonide 21 (36.7 mg, 93%) as a colorless oil. [ α ] D 20.0 = +14.7 (c 0.8, MeOH); 1H NMR (500 MHz, CDCl3) δ 5.93 (ddt, J = 17.2, 10.3, 6.8 Hz, 1H), 5.11–5.02 (m, 2H), 3.54 (ddd, J = 10.2, 7.0, 3.1 Hz, 1H), 3.46 (ddd, J = 10.3, 8.0, 2.4 Hz, 1H), 2.39 (dddd, J = 12.8, 6.5, 3.2, 1.6 Hz, 1H), 2.20 (dt, J = 14.6, 7.1 Hz, 1H), 1.60–1.48 (m, 2H), 1.43 (s, 3H), 1.39 (s, 3H), 1.37–1.29 (m, 3H), 0.91 (t, J = 7.0 Hz, 3H), 0.79 (d, J = 6.6 Hz, 3H); 13C NMR (126 MHz, CDCl3) δ 135.2, 116.2, 97.8, 74.1, 73.7, 37.7, 37.5, 35.2, 30.2, 19.6, 18.2, 14.0, 12.2.

3.10. Synthesis of Ester 22

To a solution of Fmoc-N-Me-ʟ-Ala-OH (3.17 g, 9.8 mmol) in anhydrous CH2Cl2 (15.0 mL) at 0 °C, oxalyl chloride (2.8 mL, 32.5 mmol) and catalytic DMF (32 μL, 0.41 mmol) were added, and the mixture was warmed to room temperature. The reaction mixture was stirred for 1 h and then concentrated under reduced pressure to yield the crude acyl chloride, which was used directly in the subsequent step. To a solution of alcohol 4 (932 mg, 3.3 mmol) and DMAP (0.99 g, 8.1 mmol) in anhydrous CH2Cl2 (15.0 mL), Et3N (4.5 mL, 32.5 mmol) was added at room temperature under an argon atmosphere. The reaction mixture was cooled to 0 °C, and a solution of the crude acyl chloride obtained above in anhydrous CH2Cl2 (15.0 mL) was added. The mixture was then warmed to room temperature and stirred for 1 h. The reaction was quenched with methanol (1.0 mL) and saturated NH4Cl (aq.) (5.0 mL), and the aqueous phase was extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were washed with 1 M HCl (aq.), saturated NH4Cl (aq.), and brine and then dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 20:1), yielding ester 22 (1.26 g, 66%) as a colorless oil. [ α ] D 20.0 = −6.0 (c 0.7, MeOH); 1H NMR (500 MHz, CDCl3) exists as rotational conformers: δ 7.85–7.77 (m, 2H), 7.70–7.57 (m, 2H), 7.46–7.37 (m, 2H), 7.37–7.30 (m, 2H), 5.91–5.78 (m, 1H), 5.20–4.97 (m, 3H), 4.97–4.91 (m, 0.7H), 4.85–4.79 (m, 0.3H), 4.49–4.35 (m, 2H), 4.33–4.23 (m, 1H), 3.72–3.63 (m, 1H), 2.97–2.91 (m, 3H), 2.34–2.24 (m, 1H), 2.22–2.13 (m, 1H), 1.99–1.90 (m, 1H), 1.64–1.48 (m, 2H), 1.45 (d, J = 7.3 Hz, 3H), 1.40–1.20 (m, 2H), 1.00–0.82 (m, 15H), 0.12–0.01 (m, 6H); 13C NMR (126 MHz, CDCl3) exists as rotational conformers: δ 171.5, 171.3, 156.5, 155.9, 144.1, 144.9, 141.3, 135.4, 135.0, 127.7, 127.1, 125.1, 125.1, 120.0, 119.8, 116.9, 76.1, 76.0, 72.9, 67.9, 67.8, 54.2, 47.3, 41.6, 41.5, 37.9, 37.7, 32.8, 32.5, 30.4, 30.2, 25.9, 18.8, 18.7, 18.1, 15.4, 14.9, 14.1, 10.4, −4.1, −4.7; HRMS (ESI-TOF) m/z: C35H51NNaO5Si+ [M + Na]+: calcd: 616.3429; found: 616.3436.

