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Review

The Relationship between the Gut Microbiome and Metformin as a Key for Treating Type 2 Diabetes Mellitus

by
Chae Bin Lee
1,
Soon Uk Chae
1,
Seong Jun Jo
1,
Ui Min Jerng
2 and
Soo Kyung Bae
1,*
1
College of Pharmacy and Integrated Research Institute of Pharmaceutical Sciences, The Catholic University of Korea, Bucheon 14662, Korea
2
Department of Internal Medicine, College of Korean Medicine, Sangji University, Wonju 26339, Korea
*
Author to whom correspondence should be addressed.
Int. J. Mol. Sci. 2021, 22(7), 3566; https://doi.org/10.3390/ijms22073566
Submission received: 28 February 2021 / Revised: 22 March 2021 / Accepted: 27 March 2021 / Published: 30 March 2021
(This article belongs to the Special Issue Tissue-Specific Direct and Indirect Effects of Metformin and Its Application)
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Abstract

:
Metformin is the first-line pharmacotherapy for treating type 2 diabetes mellitus (T2DM); however, its mechanism of modulating glucose metabolism is elusive. Recent advances have identified the gut as a potential target of metformin. As patients with metabolic disorders exhibit dysbiosis, the gut microbiome has garnered interest as a potential target for metabolic disease. Henceforth, studies have focused on unraveling the relationship of metabolic disorders with the human gut microbiome. According to various metagenome studies, gut dysbiosis is evident in T2DM patients. Besides this, alterations in the gut microbiome were also observed in the metformin-treated T2DM patients compared to the non-treated T2DM patients. Thus, several studies on rodents have suggested potential mechanisms interacting with the gut microbiome, including regulation of glucose metabolism, an increase in short-chain fatty acids, strengthening intestinal permeability against lipopolysaccharides, modulating the immune response, and interaction with bile acids. Furthermore, human studies have demonstrated evidence substantiating the hypotheses based on rodent studies. This review discusses the current knowledge of how metformin modulates T2DM with respect to the gut microbiome and discusses the prospect of harnessing this mechanism in treating T2DM.

1. Introduction

Type 2 diabetes mellitus (T2DM) is one of the most common chronic metabolic disorders and is characterized by hyperglycemia resulting from the combination of insulin resistance and inadequate insulin secretion [1,2,3,4]. The number of people with T2DM has drastically increased over the past several decades [1]. Metformin, a biguanide class drug, is recommended by the American Diabetes Association and European Association for the Study of Diabetes as a first-line medicine for the treatment of T2DM [2]. Metformin is a derivative of phenformin and buformin from galegine in Galega officinalis, traditionally used to decrease blood sugar and relieve the symptoms of diabetes (Figure 1) [3,4]. Among the three biguanides, phenformin and buformin were withdrawn from the market due to the high frequency of lactic acidosis in the 1970s. However, metformin showed superior safety and better efficacy in the treatment of T2DM [5,6,7,8,9]. These advantages for clinical use have resulted in metformin being widely used for more than 60 years [5]. Metformin does not target a specific pathway or disease mechanism [4]; therefore, studies have aimed to reveal the mechanism of action of metformin related to the treatment of cancer and cardiovascular diseases [1,2,3,4,5]. Metformin exhibits the peak plasma concentrations in 3 h with Cmax 1.0–1.6 mg/L for dose of 500 mg and approximately 55% of bioavailability ([6] and refences therein). After absorption, metformin is distributed in the liver, kidneys, adrenal glands, and pancreas at about seven-fold higher concentration than that of the serum [7,8]. Based on the evidence suggesting a higher accumulation of metformin in the liver as well as another report by Rena et al. [9], the liver is a potential target organ of metformin [10,11,12]. Several studies have suggested that metformin suppresses the hepatic gluconeogenesis resulting from glucose tolerance modulation mediated by the adenosine monophosphate-activated protein kinase (AMPK) activity [3,13,14]. Recent evidence from three studies suggests that the gut is a major target of metformin action and not the liver. First, metformin when administered intravenously, instead of orally, demonstrated no glucose-lowering effects [15,16,17]. Further, the jejunum tissue was found to exhibit a metformin concentration of up to 2000 μmol/kg of tissue, which was 30–300 times higher than the plasma concentrations [18,19,20]. The jejunum biopsy under pre-dose and post-dose of metformin demonstrated the gastrointestinal tract as a prominent target of metformin [18]. Second, the organic cation transporter (OCT) 1, expressed in the membrane of enterocytes, might be possibly involved in the absorption of metformin from the intestinal lumen [10,21]. According to Dujic et al. [22], a reduced function of OCT1 might increase the intestinal metformin concentration and the risk of gastrointestinal intolerance in the metformin-treated patients. Finally, the gut-restricted glucose-lowering effect of metformin was observed for intermediate-release metformin, extended-release metformin, and delayed-release metformin, and the same dose of metformin was more effective through those dosage forms than extended-release form [23]. Although various putative mechanisms of glucose homeostasis modulation in the gut by metformin have been proposed, more studies are needed to establish these hypotheses.
Microbiome in the human body assist in the expansion of host genomes, by facilitating the host’s metabolism and physiology [24,25]. Over the last few decades, the development of sequencing technologies and drastic progress in population-scale studies have revealed the host and microbiome relationship. Large-scale research projects on the microbiome have been actively conducted, such as the Human Microbiome Project (HMP) consortium funded by the United States National Institutes of Health (NIH) and the Metagenomics of the Human Intestinal Tract (MetaHIT) consortium funded by the European Commission [24]. A microbiome study demonstrated that the human gut microbiome abundance correlates with metabolic markers, such as adiposity, insulin resistance, and dyslipidemia [26]. Furthermore, gut dysbiosis has also been observed in T2DM patients [27,28,29,30,31,32,33,34,35]. Based on the hypothesis that metformin targets the human gastrointestinal tract, the gut microbiome has attracted attention as a key factor in the treatment of T2DM [36,37,38,39,40,41]. Thus, this review focused on the various studies related to the gut microbiome and its association with the anti-diabetic effects of metformin.

