In Vitro Anti-Inflammatory Activity and Molecular Docking Analysis of Compounds Isolated from Beyeria viscosa
Abstract
1. Introduction
2. Materials and Methods
2.1. General Experimental Procedures
2.2. Plant Material
2.3. Extraction and Bioassay-Guided Isolation
2.4. X-Ray Crystallographic Analysis
2.5. Maintenance of RAW 264.7 Macrophages and N-11 Microglial Cells
2.6. Pro-Inflammatory Activation of Cells
2.7. Determination of Nitrite by the Griess Assay
2.8. Determination of TNF-α by ELISA
2.9. Determination of IL-6 by ELISA
2.10. Determination of Cell Viability by the Alamar Blue Assay
2.11. Molecular Docking Study
2.12. Statistical Analysis
3. Results and Discussion
3.1. Bioassay-Guided Isolation
3.2. Identification and Characterization
3.3. Anti-Inflammatory Activity
3.4. Molecular Docking Analysis
3.5. Structure–Activity Relationship (SAR)
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Mathew, S.; Zhou, X.; Münch, G.; Bodkin, F.; Wallis, M.; Li, F.; Raju, R. Tristaenone A: A new anti-inflammatory compound isolated from the Australian Indigenous plant Tristaniopsis laurina. Molecules 2022, 27, 6592. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Ghara, A.; Matada, G.S.P.; Sah, R.K.; Sneha, S.; Boneka, S.S.; Paik, A.; Majumder, S.; Pramanick, P.; Metikurki, B. Unravelling immunity: Understanding inflammatory pathways as key players in immune response and disease progression. Curr. Mol. Biol. Rep. 2025, 11, 5. [Google Scholar] [CrossRef] [Scilit]
- Facchin, B.M.; Dos Reis, G.O.; Vieira, G.N.; Mohr, E.T.B.; da Rosa, J.S.; Kretzer, I.F.; Demarchi, I.G.; Dalmarco, E.M. Inflammatory biomarkers on an LPS-induced RAW 264.7 cell model: A systematic review and meta-analysis. Inflamm. Res. 2022, 71, 741–758. [Google Scholar] [CrossRef] [Scilit]
- Kim, M.E.; Lee, J.S. Advances in the regulation of inflammatory mediators in nitric oxide synthase: Implications for disease modulation and therapeutic approaches. Int. J. Mol. Sci. 2025, 26, 1204. [Google Scholar] [CrossRef] [Scilit]
- Tai, F.W.D.; McAlindon, M.E. Non-steroidal anti-inflammatory drugs and the gastrointestinal tract. Clin. Med. 2021, 21, 131–134. [Google Scholar] [CrossRef] [Scilit]
- Leal-Ramos, O.J.; Arias-Ruiz, L.F.; Huerta-Velázquez, J.M.; Lamoreaux-Aguayo, J.P.; Butcher, D.; López-Cuellar, A.B.; Orozco-Jiménez, K.I.; Torres-Bugarín, O. Mechanisms Involved in the Adverse Cardiovascular Effects of Selective Cyclooxygenase-2 Inhibitors. Cardiovasc. Med. 2025, 28, 5. [Google Scholar] [CrossRef] [Scilit]
- Nakadate, K.; Ito, N.; Kawakami, K.; Yamazaki, N. Anti-Inflammatory Actions of Plant-Derived Compounds and Prevention of Chronic Diseases: From Molecular Mechanisms to Applications. Int. J. Mol. Sci. 2025, 26, 5206. [Google Scholar] [CrossRef] [Scilit]
- Sharman, M.J.; Verdile, G.; Kirubakaran, S.; Parenti, C.; Singh, A.; Watt, G.; Karl, T.; Chang, D.; Li, C.G.; Münch, G. Targeting inflammatory pathways in Alzheimer’s disease: A focus on natural products and phytomedicines. CNS Drugs 2019, 33, 457–480. [Google Scholar] [CrossRef] [Scilit]
- Jaye, K.; Dissanayake, I.H.; Bhuyan, D.J.; Chang, D. A Scoping Review of Chemical, Pharmacological and Toxicological Properties and Clinical Applications of Australian Indigenous Medicine. Biomed. Pharmacother. 2025, 191, 118503. [Google Scholar] [CrossRef] [Scilit]
