Genome-Wide Identification of Auxin Response Factors in Peanut (Arachis hypogaea L.) and Functional Analysis in Root Morphology
Abstract
:1. Introduction
2. Results
2.1. Genome-Wide Identification of Peanut ARF Genes
2.2. Phylogenetic Analysis of Peanut ARFs
2.3. Gene Duplication on the Expansion of ARF Genes
2.4. Expression Profiles of AhARFs
2.5. Characterization of Downstream Target Genes of AhARFs
2.6. The Possible Regulatory Roles of AhARFs in Peanut Root Morphology
3. Discussion
4. Materials and Methods
4.1. Plant Materials and Growth Conditions
4.2. Genome-Wide Identification of AhARFs, AdARFs, and AiARFs
4.3. Chromosome Distribution, Gene Structure, Phylogenetic Analysis, and cis-Elements Analysis
4.4. Syntenic and Genome Duplication Analysis of Peanut ARFs
4.5. Genome-Wide Search for Downstream Targets of AhARFs
4.6. Expression Analysis of AhARFs
4.7. Root Morphology Analysis
4.8. Statistical Analysis
4.9. Subcellular Localization Analysis
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Gene 1 | Gene 2 | Ka | Ks | Ka/Ks | Divergence Time (Mya) |
---|---|---|---|---|---|
AhARF3 | AhARF34 | 0.0377 | 0.0517 | 0.7288 | 6.37 |
AhARF1 | AhARF31 | 0.0116 | 0.0166 | 0.6989 | 2.04 |
AhARF18 | AhARF46 | 0.0349 | 0.0571 | 0.6102 | 7.03 |
AhARF17 | AhARF47 | 0.0083 | 0.0169 | 0.4911 | 2.08 |
AhARF26 | AhARF59 | 0.0141 | 0.0304 | 0.4641 | 3.74 |
AhARF6 | AhARF37 | 0.0295 | 0.0644 | 0.4585 | 7.93 |
AhARF28 | AhARF61 | 0.0045 | 0.0107 | 0.4234 | 1.32 |
AhARF12 | AhARF43 | 0.0132 | 0.0320 | 0.4110 | 3.94 |
AhARF16 | AhARF48 | 0.0165 | 0.0416 | 0.3973 | 5.12 |
AhARF15 | AhARF49 | 0.0097 | 0.0323 | 0.3015 | 3.98 |
AhARF25 | AhARF58 | 0.0138 | 0.0461 | 0.2984 | 5.68 |
AhARF40 | AhARF61 | 0.1741 | 0.6958 | 0.2502 | 85.69 |
AhARF28 | AhARF40 | 0.1844 | 0.7419 | 0.2486 | 91.36 |
AhARF37 | AhARF56 | 0.1638 | 0.6923 | 0.2367 | 85.25 |
AhARF19 | AhARF50 | 0.0049 | 0.0206 | 0.2362 | 2.54 |
AhARF36 | AhARF57 | 0.1618 | 0.7533 | 0.2148 | 92.77 |
AhARF14 | AhARF45 | 0.0077 | 0.0442 | 0.1741 | 5.44 |
AhARF5 | AhARF36 | 0.0025 | 0.0150 | 0.1645 | 1.85 |
AhARF39 | AhARF58 | 0.1335 | 0.8681 | 0.1538 | 106.91 |
AhARF11 | AhARF42 | 0.0023 | 0.0188 | 0.1234 | 2.32 |
AhARF2 | AhARF33 | 0.0025 | 0.0311 | 0.0805 | 3.83 |
AhARF22 | AhARF56 | 0.0022 | 0.0273 | 0.0793 | 3.36 |
AhARF8 | AhARF38 | 0.0034 | 0.0525 | 0.0647 | 6.47 |
AhARF9 | AhARF40 | 0.0013 | 0.0204 | 0.0617 | 2.51 |
AhARF20 | AhARF51 | 0.0005 | 0.0329 | 0.0154 | 4.06 |
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Luo, L.; Wan, Q.; Yu, Z.; Zhang, K.; Zhang, X.; Zhu, S.; Wan, Y.; Ding, Z.; Liu, F. Genome-Wide Identification of Auxin Response Factors in Peanut (Arachis hypogaea L.) and Functional Analysis in Root Morphology. Int. J. Mol. Sci. 2022, 23, 5309. https://doi.org/10.3390/ijms23105309
Luo L, Wan Q, Yu Z, Zhang K, Zhang X, Zhu S, Wan Y, Ding Z, Liu F. Genome-Wide Identification of Auxin Response Factors in Peanut (Arachis hypogaea L.) and Functional Analysis in Root Morphology. International Journal of Molecular Sciences. 2022; 23(10):5309. https://doi.org/10.3390/ijms23105309
Chicago/Turabian StyleLuo, Lu, Qian Wan, Zipeng Yu, Kun Zhang, Xiurong Zhang, Suqing Zhu, Yongshan Wan, Zhaojun Ding, and Fengzhen Liu. 2022. "Genome-Wide Identification of Auxin Response Factors in Peanut (Arachis hypogaea L.) and Functional Analysis in Root Morphology" International Journal of Molecular Sciences 23, no. 10: 5309. https://doi.org/10.3390/ijms23105309