2. Gut Microbiome and T2DM

Over the past decade, several studies have demonstrated that patients with T2DM, obesity, or inflammatory bowel diseases often show dysbiosis in the gut microbiota [42,43,44,45]. The report by Larsen et al. [30] differentiated the composition of the gut microbiota in the T2DM patients from that in the non-diabetic adults (Table 1), and other studies have demonstrated dysbiosis in T2DM patients under different conditions, such as subject’s race and co-administration with other drugs. According to Larsen et al. [30], at the phylum level, the abundance of Firmicutes in T2DM patients was lower than that in the control group, and Bacteroidetes and Proteobacteria were more abundant than in the control group. The tendency of abundance at the phylum level was similar among the other clinical trials [29,30,33,34,35]. Furthermore, at the genus level, Roseburia, a butyrate-producing bacterium, was less abundant in the T2DM patients [27,29,30,32]. These results were in line with the other studies showing an increase in the abundance of Roseburia and insulin sensitivity after intestinal microbiota transplantation from lean donors to recipients with metabolic syndrome [46]. In addition, the abundance of Lactobacillus spp. was higher in T2DM patients than in the control groups [28,29,30]. The abundance of Lactobacillus spp. was positively correlated with blood glucose levels in the two clinical trials [29,30] and these results were consistent with those evident in a mice study [47]. The positive correlation between Lactobacillus spp. and the glucose levels might be due to the immunomodulatory role of Lactobacillus spp. [48]. Similarly, dysbiosis in T2DM patients might be due to the interaction of the gut microbiota with the host immune system, which was supported by several animal studies. In particular, the gut microbiota, which communicates with the host through pattern recognition receptors, such as toll-like receptors (TLRs), contributes to the development of insulin resistance with increased plasma LPS concentration [49,50]. According to Larsen et al. [30], the abundance of Gram-negative bacteria, which can stimulate the immune system like TLRs, was increased in T2DM patients. The role of TLRs in insulin resistance has been established through various studies. The TLR-5 deficient mice became obese and exhibited a metabolic syndrome. Further, when the gut microbiome from the TLR-5 deficient mice was transplanted to the germ-free mice, the germ-free mice showed a similar phenomenon as the TLR-5 mice [51]. In addition, Song et al. [52] reported that TLR-4 activation is associated with insulin resistance in adipocytes. Previously cited clinical studies have identified SCFA-producing bacteria as the key for dysbiosis in T2DM patients in response to the immune responses [27,28,29,32,33,34]. The gut microbiota has been considered as one of the factors affecting T2DM; thus, the gut microbiota might be considered a potential target for the treatment of T2DM. Several studies have demonstrated the positive effects of probiotics for the treatment of T2DM, such as the decrease in systemic LPS levels and improvement in insulin resistance [53,54].