3.11. Synthesis of Ester 26

In a sealed tube, α-methylacrolein (11.1 mL, 3.5 mmol) and Grubbs II catalyst (8.9 mg, 10.0 μmol) were added to a solution of ester 22 (1.22 g, 2.1 mmol) in anhydrous CH2Cl2 (10.0 mL) at room temperature. After purging with nitrogen gas for 30 min, the reaction mixture was warmed to 50 °C and stirred overnight. The mixture was then concentrated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 10:1), yielding aldehyde S3 (1.06 g, 81%) as a colorless oil. [ α ] D 25.0 = −21.3 (c 0.8, MeOH); 1H NMR (500 MHz, CDCl3) exists as rotational conformers: δ 9.38 (s, 0.73H), 9.35 (s, 0.27H), 7.87–7.74 (m, 2H), 7.68–7.55 (m, 2H), 7.52–7.41 (m, 2H), 7.41–7.30 (m, 2H), 6.67–6.48 (m, 1H), 5.14–5.00 (m, 1H), 4.94–4.81 (m, 1H), 4.52–4.33 (m, 2H), 4.33–4.20 (m, 1H), 3.95–3.79 (m, 1H), 2.96 (s, 2.2H), 2.92 (s, 0.8H), 2.59–2.42 (m, 2H), 2.02–1.93 (m, 1H), 1.74 (s, 3H), 1.65–1.51 (m, 2H), 1.49–1.42 (m, 3H), 1.41–1.22 (m, 2H), 0.99–0.84 (m, 15H), 0.13–−0.02 (m, 6H); 13C NMR (126 MHz, CDCl3) δ exists as rotational conformers: 195.3, 195.0, 171.9, 156.5, 152.0, 151.0, 144.0, 143.9, 141.3, 140.3, 127.7, 127.1, 127.1, 125.0, 120.0, 120.0, 76.0, 75.8, 71.6, 71.4, 68.0, 67.8, 54.2, 47.2, 42.6, 42.3, 33.4, 32.2, 30.2, 25.8, 18.6, 18.5, 18.0, 15.3, 14.9, 14.2, 14.1, 10.3, 10.2, 9.4. −4.4, −4.7; HRMS (ESI-TOF) m/z: C37H53NNaO6Si+ [M + Na]+: calcd: 658.3534; found: 658.3541.
To a stirred solution of aldehyde S3 (1.05 g, 1.7 mmol) and 2-methyl-2-butene (16 mL) in t-BuOH/pH = 7 phosphate buffer (2:1, 24.0 mL), NaClO2 (4.33 g, 49.5 mmol) and NaH2PO4 (9.53 g, 61.1 mmol) were added at room temperature, and the mixture was stirred for 1 h. The reaction mixture was acidified to pH = 3 with 1 M HCl (aq.), and the aqueous phase was then extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were washed with saturated NH4Cl (aq.) and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 1:1), yielding acid 3 (1.05 g, 98%) as a colorless oil.
To a solution of acid 3 (353 mg, 0.58 mmol), alcohol 25 (300 mg, 1.70 mmol), and DMAP (0.35 g, 2.90 mmol) in anhydrous PhMe (10.0 mL) at −20 °C, 2,4,6-trichlorobenzoyl chloride (0.30 mL, 1.70 mmol) was added, and the mixture was stirred for 0.5 h. The reaction mixture was then warmed to room temperature and stirred overnight. The mixture was acidified to pH = 3 with 1 M HCl (aq.), and the organic phase was extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were washed with 1 M HCl (aq.), saturated NaHCO3 (aq.), and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 1:3), yielding ester 26 (318 mg, 68%) as a colorless oil. [ α ] D 25.0 = −25.0 (c 0.8, MeOH); 1H NMR (600 MHz, CDCl3) exists as rotational conformers: δ 7.84–7.76 (m, 2H), 7.72–7.56 (m, 2H), 7.48–7.39 (m, 2H), 7.39–7.31 (m, 2H), 7.00–6.88 (m, 1H), 5.91 (ddt, J = 16.5, 10.9, 5.6 Hz, 1H), 5.33 (d, J = 17.4 Hz, 1H), 5.24 (d, J = 10.3 Hz, 1H), 5.08 (d, J = 3.5 Hz, 1H), 5.07–5.03 (m, 1H), 4.95–4.86 (m, 0.66H), 4.83–4.79 (m, 0.34H), 4.75–4.60 (m, 2H), 4.49–4.36 (m, 2H), 4.32–4.23 (m, 1H), 3.86–3.79 (m, 1H), 2.93 (s, 2H), 2.91 (s, 1H), 2.42–2.30 (m, 2H), 2.10–2.00 (m, 1H), 2.00–1.91 (m, 1H), 1.88 (s, 2.5H), 1.85 (s, 0.5H), 1.63–1.51 (m, 3H), 1.51–1.39 (m, 4H), 1.37–1.23 (m, 2H), 0.99 (d, J = 6.9 Hz, 3H), 0.98–0.81 (m, 18H), 0.10–0.00 (m, 6H);13C NMR (151 MHz, CDCl3) exists as rotational conformers: δ 171.6, 171.2, 169.9, 167.4, 156.4, 155.8, 144.1, 143.9, 141.3, 141.3, 140.6, 140.2, 131.8, 127.7, 127.1, 125.1, 125.1, 120.0, 118.5, 76.2, 76.0, 74.8, 71.7, 71.6, 67.9, 67.8, 65.5, 54.3, 54.1, 47.2, 42.5, 42.4, 36.8, 33.4, 33.1, 32.4, 32.3, 30.2, 29.7, 26.1, 25.8, 18.5, 17.9, 15.3, 14.9, 14.5, 14.1, 12.7, 11.7, 10.4. −4.3, −4.7; HRMS (ESI-TOF) m/z: C46H67NNaO9Si+ [M + Na]+: calcd: 828.4477; found: 828.4487.