- Turpin, G.; Ritmejerytė, E.; Jamie, J.; Crayn, D.; Wangchuk, P. Aboriginal medicinal plants of Queensland: Ethnopharmacological uses, species diversity, and biodiscovery pathways. J. Ethnobiol. Ethnomed. 2022, 18, 54. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Mathew, S.; Zhou, X.; Münch, G.; Raju, R. Exploring the Anti-Inflammatory Potential of Australian Native Plants Based on their Ethnopharmacological Knowledge. Chem. Biodivers. 2024, 21, e202400492. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Metherall, J.; Carroll, R.; Coles, S.; Hall, M.; Probert, M. Advanced crystallisation methods for small organic molecules. Chem. Soc. Rev. 2023, 52, 1995–2010. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Bernstein, J. Polymorphism in Molecular Crystals; Oxford University Press: Oxford, UK, 2020; Volume 30. [Google Scholar]
- Cowieson, N.P.; Aragao, D.; Clift, M.; Ericsson, D.J.; Gee, C.; Harrop, S.J.; Mudie, N.; Panjikar, S.; Price, J.R.; Riboldi-Tunnicliffe, A. MX1: A bending-magnet crystallography beamline serving both chemical and macromolecular crystallography communities at the Australian Synchrotron. J. Synchrotron Radiat. 2015, 22, 187–190. [Google Scholar] [CrossRef] [Scilit]
- Kabsch, W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. Appl. Crystallogr. 1993, 26, 795–800. [Google Scholar] [CrossRef] [Scilit]
- Sheldrick, G. SADABS, version 2014/5; Bruker AXS Inc.: Madison, WI, USA, 2014. [Google Scholar]
- Sheldrick, G.M. SHELXT–Integrated space-group and crystal-structure determination. Found. Crystallogr. 2015, 71, 3–8. [Google Scholar] [CrossRef] [Scilit]
- Sheldrick, G.M. Crystal structure refinement with SHELXL. Cryst. Struct. Commun. 2015, 71, 3–8. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Dolomanov, O.V.; Bourhis, L.J.; Gildea, R.J.; Howard, J.A.; Puschmann, H. OLEX2: A complete structure solution, refinement and analysis program. Appl. Crystallogr. 2009, 42, 339–341. [Google Scholar] [CrossRef] [Scilit]
- Sun, J.; Zhang, X.; Broderick, M.; Fein, H. Measurement of nitric oxide production in biological systems by using Griess reaction assay. Sensors 2003, 3, 276–284. [Google Scholar] [CrossRef] [Scilit]
- Gunawardena, D.; Karunaweera, N.; Lee, S.; van Der Kooy, F.; Harman, D.G.; Raju, R.; Bennett, L.; Gyengesi, E.; Sucher, N.J.; Münch, G. Anti-inflammatory activity of cinnamon (C. zeylanicum and C. cassia) extracts–identification of E-cinnamaldehyde and o-methoxy cinnamaldehyde as the most potent bioactive compounds. Food Funct. 2015, 6, 910–919. [Google Scholar] [CrossRef] [Scilit]
- Zhou, X.; Münch, G.; Wohlmuth, H.; Afzal, S.; Kao, M.-H.; Al-Khazaleh, A.; Low, M.; Leach, D.; Li, C.G. Synergistic Inhibition of Pro-Inflammatory Pathways by Ginger and Turmeric Extracts in RAW 264.7 Cells. Front. Pharmacol. 2022, 13, 818166. [Google Scholar] [CrossRef] [Scilit]
- Raju, R.; Kumar, P.; Reddell, P.; Cullen, J.; Harman, D.; Maccarone, A.T.; Kelso, C.; Muench, G. Insignoic acids A–E, unusual α, β-unsaturated keto fatty acids isolated from the exocarp of Australian rainforest tree Endiandra insignis (Lauraceae). Fitoterapia 2024, 173, 105815. [Google Scholar] [CrossRef] [Scilit]