3. Potential Mechanisms of Metformin on the Gut Microbiome

3.1. Regulation of Glucose Homeostasis

Based on the knowledge regarding metformin’s gut-restricted glucose-lowering effects, further investigations have been undertaken to understand the role of metformin in the gut (Figure 2) [23]. In particular, the upper small intestine is responsible for triggering gut peptide-dependent negative feedback signals, followed by nutrient intake [62,63]. One of the signals is glucagon-like peptide-1 (GLP-1) release via sodium-glucose cotransporter-1 (SGLT-1), which plays a dominant role in GLP-1 secretion via the transport of 3-O-methyl glucose [64,65,66,67,68]. In this regard, metformin exhibited an increase in GLP-1 secretion and SGLT1 expression in the upper small intestine, suggesting that metformin might interact with the upper small intestinal SGLT-1 mediated glucose-sensing pathway [69,70,71,72]. According to this hypothesis, the germ-free mice, physiologically used for the “microbial knockout” model, showed alterations in the glucose metabolism-related genes in the gut when the microbiota was inoculated from the healthy mice [73]. In addition, prebiotics and probiotics changed the gut microbiome in relation to changes in GLP-1 secretion [53,74,75]. Based on these relationships, Bauer et al. [76] demonstrated that metformin altered the upper small intestinal microbiota, resulting in the upregulation of SGLT-1 expression. Additionally, a high-fat diet in rodents reduced SGLT-1 expression, which was recovered on metformin administration [76]. This effect might be due to the alteration in microbiota in the upper small intestine, demonstrated by the transplantation of microbiota in the metformin-treated high-fat diet (HFD)-fed rats to untreated HFD-fed rats. In particular, the abundance of Lactobacillus exhibited significant recovery from dysbiosis, suggesting that Lactobacillus is related to SGLT-1 modification after metformin administration. This result was also observed in the metformin-treated HFD-fed mice with increased Sglt1 mRNA levels in the upper small intestine [59]. In addition, a previous study revealed that upregulation of SGLT-1 mediated metabolites produced by Lactobacillus resulted in the increased glucose uptake in Caco-2 cells, and this study supported that Lactobacillus might be related to the glucose modulation of metformin [77]. In terms of modulating the glucose-sensing pathway, Lactobacillus was shown to modulate the glucose-sensing machinery related to other pathways, not only for SGLT-1. When Caco-2 cells were incubated with the supernatant from the cultured Lactobacillus, there was an increase in the expression of the GPR120 gene, known to affect the expression of GLP-1 [78,79]. Furthermore, L. gasseri, one of the species in the genus Lactobacillus, was shown to affect the long-chain acyl-CoA synthetase (ACSL)-dependent glucoregulatory fatty acid-sensing pathway [80]. Thus, this evidence suggests that Lactobacillus plays a role in modulating glucose metabolism and might be associated with the improvement of glucose parameters in rodents and humans treated with probiotic supplements containing Lactobacillus [74,75].
In conclusion, metformin recovered dysbiosis in HFD-rats, and the genus Lactobacillus was identified as key for modulating the glucose-sensing pathway [76]. However, the mechanism by which metformin alters the abundance of Lactobacillus remains unknown. Thus, future studies might be required to elucidate the mechanism by which metformin affects the abundance of the gut microbiota. Furthermore, alteration of Lactobacillus by metformin and T2DM was not consistent between the animal and human studies, as shown in Table 1 and Table 2. For these results, Sato et al. [28] suggested that in human studies, the innate bacteria and bacteria originating from foods such as yogurt were not distinguished. In addition, Bauer et al. [76] investigated the anti-diabetic effect of metformin on the upper small intestine, comparing changes in the gut microbiome in the upper and distal intestines. Hence, these confounding factors were also regulated to unveil the relationship between metformin and the genus Lactobacillus.