3.12. Synthesis of Compound 27

To a solution of compound 26 (0.14 g, 0.17 mmol) and Pd(PPh3)4 (19.6 mg, 17 μmol) in anhydrous THF (2.0 mL), PhNHMe (37.7 μL, 0.34 mmol) was added. The resulting mixture was stirred at room temperature for 1 h. The reaction was quenched with TFA (75.6 μL, 1.02 mmol), diluted with ethyl acetate (30.0 mL), and washed sequentially with 1 M HCl (aq.) (3.0 mL × 2). The organic phase was washed with brine, dried over anhydrous Na2SO4, filtered, and concentrated to afford the crude acid, which was used in the next step without further purification. The crude acid was dissolved in anhydrous DMF (5.0 mL); HOAt (22.74 mg, 0.17 mmol), DIPEA (0.29 mL, 1.7 mmol), amine 15 (0.11 g, 0.15 mmol), and HATU (0.12 g, 0.34 mmol) were added at room temperature; and the mixture was stirred overnight. The reaction mixture was quenched with saturated NH4Cl (aq.), and the aqueous phase was extracted with ethyl acetate (20.0 mL × 3). The combined organic layers were then washed with water and brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 1:1), yielding compound 27 (0.17 g, 73%) as a colorless oil. [ α ] D 20.0 = −12.9 (c 0.6, MeOH); 1H NMR (600 MHz, Chloroform-d) exists as rotational conformers: δ 7.83–7.74 (m, 4H), 7.66–7.53 (m, 4H), 7.49–7.38 (m, 4H), 7.37–7.30 (m, 4H), 7.27–7.15 (m, 5H), 6.95–6.89 (m, 1H), 6.65 (d, J = 7.4 Hz, 1H), 6.52 (d, J = 8.6 Hz, 1H), 5.84 (dd, J = 9.5, 6.5 Hz, 0.7H), 5.76 (t, J = 8.2 Hz, 0.3H), 5.23–5.18 (m, 1H), 5.07–4.98 (m, 1H), 4.93–4.87 (m, 1H), 4.75–4.68 (m, 1H), 4.59–4.51 (m, 3H), 4.45–4.37 (m, 2H), 4.30–4.20 (m, 2H), 4.06–3.94 (m, 2H), 3.90–3.82 (m, 1H), 3.22–3.12 (m, 2H), 3.12–2.89 (m, 9H), 2.83 (s, 1H), 2.39–2.33 (m, 2H), 2.00–1.93 (m, 2H), 1.90–1.87 (m, 3H), 1.85–1.78 (m, 1H), 1.61–1.52 (m, 2H), 1.48–1.21 (m, 7H), 1.21–0.55 (m, 31H), 0.11–−0.02 (m, 6H); 13C NMR (151 MHz, CDCl3) exists as rotational conformers: 172.4, 171.7, 171.6, 170.8, 170.8, 169.5, 168.1, 166.7, 156.4, 144.1, 143.9, 143.6, 143.4, 141.4, 141.3, 136.5, 129.3, 128.3, 127.9, 127.9, 127.7, 127.2, 127.1, 124.8, 120.1, 76.1, 76.1, 75.9, 71.7, 67.8, 66.7, 56.6, 56.4, 56.3, 54.3, 54.1, 53.8, 53.7, 52.7, 52.2, 47.2, 46.8, 45.0, 42.6, 38.6, 37.8, 37.7, 37.6, 37.5, 36.7, 36.5, 35.2, 35.1, 33.4, 32.5, 31.9, 30.6, 30.4, 30.2, 29.7, 29.7, 29.4, 26.1, 25.8, 24.9, 18.5, 18.0, 17.3, 17.2, 15.3, 14.9, 14.1, 14.1, 13.9, 12.8, 11.7, 11.6, 11.5, 10.4, −4.2, −4.7. HRMS (ESI-TOF) m/z: C79H105N5NaO13Si+ [M + Na]+: calcd: 1382.7370; found: 1382.7390.