- Heydari, H.; Acikara, O.B.; Tekin, M.; Iscan, G.S. Isolation and identification of flavonol glycosides from Lathyrus armenus (Boiss. & Huet). Iran. J. Pharm. Res. 2020, 19, 291. [Google Scholar]
- Yin, R.; Han, K.; Heller, W.; Albert, A.; Dobrev, P.I.; Zažímalová, E.; Schäffner, A.R. Kaempferol 3-O-rhamnoside-7-O-rhamnoside is an endogenous flavonol inhibitor of polar auxin transport in Arabidopsis shoots. New Phytol. 2014, 201, 466–475. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Kumar, K.; Sabu, V.; Sindhu, G.; Rauf, A.; Helen, A. Isolation, identification and characterization of apigenin from Justicia gendarussa and its anti-inflammatory activity. Int. Immunopharmacol. 2018, 59, 157–167. [Google Scholar] [CrossRef] [Scilit]
- Greenham, J.; Vassiliades, D.D.; Harborne, J.B.; Williams, C.A.; Eagles, J.; Grayer, R.J.; Veitch, N.C. A distinctive flavonoid chemistry for the anomalous genus Biebersteinia. Phytochemistry 2001, 56, 87–91. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hase, T.; Ohtani, K.; Kasai, R.; Yamasaki, K.; Picheansoonthon, C. Revised structure for hortensin, a flavonoid from Millingtonia hortensis. Phytochemistry 1995, 40, 287–290. [Google Scholar] [CrossRef] [Scilit]
- Osei-Safo, D.; Chama, M.; Addae-Mensah, I.; Waibel, R. Hispidulin and other constituents of Scoparia dulcis Linn. J. Sci. Technol. 2009, 29. [Google Scholar] [CrossRef] [Scilit]
- Su, B.-N.; Park, E.J.; Vigo, J.S.; Graham, J.G.; Cabieses, F.; Fong, H.H.; Pezzuto, J.M.; Kinghorn, A.D. Activity-guided isolation of the chemical constituents of Muntingia calabura using a quinone reductase induction assay. Phytochemistry 2003, 63, 335–341. [Google Scholar] [CrossRef] [Scilit]
- Bernhard, H.O.; Thiele, K. Additional flavonoids from the leaves of Larrea tridentata. Planta Medica 1981, 41, 100–101. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Indy Tamayose, C.; Dos Santos, E.A.; Roque, N.; Costa-Lotufo, L.V.; Pena Ferreira, M.J. Caffeoylquinic acids: Separation method, antiradical properties and cytotoxicity. Chem. Biodivers. 2019, 16, e1900093. [Google Scholar] [CrossRef] [Scilit]
- Lin, J.-H.; Lin, Y.-T.; Chiou, Y.-N.; Wen, K.-C.; Liao, C.-H. Determination of flavonoids in Daphnis genkwae Flos by high performance liquid chromatography. J. Food Drug Anal. 2001, 9, 8. [Google Scholar] [CrossRef] [Scilit]
- Park, H.-J.; Kim, I.-T.; Won, J.-H.; Jeong, S.-H.; Park, E.-Y.; Nam, J.-H.; Choi, J.; Lee, K.-T. Anti-inflammatory activities of ent-16αH, 17-hydroxy-kauran-19-oic acid isolated from the roots of Siegesbeckia pubescens are due to the inhibition of iNOS and COX-2 expression in RAW 264.7 macrophages via NF-κB inactivation. Eur. J. Pharmacol. 2007, 558, 185–193. [Google Scholar] [CrossRef] [Scilit]
- Wu, J.-Z.; Morizane, C.; Iida, A.; Zhou, Z.-L.; Xu, M.; Zhang, M.; Li, R.-M.; Fujita, T. Structures of three new diterpenoids, fritillebic acid and fritillebins A and B, from bulbs of Fritillaria ebeiensis GD Yu et GQ Ji. Chem. Pharm. Bull. 1995, 43, 1448–1453. [Google Scholar] [CrossRef] [Scilit]
- Okoye, T.C.; Akah, P.A.; Omeje, E.O.; Okoye, F.B.; Nworu, C.S. Anticonvulsant effect of kaurenoic acid isolated from the root bark of Annona senegalensis. Pharmacol. Biochem. Behav. 2013, 109, 38–43. [Google Scholar] [CrossRef] [Scilit]