3.2. Effects on Bacteria Producing Short-Chain Fatty Acid

Short-chain fatty acids (SCFAs), including acetate, propionate, butyrate, and lactate, are the major products of fermentation of undigestible food by the anaerobic bacteria. Based on the increasing number of studies on the relationship between the gut microbiota and metabolic disease, the effects of SCFAs produced by the gut microbiota on metabolic disease have attracted interest [81]. Indeed, SCFAs exhibit beneficial effects on glucose metabolism via multiple pathways, including activation of gut hormone receptors (e.g., Ffar2 and Ffar3) [81,82,83,84,85]. In particular, SCFAs can bind to the G protein-coupled receptor (GPR)-41 (referred to as FFAR3) and GPR-43 (referred to as FFAR2), expressed on enteroendocrine L cells, stimulating the release of GLP-1 and peptide YY that regulate glucose metabolism and insulin secretion [86,87].
Some studies have suggested that gut dysbiosis in T2DM alters the SCFA concentration. First, rodents have been used to reveal the relationship between metformin’s positive effects and SCFAs [88,89,90,91,92,93,94], specifically in the phylum Bacteroidetes, abounding in the intestine, which mainly produces acetate and propionate, imparting protective effects against insulin resistance [81,89,95,96]. The abundance of Bacteroides, one of the genera in the phylum Bacteroidetes, were observed to increase with metformin treatment in high-fat diet mice (Table 2) [88,89,90,91]. Following an increase in the abundance of Bacteroides, the concentration of SCFAs in feces of those treated with metformin was higher than that in db/db mice [91]. In vivo experiments using rodents, in vitro gut microbiome culture [97], and in silico modeling demonstrated similar results [98]. However, Brandt et al. [99] showed a negligible difference in the abundance of Bacteroides, as shown in Table 2 [89,90]. These studies used the same animal model C57BL/6J mice, but the gut microbiome was altered owing to the difference in sex, similar to the previous studies that revealed sex-dependent alterations in the gut microbiome [100,101]. Bacteroides were observed to be more abundant in female mice than in male mice. In this respect, Lee et al. [88] suggested that gut microbiota could be affected by hormone levels, subsequently influencing glucose and lipid metabolism [102,103] and one of the studies demonstrated that progesterone promotes the growth of oral Bacteroides species [104]. Although various studies have demonstrated a positive relationship between the abundance of Bacteroides and therapeutic effect of metformin, future studies should consider sexual effects to understand the effect of the hormones on Bacteroides.
Butyricimonas spp., one of the genera in the phylum Bacteroidetes, produces butyrate, a moiety known to increase insulin sensitivity [105] and regulate the gut hormones [106]. Butyricimonas spp. were increasingly abundant in metformin-treated mice [89,91]. Besides this, the abundance of genus Allobaculum, a butyrate producer [107], and Parabacteroides, producer of succinate, [108] were also increased in metformin-treated mice [89,90,109,110]. Abundant microbiota-producing SCFAs were also observed in the human fecal samples, details regarding the same are given in Section 4.
In summary, an increase in the abundance of gut microbiota-producing SCFAs might be considered as an anti-diabetic mechanism mediated by metformin treatment. Although gut microbiota producing SCFAs (e.g., the genus Allobaculum, Bacteroides, and Parabacteroides) might impart beneficial metabolic homeostasis in the host, the mechanism by which metformin affects the gut microbiota is unclear.