3.13. Synthesis of Compound 31

To a solution of compound 14 (28 mg, 36 μmol) in anhydrous CH3CN (2.0 mL), diethylamine (Et2NH) (1.0 mL) was added, and the mixture was stirred for 2 h at room temperature. The reaction mixture was then concentrated under reduced pressure, and the residue was dissolved in ethyl acetate (50.0 mL) and washed with 1 M HCl (aq.) (3.0 mL × 2) and brine. The organic phase was then dried over anhydrous Na2SO4, filtered, and concentrated to afford crude 29, which was used in the next step without further purification. To a solution of compound 26 (16 mg, 20 μmol) in anhydrous CH3CN (2.0 mL), diethylamine (Et2NH) (1.0 mL) was added, and the mixture was stirred for 2 h at room temperature. The mixture was then concentrated under reduced pressure to afford crude 30, which was used in the next step without further purification. The above crude acid 29 and amine 30 were dissolved in anhydrous THF (3.0 mL), and DEPBT (13 mg, 45 μmol) and DIPEA (7.8 μL, 45 μmol) were added successively at room temperature. The mixture was then stirred overnight. The reaction mixture was quenched with saturated NH4Cl (5.0 mL), and the organic phase was extracted with ethyl acetate (30.0 mL × 3). The combined organic layers were washed with brine, dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 2:3), yielding compound 31 (11.5 mg, 53%) as a colorless oil. [ α ] D 20.0 = −16.4 (c 0.5, MeOH); 1H NMR (600 MHz, CDCl3) exists as rotational conformers: δ 7.39–7.13 (m, 5H), 7.13–7.03 (m, 1H), 7.02–6.91 (m, 1H), 6.81–6.66 (m, 1H), 5.98–5.87 (m, 1H), 5.78–5.68 (m, 1H), 5.67–5.59 (m, 1H), 5.38–5.30 (m, 1H), 5.30–5.22 (m, 1H), 5.13–5.07 (m, 1H), 5.07–4.96 (m, 1H), 4.96–4.82 (m, 1H), 4.71–4.61 (m, 2H), 4.59–4.36 (m, 2H), 4.34–4.26 (m, 1H), 3.94–3.84 (m, 1H), 3.84–3.72 (m, 1H), 3.32–3.11 (m, 2H), 3.11–2.80 (m, 8H), 2.42–2.27 (m, 2H), 2.10–2.01 (m, 1H), 1.97–1.80 (m, 4H), 1.79–1.38 (m, 18H), 1.38–1.06 (m, 15H), 1.04–0.82 (m, 18H), 0.09–−0.02 (m, 6H); 13C NMR (151 MHz, CDCl3) exists as rotational conformers: δ 173.1, 172.0, 171.3, 170.9, 170.7, 169.8, 167.9, 167.5, 155.3, 140.8, 136.5, 131.8, 129.9, 129.4, 128.4, 128.3, 126.8, 118.6, 79.4, 76.1, 74.9, 71.8, 65.5, 54.2, 53.2, 52.2, 51.9, 46.6, 42.8, 37.6, 36.8, 36.4, 35.3, 33.4, 32.4, 31.9, 31.3, 30.4, 29.7, 29.7, 29.4, 28.3, 28.3, 26.1, 25.8, 24.0, 22.7, 18.7, 18.0, 17.7, 15.5, 14.5, 14.5, 14.1, 14.1, 12.6, 11.7, 11.2, 10.4, −4.3, −4.7, −4.7; HRMS (ESI-TOF) m/z: C58H97N5NaO13Si+ [M + Na]+: calcd: 1122.6744; found: 1122.6726.