- Wenkert, E.; Baddeley, G.V.; Burfitt, I.R.; Moreno, L.N. Carbon-13 nuclear magnetic resonance spectroscopy of naturally-occurring substances-LVII Triterpenes related to lupane and hopane. Org. Magn. Reson. 1978, 11, 337–343. [Google Scholar] [CrossRef] [Scilit]
- Reyes, C.P.; Núñez, M.J.; Jiménez, I.A.; Busserolles, J.; Alcaraz, M.J.; Bazzocchi, I.L. Activity of lupane triterpenoids from Maytenus species as inhibitors of nitric oxide and prostaglandin E2. Bioorg. Med. Chem. 2006, 14, 1573–1579. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Dalimunthe, A.; Carensia Gunawan, M.; Dhiya Utari, Z.; Dinata, M.R.; Halim, P.; Estherina, S.; Pakpahan, N.; Sitohang, A.I.; Sukarno, M.A.; Yuandani; et al. In-depth analysis of lupeol: Delving into the diverse pharmacological profile. Front. Pharmacol. 2024, 15, 1461478. [Google Scholar] [CrossRef] [Scilit]
- Besbes, M.; Guérineau, V.; Touboul, D.; Hamza, M.H.A. Isolation and structure elucidation of acetylcholinesterase lipophilic lupeol derivatives inhibitors from the latex of the Tunisian Periploca laevigata. Arab. J. Chem. 2017, 10, S2767–S2772. [Google Scholar] [CrossRef] [Scilit]
- Kim, H.K.; Cheon, B.S.; Kim, Y.H.; Kim, S.Y.; Kim, H.P. Effects of naturally occurring flavonoids on nitric oxide production in the macrophage cell line RAW 264.7 and their structure–activity relationships. Biochem. Pharmacol. 1999, 58, 759–765. [Google Scholar] [CrossRef] [Scilit]
- Srisook, K.; Srisook, E.; Nachaiyo, W.; Chan-In, M.; Thongbai, J.; Wongyoo, K.; Chawsuanthong, S.; Wannasri, K.; Intasuwan, S.; Watcharanawee, K. Bioassay-guided isolation and mechanistic action of anti-inflammatory agents from Clerodendrum inerme leaves. J. Ethnopharmacol. 2015, 165, 94–102. [Google Scholar] [CrossRef] [Scilit]
- Choi, R.J.; Shin, E.M.; Jung, H.A.; Choi, J.S.; Kim, Y.S. Inhibitory effects of kaurenoic acid from Aralia continentalis on LPS-induced inflammatory response in RAW264. 7 macrophages. Phytomedicine 2011, 18, 677–682. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Sugahara, T.; Taguchi, Y.; Ishida, M.; Nishi, K. Anti-Inflammatory Function of Sudachitin and Demethoxysudachitin from CITRUS Sudachi. BIO Web Conf. 2025, 187, 05003. [Google Scholar] [CrossRef] [Scilit]
- Rho, H.S.; Ghimeray, A.K.; Yoo, D.S.; Ahn, S.M.; Kwon, S.S.; Lee, K.H.; Cho, D.H.; Cho, J.Y. Kaempferol and kaempferol rhamnosides with depigmenting and anti-inflammatory properties. Molecules 2011, 16, 3338–3344. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Gao, Y.; Liu, F.; Fang, L.; Cai, R.; Zong, C.; Qi, Y. Genkwanin inhibits proinflammatory mediators mainly through the regulation of miR-101/MKP-1/MAPK pathway in LPS-activated macrophages. PLoS ONE 2014, 9, e96741. [Google Scholar] [CrossRef] [Scilit]
- Joo, T.; Sowndhararajan, K.; Hong, S.; Lee, J.; Park, S.-Y.; Kim, S.; Jhoo, J.-W. Inhibition of nitric oxide production in LPS-stimulated RAW 264.7 cells by stem bark of Ulmus pumila L. Saudi J. Biol. Sci. 2014, 21, 427–435. [Google Scholar] [CrossRef] [Scilit]