3.3. Enhancement of the Gut Permeability

Several studies have revealed that metabolic disorders are associated with increased gut permeability, which further increases the intestinal LPS permeability and induces chronic inflammation that causes insulin resistance [49,111,112,113]. The mucus layer plays an important role in maintaining gut permeability and gastrointestinal functions by providing substrates for bacterial growth adhesion and protection [114,115,116]. From this perspective, several studies suggest that colonization of several gut microbiota on the mucus layer induces diabetes or metabolic disorders from a dysbiosis-mediated high-fat diet [110,117,118].
Akkermansia muciniphila, belonging to the phylum Verrucomicrobia, colonizes the mucus layer of the human gastrointestinal tract and exhibits 3%–5% more microbial community in the healthy subjects than in the diabetic subjects (patients or animals) ([116,119] and references therein). A. muciniphila is an intestinal mucin-degrading bacterium that simultaneously stimulates mucin production, playing a key role in regulating glucose homeostasis in A. muciniphila [88,110,120]. Several studies have revealed that metformin treatment increases the abundance of A. muciniphila in the gut [88,89,90,91,99,109,110,121,122,123]. According to the study of Shin et al. [110], A. muiciniphila administered to HFD-fed mice showed improvement in glucose tolerance, consistent with metformin treatment in HFD-fed mice. In addition, they revealed that the proportion of A. muciniphila increased in metformin-treated HFD-mice and showed a positive correlation with the number of goblet cells producing mucin. As previously reported, an increase in the mucus layer by goblet cells might function as a barrier for LPS [49,111,112]. In this regard, Ahmadi et al. [92] suggested that metformin suppresses Wnt signaling, a critical pathway to regulate iSCs differentiation to goblet cells. In addition, these alterations were observed when the fecal microbiome was transplanted from the metformin-treated mice to control mice, suggesting that modulation of the gut microbiome by metformin is also associated with an increase in the goblet cells [92]. In this context, the expression of MUC2 and MUC5 genes, which contribute to the mucin levels, was increased in the metformin -treated HFD female mice [88]. With an increase in the expression of MUC2, several studies demonstrated that the tight-junction proteins, such as Zonulin-1 and occludin, were recovered after metformin treatment [92,94,99,124], and the intestinal permeability was reduced [94].
Table
Table 2. Alteration of the gut microbiota-mediated metformin treatment in animal studies. ↑ (increase), ↓ (decrease), – (no alteration), NA (not applicable), Ref * (reference number).
Table 2. Alteration of the gut microbiota-mediated metformin treatment in animal studies. ↑ (increase), ↓ (decrease), – (no alteration), NA (not applicable), Ref * (reference number).
Ref *AnimalStudy DesignGut MicrobiotaBiochemical
Alterations
[76]RatsMetformin treatment in high-fat dietversus without metformin treatment in high fat diet
Family: Lactobacillaceae ↑
Genus: Achromobacter –, Acinetobacter –, Azorhiziphilus –, Enterococcus –, Escherichia –, Klebsiella –, tobacillus ↑, Sarcina –, Stenotrophomnas –		NA
[88]MiceMetformin treatment in high-fat dietversus without metformin treatment in high fat diet
α-diversity (Shannon): ↓
Phylum: Bacteroidetes ↑, Verrucomicrobia ↑
Family: Bacteroidaceae ↑, Clostridiales familyXIII ↑, Incertae sedis ↑, Rikenellaceae ↑, Ruminococcaceae ↑, Verrucomicrobioaceae ↑
Species: Akkermansia muciniphila ↑, Clostridium cocleatum ↑		Inflammation scores –
Metformin treatment in normal dietversus without metformin treatment in normal diet
α-diversity (Shannon): –
Phylum: Bacteroidetes –
Family: Rikenellaceae ↑, Ruminococcaceae ↑, Verrucomicrobioaceae ↑