3.14. Synthesis of Lagunamide D (1)

To a solution of compound 31 (26 mg, 24 μmol) and Pd(PPh3)4 (2.7 mg, 2.4 μmol) in anhydrous THF (2.0 mL), PhNHMe (5.2 μL, 48 μmol) was added. The resulting mixture was stirred at room temperature for 1 h. The reaction was quenched with TFA (10 μL, 144 μmol), diluted with ethyl acetate (30.0 mL), and washed sequentially with 1 M HCl (aq.) (3.0 mL × 2). The organic phase was washed with brine, dried over anhydrous Na2SO4, filtered, and concentrated to afford the crude acid 32, which was used in the next step without further purification. To a solution of the crude acid in anhydrous CH2Cl2 (2.5 mL), TFA (0.50 mL) was added, and the mixture was stirred at room temperature for 2 h. The mixture was concentrated under reduced pressure, the residue was dissolved in DMF (12.0 mL), and HOAt (16 mg, 0.12 mmol), 2,4,6-collidine (94 μL, 0.72 mmol), and HATU (90 mg, 0.24 mmol) were added successively. The mixture was stirred for 48 h and then concentrated under reduced pressure. The residue was dissolved in ethyl acetate and washed with 1 M HCl (aq.), water, and brine. The organic phase was then dried over anhydrous Na2SO4, filtered, and concentrated. The resulting residue was purified by flash chromatography on silica gel (PE/EA = 2:3 to pure EA), yielding lagunamide D (13 mg, 67%) as a colorless foam. [ α ] D 20.0 = −57.1 (c 0.07, MeOH); 1H NMR (600 MHz, DMSO-d6) exists as rotational conformers: δ 8.49 (d, J = 6.4 Hz, 0.3H), 8.34 (d, J = 8.3 Hz, 0.1H), 7.23–7.05 (m, 5.1H), 6.92–6.74 (m, 0.2H), 6.74–6.54 (m, 0.2H), 5.81–5.67 (m, 0.2H), 5.28 (dd, J = 10.2, 5.3 Hz, 0.6H), 5.23–4.99 (m, 0.6H), 4.92 (d, J = 7.6 Hz, 0.6H), 4.90–4.81 (m, 1.0H), 4.81–4.72 (m, 0.7H), 4.72–4.44 (m, 0.9H), 4.31 (dq, J = 6.3, 6.3 Hz, 0.6H), 4.25–4.07 (m, 0.8H), 3.98 (d, J = −18.4 Hz, 0.5H), 3.92 (q, J = 6.6 Hz, 0.6H), 3.87–3.72 (m, 0.3H), 3.72–3.38 (m, 0.7H), 3.21 (s, 2.4H), 3.16–3.06 (m, 0.6H), 3.06–2.88 (m, 1.9H), 2.85 (s, 2.7H), 2.80–2.76 (m, 0.8H), 2.73 (s, 2.2H), 2.64 (s, 1.2H), 2.45–2.18 (m, 1.2H), 2.10 (ddd, J = −14.0, 9.8, 9.8 Hz, 0.9H), 1.95–1.85 (m, 1.2H), 1.85–1.64 (m, 4.9H), 1.62–1.08 (m, 11.0H), 1.06–0.41 (m, 21.0H); 13C NMR (151 MHz, DMSO-d6) δ 172.45, 170.80, 170.14, 170.11, 169.52, 168.23, 168.01, 144.45, 137.17, 129.18, 127.48, 126.83, 125.84, 75.36, 74.62, 69.30, 58.07, 52.45, 51.1, 50.40, 44.65, 40.89, 37.29, 37.10, 36.27, 35.79, 34.42, 33.86, 29.60, 29.36, 25.83, 23.19, 17.05, 14.89, 14.69, 14.06, 13.92, 12.93, 11.98, 11.40, 10.27, 9.60; HRMS (ESI-TOF) m/z: C44H69N5NaO10+ [M + Na]+: calcd: 850.4937; found: 850.4909.

