De Novo Heterozygous GATA3 Missense Variant Causes an Unexpected Phenotype of Non-Syndromic Hearing Impairment with Apparently Recessive Inheritance
Abstract
1. Introduction
2. Results
2.1. Clinical Characterization
2.2. Genetic Study
2.3. Clinical Reassessment
2.4. Functional Assays
3. Discussion
4. Materials and Methods
4.1. Human Subjects and Clinical Testing
4.2. DNA Purification, Genotyping, and Sequencing
4.3. Functional Assays
4.3.1. Plasmid Construction
4.3.2. Western Blotting
4.3.3. Immunocytochemistry
4.3.4. Luciferase Reporter Assays
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
ACMG | American College of Medical Genetics and Genomics |
AMP | Association for Molecular Pathology |
CADD | Combined Annotation Dependent Depletion |
HDR | Hypoparathyroidism, Deafness, and Renal Disease |
HI | Hearing Impairment |
NSHI | Non-Syndromic Hearing Impairment |
REVEL | Rare Exome Variant Ensemble Learner |
SNP | Single-Nucleotide Polymorphism |
WES | Whole-Exome Sequencing |
ZnF | Zinc Finger |
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Gene | Variant | CADD Score | REVEL Score | Minor Allele Frequency | ACMG/AMP Criteria | Classification | |
---|---|---|---|---|---|---|---|
DNA | Protein | ||||||
GATA3 | c.812C>T | p.Ser271Leu | 33 | 0.863 | 0 (not reported) | PS2 (moderate), PS4 (supporting), PM2 (moderate), PP1 (supporting), PP3 (supporting) | Likely pathogenic |
Serum Levels | Subject II:1 | Subject II:2 | Units | Normal Range |
---|---|---|---|---|
Calcium | 10.2 | 9.8 | mg/dL | 8.1–10.5 |
Phosphate | 3.2 | 4.0 | mg/dL | 2.3–4.7 |
Parathyroid hormone | 23 | 27 | pg/mL | 14–72 |
Plasmid | Amount | |||
---|---|---|---|---|
pGL4.23-Il13 promoter | 200 ng | 200 ng | 200 ng | 200 ng |
pcDNA3 empty | 100 ng | - | - | - |
pcDNA3-GATA3 wild type | - | 100 ng | - | - |
pcDNA3-GATA3 p.S271L | - | - | 100 ng | - |
pcDNA3-GATA3 p.T272I | - | - | - | 100 ng |
pRL-null | 100 ng | 100 ng | 100 ng | 100 ng |
TOTAL | 400 ng | 400 ng | 400 ng | 400 ng |
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Domínguez-Ruiz, M.; Garrido, G.; Martínez-Beneyto, P.; del Castillo, F.J.; Villamar, M.; Gómez-Rosas, E.; Moreno-Pelayo, M.A.; del Castillo, I. De Novo Heterozygous GATA3 Missense Variant Causes an Unexpected Phenotype of Non-Syndromic Hearing Impairment with Apparently Recessive Inheritance. Int. J. Mol. Sci. 2025, 26, 6363. https://doi.org/10.3390/ijms26136363
Domínguez-Ruiz M, Garrido G, Martínez-Beneyto P, del Castillo FJ, Villamar M, Gómez-Rosas E, Moreno-Pelayo MA, del Castillo I. De Novo Heterozygous GATA3 Missense Variant Causes an Unexpected Phenotype of Non-Syndromic Hearing Impairment with Apparently Recessive Inheritance. International Journal of Molecular Sciences. 2025; 26(13):6363. https://doi.org/10.3390/ijms26136363
Chicago/Turabian StyleDomínguez-Ruiz, María, Gema Garrido, Paz Martínez-Beneyto, Francisco J. del Castillo, Manuela Villamar, Elena Gómez-Rosas, Miguel A. Moreno-Pelayo, and Ignacio del Castillo. 2025. "De Novo Heterozygous GATA3 Missense Variant Causes an Unexpected Phenotype of Non-Syndromic Hearing Impairment with Apparently Recessive Inheritance" International Journal of Molecular Sciences 26, no. 13: 6363. https://doi.org/10.3390/ijms26136363
APA StyleDomínguez-Ruiz, M., Garrido, G., Martínez-Beneyto, P., del Castillo, F. J., Villamar, M., Gómez-Rosas, E., Moreno-Pelayo, M. A., & del Castillo, I. (2025). De Novo Heterozygous GATA3 Missense Variant Causes an Unexpected Phenotype of Non-Syndromic Hearing Impairment with Apparently Recessive Inheritance. International Journal of Molecular Sciences, 26(13), 6363. https://doi.org/10.3390/ijms26136363