Genus: Alistipes spp. ↑, Akkermansia spp. ↑, Clostridium spp. ↑		NA
[89]MiceMetformin treatment for 16 weeks in high-fat dietversus without metformin treatment in high fat diet
α-diversity (observed OTU): –
Phylum: Bacteroidetes ↑, Firmicutes ↓, Verrucomicrobia ↑
Genus: Akkermansia ↑, Bacteroides ↑, Butyricimonas ↑, Parabacteroides ↑		IL-6 mRNA ↓
IL-1β mRNA ↓
[90]MiceMetformin treatment for 24 weeks in high-fat dietversus without metformin treatment in high fat diet
α-diversity (Shannon): ↓
Phylum: Bacteroidetes ↑, Firmicutes ↓, Verrucomicrobia ↑
Family: Desulfovibrionaceae
Genus: Akkermansia ↑, Bacteroides ↑, Christensenella ↑,
Coprococcus↓, Dorea ↓, Lachnoclostridium ↓, Parabacteroides ↑, Papillibacter ↓, Oscillospira ↓, Ruminococcus ↓, Desulfovibrio ↓, Muribaculum ↓		Plasma threonine ↓,
methionine sulfoxide ↓, Tetradecanoylcarnitine ↓, Hexadecenoylcarnitine ↓
[91]MiceMetformin treatment in obese mice (db/db mice)versus without metformin treatment in obese mice
(db/db mice)
α-diversity (Shannon): ↑
Genus: Akkermansia ↑, Butyricimonas ↑, Clostridium ↓,
Coprococcus ↑, Dehalobacterium ↑, Dorea ↑, Lactobacillus ↑,
Oscillospira ↑, Parabacteroides ↓, Paraprevotella ↑, Prevotella ↓, Proteus ↓, Ruminococcus ↑		Total SCFA concentration
in feces ↑
Acetic acid ↑, Butyric acid ↑
LPS levels ↓
[92]MiceMetformin treatment in high-fat dietversus without metformin treatment in high fat diet
α-diversity (Shannon, evenness): –
Phylum: Bacteroidetes ↑
Family: Coriobacteriaceae ↓, Ruminococcaceae ↑, S24_7 ↑, Veilonellaceae ↓
Genus: Dorea ↓, Dehalobacterium ↓, Lactobacillus ↓, Lactococcus ↑, Roseburia ↓, SMB53 ↓		IL-6 ↓, IL-1β ↓, TNF α ↓
Taurine ↑, Butyrate ↑, Total Bile acids ↑, Propionate ↑, Leucine ↑, Creatinine ↓,
Sarcosine ↓, Glutamate ↓,
Pyruvate ↓, Formate ↓
[93]RatsMetformin treatment in high-fat diet combined with a low dose streptozocinversus without metformin treatment in high fat diet
α-diversity (Simpson, Shannon): ↑
Class: Coriobacteriia ↑
Family: S24_7 ↑		Total SCFAs ↑, Butyric acid ↑, Isovaleric acid ↑
[94]RatsMetformin treatment in high-fat diet combined with a low dose streptozocin
versus without metformin treatment in high fat diet
α-diversity (Chao1): ↑
Family: S24_7 ↓
Genus: Anaerotruncus ↑, Escherichia-Shiegella ↓, Eubacterium
xylanophilum ↑, Lachnospiraceae NK4A136 ↑, Lachnospiraceae-UCG_006 ↑, Roseburia ↑		Serum LPS ↓,
Serum CRP↓,
Serum TNF α ↓,
Serum IL-6 ↓
Propionate in cecum ↑,
Butyrate in cecum ↑
[99]Mice
(female)		Metformin treatment in fat, fructose and
cholesterol rich diet		versus without metformin treatment in fructose and
cholesterol rich diet
Family: Alloprevotella ↓
Genus: Bacteroides –, Romboutsia ↓
Species: Akkermansia muciniphila –, Lactobacillus animalis ↓		TNF α ↓
Endotoxin ↓
[109]MiceMetformin treatment for 5 weeks in high-fat diet
combined with a low dose streptozocin		versus without metformin treatment in high fat diet
α-diversity (observed OTU): –
Genus: Akkermansia ↑, Bacteroides spp. ↓		NA
[110]MiceMetformin treatment in high-fat dietversus without metformin treatment in high fat diet
Phylum: Verrucomicrobia ↑,
Genus: Akkermansia ↑, Alistipes ↑, Anaerotruncus ↓, Blautia ↓, Lactococcus ↓, Lactonifactor ↓, Lawsonia ↓, Odoribacter ↓,
Parabacteroides ↓		IL-6 mRNA ↓
IL-1β mRNA ↓
[121]MiceMetformin treatment
for 30 days		versus without metformin treatment in healthy mice
α-diversity (Shannon): –
Class: Lachnopiraceae ↓, Porphyromonadaceae ↑, Prevoltellaceae ↑, Rhodobacteraceae ↓, Rikenellaceae ↑, Verrucomicrobiaceae ↑		NA
[123]RatsMetformin treatment
in high-fat diet		versus without metformin treatment in high fat diet
α-diversity (Shannon): ↓
Phylum: Bacteroidetes –, Firmicutes –, Proteobacteria ↑
Species: Akkermansia ↑, Allobaculum ↑, Bacteroides ↑, Blautia ↑, Butyricoccus ↑, Clostridium ↓, Klebsiella ↑, Lactobacillus ↑,
Parasutterella ↑, Phascolarctobacterium ↑, Prevotella ↑,
