Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography
Abstract
:1. Introduction
2. Results and Discussion
2.1. X-ray Crystallographic Study on oNBTyrRS Complexed with oNBTyr
2.2. Structural Comparison with the Wild Type and the Other Mutant of MjTyrRS
2.3. Synthesis of Caged Proteins in a Cell-Free Protein Synthesis System
2.4. Crystallization of Caged Lysozyme and Decaging in the Crystal
3. Materials and Methods
3.1. Strain, Chemicals, and Enzymes
3.2. Construction of Plasmids Vectors for Protein Production
3.3. Expression, Purification, and Crystallization of the oNBTyr-tRNA Synthetase
3.4. Data Collection, Structure Determination, and Refinement of the oNBTyr-tRNA Synthetase
3.5. Preparation of E. coli S30 Extract and Construction of Cell-Free Protein Synthesis System for Site-Specific Incorporation of Nonnatural Amino Acids
3.6. A Site-Specific Introduction of oNBTyr to HEWL by a Cell-Free System and Its Purification
3.7. Crystallization, Data Collection, Structure Determination, and Refinement of HEWL_Y20oNBTyr
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Hosaka, T.; Katsura, K.; Ishizuka-Katsura, Y.; Hanada, K.; Ito, K.; Tomabechi, Y.; Inoue, M.; Akasaka, R.; Takemoto, C.; Shirouzu, M. Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography. Int. J. Mol. Sci. 2022, 23, 10399. https://doi.org/10.3390/ijms231810399
Hosaka T, Katsura K, Ishizuka-Katsura Y, Hanada K, Ito K, Tomabechi Y, Inoue M, Akasaka R, Takemoto C, Shirouzu M. Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography. International Journal of Molecular Sciences. 2022; 23(18):10399. https://doi.org/10.3390/ijms231810399
Chicago/Turabian StyleHosaka, Toshiaki, Kazushige Katsura, Yoshiko Ishizuka-Katsura, Kazuharu Hanada, Kaori Ito, Yuri Tomabechi, Mio Inoue, Ryogo Akasaka, Chie Takemoto, and Mikako Shirouzu. 2022. "Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography" International Journal of Molecular Sciences 23, no. 18: 10399. https://doi.org/10.3390/ijms231810399