4. Conclusions

In summary, we have accomplished the total synthesis of lagunamide D and confirmed its absolute stereochemical configuration. Key features of the synthesis include Ghosh’s TiCl4-promoted anti-aldol reaction to establish the C38 and C39 chiral centers, a CBS reduction to construct the C37 chiral hydroxyl group, and a cross-metathesis reaction followed by a Pinnick oxidation to build the unsaturated carboxylic acid moiety. This synthetic strategy was completed in a 14-step longest linear sequence, starting from the known intermediate 17, with an overall yield of 4.6%, which demonstrated an efficient route for access to the structurally unique 26-membered cytotoxic cyclic depsipeptide.

Supplementary Materials

The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/md23030099/s1: Figure S1: Comparison of 1H NMR (600 MHz) for Natural and Synthetic Lagunamide D in DMSO-d6; Table S1: Comparison of 13C NMR (600 MHz) for Natural and Synthetic Lagunamide D in DMSO-d6.; NMR and spectra of compounds 1, 2, 4, 10, 12, 14, 18, 2022, 26, 27, 31 and S1S3.

Author Contributions

Conceptualization, J.L., J.-L.Y., T.Y. and J.-B.P.; investigation, J.-B.P., H.N., X.-E.L., J.H., H.X. and M.-J.C.; writing—original draft preparation, H.N., X.-E.L., J.H., H.X. and M.-J.C.; writing—review and editing, J.L., T.Y., J.-L.Y. and J.-B.P. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Department of Education of Guangdong Province (2021ZDJS097), the Technology and Innovation Bureau of Longgang District (RCTDPT-2019-008), the Guangdong Basic and Applied Basic Research Foundation (2022A1515110592, 2023A1515012715, and 2024A1515010958), the Natural Science Foundation of Guangdong Province (2021A1515010344), the National Natural Science Foundation of China (Grant no. 82473801), and the Jiangmen Basic and Applied Basic Research Project (202301003003140).

Institutional Review Board Statement

Not applicable.

Data Availability Statement

Data are contained within the article or Supplementary Materials.

Conflicts of Interest

Author Tao Ye was employed by the company Qian Yan (Shenzhen) Pharmatech. Ltd. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Figure 1. Structures of lagunamides A–D and D′.
Figure 1. Structures of lagunamides A–D and D′.
Marinedrugs 23 00099 g001
Scheme 1. Retrosynthetic analysis of lagunamide D (1).
Scheme 1. Retrosynthetic analysis of lagunamide D (1).
Marinedrugs 23 00099 sch001
Scheme 2. Synthesis of pentapeptide 2.
Scheme 2. Synthesis of pentapeptide 2.
Marinedrugs 23 00099 sch002
Scheme 3. Synthesis of carboxylic acid 3.
Scheme 3. Synthesis of carboxylic acid 3.
Marinedrugs 23 00099 sch003
Scheme 4. Initial attempts towards the total synthesis of lagunamide D (1).
Scheme 4. Initial attempts towards the total synthesis of lagunamide D (1).
Marinedrugs 23 00099 sch004
Scheme 5. Completion of the total synthesis of lagunamide D (1).
Scheme 5. Completion of the total synthesis of lagunamide D (1).
Marinedrugs 23 00099 sch005
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Nan, H.; Long, X.-E.; He, J.; Xing, H.; Cheng, M.-J.; Peng, J.-B.; Ye, T.; Yan, J.-L.; Liu, J. Total Synthesis of the Marine Cyclic Depsipeptide Lagunamide D. Mar. Drugs 2025, 23, 99. https://doi.org/10.3390/md23030099

AMA Style

Nan H, Long X-E, He J, Xing H, Cheng M-J, Peng J-B, Ye T, Yan J-L, Liu J. Total Synthesis of the Marine Cyclic Depsipeptide Lagunamide D. Marine Drugs. 2025; 23(3):99. https://doi.org/10.3390/md23030099

Chicago/Turabian Style

Nan, Huiru, Xiong-En Long, Jianfei He, Hailiang Xing, Min-Jing Cheng, Jin-Bao Peng, Tao Ye, Jia-Lei Yan, and Junyang Liu. 2025. "Total Synthesis of the Marine Cyclic Depsipeptide Lagunamide D" Marine Drugs 23, no. 3: 99. https://doi.org/10.3390/md23030099

APA Style

Nan, H., Long, X.-E., He, J., Xing, H., Cheng, M.-J., Peng, J.-B., Ye, T., Yan, J.-L., & Liu, J. (2025). Total Synthesis of the Marine Cyclic Depsipeptide Lagunamide D. Marine Drugs, 23(3), 99. https://doi.org/10.3390/md23030099

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