Roseburia ↓		NA
[124]RatsMetformin treatment
in high-fat diet
combined with a low dose streptozocin		versus without metformin treatment in high fat diet
α-diversity (Chao1, Shannon): ↑
Phylum: Bacteroidetes ↑, Firmicutes ↓, Proteobacteria ↓
Order: Clostridiales ↑, Enterobacteriales ↓, Lactobacillales ↑
Genus: Akkermansia ↑, Desulfovibrio ↓, Lachnospiraceae NK4A136 ↓, Lactobacillus ↑, Roseburia ↑		NA
[125]MiceMetformin treatment for 3 weeks in high-fat dietversus without metformin treatment in high fat diet
α-diversity (Shannon, evenness): –
Genus: Akkermansia ↑, Allobaculum ↓, Clostridium ↓,
Enterococcus ↓, Lactococcus ↓, Leuconostoc ↓, Oscillospira ↑, Parabacteroides ↑, Prevotella ↑, Ruminococcus ↓, Streptococcus ↓		NA
[126]Mice withMetformin treatment for 5 weeks in high-fat diet
combined with a low dose streptozocin		versus without metformin treatment in high fat diet
α-diversity (Chao1): ↓
Phylum: Bacteroidetes ↓, Firmicutes ↑, Proteobacteria ↓
Genus: Lactobacillus ↑		NA
[127]MiceMetformin treatment
in high-fat diet		versus without metformin treatment in high fat diet
α-diversity (Shannon, evenness): –
Species: Bacteriodetes fragilis ↓, Escherichia coli ↓		Serum endotoxin ↓
IL-6 ↓, TLR4 ↓
[128]RatsMetformin treatment
in high-fat diet
combined with a low dose streptozocin		versus without metformin treatment in high fat diet
α-diversity (Chao1): ↑
Phylum: Bacteroidetes ↑, Proteobacteria ↓, Verrucomicrobia ↓
Family: Alcaligenaceae ↑, Peptococcaceae ↑, Prevotellaceae ↑, S24_7 ↑
Genus: Prevotella ↑, Sutterella ↑, 02d06 ↑, rc4 ↑		IL-6 mRNA in pancrease ↓, TNF α mRNA in pancrease ↓, LPS ↓
[129]RatsMetformin treatment
in high-fat diet
combined with a low dose streptozocin		versus without metformin treatment in high fat diet
Genus: Bifidobacterium ↑, Lactobacillus ↑
Species: Clostridium perfringens ↓, Escherichia coli ↓		Plasma endotoxin ↓, Total SCFAs in cecum ↑, Lactic acid in cecum ↑,
Acetic acid in cecum ↑
[130]RatsMetformin treatment in
Otsuka Long-Evans Tokushima Fatty (OLETF) rats		versus without metformin treatment
Genus: Akkermansia ↑, Prevotella ↓, Roseburia ↑
Species: Escherichia coli ↓		Serum endotoxin ↓,
Fecal endotoxin ↓,
serum TNF α ↓,
serum IL-6 ↓
[131]RatsMetformin treatment in Zucker diabetic fatty rats versus without metformin treatment
α-diversity (Shannon): –
Phylum: Bacteroidetes –, Firmicutes –↑, Proteobacteria ↓,
Tenericutes –, Verrucomicrobia ↑
Genus: Lactobacillus ↑
Species: Lactobacillus intestinalis ↑, Lactobacillus johnsonii ↑		NA
Furthermore, A. muciniphila has been shown to strengthen the intestinal barrier by increasing the expression of the tight junction proteins [132,133,134]. Based on this supporting evidence, metformin might be capable of reducing gut permeability via increased expression of the mucin and tight-junction proteins. However, Shin et al. [110] revealed that there was no substantial change in the gut permeability of LPS and suggested that increased goblet cells may act as a barrier against LPS by producing immune-effector molecules [135,136]. These differences among studies might be due to the duration of treatment, dosage, or the amount of A. muciniphila in the gut. In addition, the in vitro culture [132,133,134] using bacteria is complex; thus, it might be different from the in vivo studies [88,89,90,91,99,109,110,121,122,123].
In conclusion, the increase in the abundance of A. muciniphila by metformin treatment promotes mucin production, which might recover the increased gut permeability induced by high-fat diets or metabolic disorders. However, until now, the direct effects of metformin on cellular pathways to increase A. muciniphila remain unclear. Thus, further investigation to identify the physiological pathway by which metformin increases A. muciniphila will help understand the unidentified effects of metformin on the gut microbiota.