- Manjia, J.N.; Njoya, E.M.; Harishchander, A.; Munvera, A.M.; Ogundolie, F.A.; Mkounga, P.; Mcgaw, L.J.; Njayou, F.N.; Moundipa, P.F. Anti-elastase, Anti-tyrosinase, and anti-inflammatory activities of three compounds isolated from Psorospermum aurantiacum: In Silico and In Vitro assays. Rev. Bras. Farmacogn. 2024, 34, 1116–1128. [Google Scholar] [CrossRef] [Scilit]
- Hafner, M.; Niepel, M.; Chung, M.; Sorger, P.K. Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs. Nat. Methods 2016, 13, 521–527. [Google Scholar] [CrossRef] [Scilit]
- Matsuda, H.; Morikawa, T.; Ando, S.; Toguchida, I.; Yoshikawa, M. Structural requirements of flavonoids for nitric oxide production inhibitory activity and mechanism of action. Bioorg. Med. Chem. 2003, 11, 1995–2000. [Google Scholar] [CrossRef] [Scilit] [PubMed]





| Compound | Inhibition of NO Production (IC50) (μM) | Inhibition of TNF-α Production (IC50) (μM) | Cytotoxicity (LC50) (μM) | Therapeutic Index (in Comparison to NO Inhibition) |
|---|---|---|---|---|
| curcumin (+ve control) | 8.5 ± 1.2 | 10.1 ± 0.5 | 34.4 ± 5.1 | 4.0 |
| kaempferol-3-O-rhamnoside (1) | >100 | NT | >100 | >1.0 |
| apigenin (2) | 16.4 ± 1.5 | 20.1 ± 3.8 | 62.1 ± 6.8 | 3.7 |
| demethoxysudachitin (3) | 25.6 ± 3.2 | >100 | >100 | >3.9 |
| hispidulin (4) | 17.6 ± 4.6 | 43.8 ± 1.9 | >100 | >5.6 |
| herbacetin 3,7,8-trimethyl ether (5) | >100 | NT | >100 | >1.0 |
| genkwanin (6) | >100 | NT | >100 | >1.0 |
| siegeskaurolic acid (7) | >100 | NT | >100 | >1.0 |
| fritillebic acid (8) | 8.8 ± 1.3 | 37.9 ± 3.5 | 76.6 ± 8.8 | 8.7 |
| kaurenoic acid (9) | 14.1 ± 0.3 | 15.2 ± 1.7 | 37.5 ± 3.3 | 2.6 |
| lup-20(29)-ene-3β,16β-diol (10) | 12.2 ± 8.8 | >100 | 28.9 ± 5.1 | 2.0 |
| lupeol (11) | 92.8 ± 10.1 | NT | >100 | >1.0 |
| Target Protein | PDB ID | Binding Energy (kcal/mol) | Amino Acid Residues |
|---|---|---|---|
| TLR4-MD-2 | 5IJC | −9.1 | ARG-434 |
| iNOS | 4NOS | −7.3 | TYR-373, GLN-263 |
| IKKβ | 4KIK | −6.4 | ARG-579, ARG-582 |
| Compound | NO Inhibition (IC50) μM | Compound | NO Inhibition (IC50) μM |
![]() | >100 | ![]() | 16.4 ± 1.5 |
![]() | 25.6 ± 3.2 | ![]() | 17.6 ± 4.6 |
![]() | >100 | ![]() | >100 |
![]() | >100 | ![]() | 14.1 ± 0.3 |
![]() | 12.2 ± 8.8 | ![]() | 92.8 ± 10.1 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Shahid, H.; Flood, J.P.; Li, F.; Zhou, X.; Münch, G.; Raju, R. In Vitro Anti-Inflammatory Activity and Molecular Docking Analysis of Compounds Isolated from Beyeria viscosa. Curr. Issues Mol. Biol. 2026, 48, 495. https://doi.org/10.3390/cimb48050495
Shahid H, Flood JP, Li F, Zhou X, Münch G, Raju R. In Vitro Anti-Inflammatory Activity and Molecular Docking Analysis of Compounds Isolated from Beyeria viscosa. Current Issues in Molecular Biology. 2026; 48(5):495. https://doi.org/10.3390/cimb48050495
Chicago/Turabian StyleShahid, Hamza, James P. Flood, Feng Li, Xian Zhou, Gerald Münch, and Ritesh Raju. 2026. "In Vitro Anti-Inflammatory Activity and Molecular Docking Analysis of Compounds Isolated from Beyeria viscosa" Current Issues in Molecular Biology 48, no. 5: 495. https://doi.org/10.3390/cimb48050495
APA StyleShahid, H., Flood, J. P., Li, F., Zhou, X., Münch, G., & Raju, R. (2026). In Vitro Anti-Inflammatory Activity and Molecular Docking Analysis of Compounds Isolated from Beyeria viscosa. Current Issues in Molecular Biology, 48(5), 495. https://doi.org/10.3390/cimb48050495