3.4. Modulation of the Immune Response

In the past decade, accumulating evidence from a variety of animal models or clinical studies has shown that metabolic disorders, including T2DM, are associated with chronic or subacute tissue inflammation in the adipose tissue and liver, causing insulin resistance [137,138,139,140,141]. Several studies in T2DM, have reported that metformin modulates inflammation via inflammatory modulating signaling pathways, such as STAT3 signaling [142] or the NF-κB (nuclear factor kappa light chain enhancer of activated B cells) signaling pathway [94,143,144]. Metformin directly suppresses the release of an inflammatory cytokine such as interleukin 6 (IL-6), interleukin 1β (IL-1β), and TNF-α (tumor necrosis factor– α) [92,127,128]. Thus, several studies have reported alterations in the expression of IL-6 following metformin treatment, and some reports have even showed that the alteration of microbiota due to metformin treatment was related to the modulation of inflammation.
In detail, A. muciniphila, the abundance of which increased upon metformin treatment as mentioned above, also exhibited anti-inflammatory effects in the gut, consistent with previous studies that revealed the anti-inflammatory effect of A. muciniphila [110,145,146]. Shin et al. [110] demonstrated that decreased regulatory T cells, a regulator of immune responses, in the stromal vascular fraction of the HFD-control mice was recovered by A. muciniphila and metformin treatment. Furthermore, the IL-6 and IL-1β mRNA levels were significantly decreased in A. muciniphila on metformin treatment [110]. In this context, a negative correlation can be drawn between the abundance of A. muciniphila upon metformin treatment and inflammatory markers, such as inflammatory cytokines or LPS concentration [89,91,121,122]. These effects of A. muciniphila on inflammation have also been demonstrated in human studies (Clinical Trials.gov Identifier: NCT02637115) with fewer inflammation markers and improved insulin sensitivity [147].
Likewise, the abundance of Bacteroides and Butyricimonas also increased upon metformin treatment [89,90,91,97,98,109,123]. In particular, Lee et al. [89] revealed that IL-6 expression negatively correlated with the abundance of Bacteroides and Butyricimonas. Above all, IL-6 possesses not only pro-inflammatory effects but also attenuates insulin signaling in adipocytes [148,149,150]. Thus, decreased IL-6 expression on metformin treatment may contribute to its anti-diabetic effect. In addition, Lee et al. [89] showed that the expression of IL-1β, which is related to insulin resistance, decreased while the abundance of Bacteroides and Butyricimonas was increased. The tendency to decrease the expression of IL-6, IL-1β and TNF-α was also observed in other studies, but the types of bacteria that correlated with the expression of inflammatory cytokines were different [92,94,128,130]. With the inhibition of pro-inflammatory cytokines, modulation of the inflammatory signaling pathway is a potential mechanism to attenuate inflammation. The TLR/NF-κB signaling pathway also plays a role in intestinal inflammation [151]. Zhang et al. [91] demonstrated that the metformin-treated group exhibited downregulation of the intestinal TLR/NF-κB signaling activities. A similar result was observed wherein phosphorylation of IKKα/β upstream of NF-κB signaling was decreased in metformin-treated mice [99]. In addition, abundance of other gut bacteria increased in the metformin-treated group and were known to interact with the host immune response. For example, Roseburia is more abundant in the metformin-treated group and is known to inhibit the activity of NF-κB [92,94,124,130,152,153]. In addition, the genus Lactobacillus and several Lactobacillus species have been shown to modulate inflammation, as reported in previous studies [154,155,156,157]. Thus, future studies should be warranted to unveil how metformin prevents the host inflammatory response related to the alteration of gut bacteria.
To conclude, various inflammatory markers were correlated with the alteration of bacteria on metformin treatment. Furthermore, these effects have also been supported by other studies that demonstrated the therapeutic effects of metformin on inflammatory diseases (e.g., non-alcoholic fatty liver disease and polycystic ovary syndrome) through interaction with the gut microbiota [99,158].

3.5. Actions on the Circulation of the Bile Acids

Bile acids are synthesized from cholesterol in the liver and secreted into the intestine, following which cholic acid and chenodeoxycholic acid are converted to secondary bile acids, such as deoxycholic acid and lithocholic acid, via enzymes and gut microbiota. For several decades, bile acids have been shown to play a role in glucose, lipid, and energy metabolism [159]. The modulation effects of bile acids on several metabolic pathways are mainly via binding to several intracellular nuclear receptors, including farnesoid X receptor (FXR), pregnane X receptor (PXR), and cell surface G protein-coupled receptors (GPCRs) ([160] and references therein). In this regard, metformin showed an inhibitory effect on the bile acid resorption, resulting in increased exposure of the gut to bile acids [92,161,162,163]. Napolitano et al. [55] demonstrated the effect of metformin on bile acid in a clinical trial in T2DM patients. Extended exposure to bile acid might allow bile acids to bind to the intestinal FXR. Thus, the glucose-modulating effect of metformin via bile acids seems to be related to the FXR signaling. However, the glucose-modulating effect mediated by FXR remains controversial. There is some evidence that inactivation of FXR results in better glucose control and increased GLP-1 secretion [164,165,166]. For example, FXR-deficient mice exhibit increased GLP-1 expression and improved glucose metabolism [164]. In contrast to these results, some studies suggested that activation of FXR via FXR agonists improves glucose tolerance and insulin sensitivity [167,168,169,170,171]. Thus, the glucose-modulating effect of metformin via bile acid circulation has not yet been clarified. Recently, a study revealed that metformin acts on the B. fragilis-glycoursodeoxycholic acid (GUDCA)-intestinal FXR axis, improving hyperglycemia [59]. GUDCA, a conjugated bile acid, is deconjugated by the gut microbiome and is demonstrated to be an FXR antagonist. Sun et al. [59] revealed that metformin inhibited the deconjugation of GUDCA through the activity of the bile salt hydrolase of B. fragilis, resulting in an increased GUDCA concentration. This result is consistent with the correlation between GUDCA levels in stool and the presence of B. fragilis. Additionally, the abundance of Lactobacillus sanfrancisensis, contained in the genus Lactobacillus known to affect intestinal FXR signaling, was increased in the metformin-treated HFD-fed mice [80].
Taken together, metformin has a role in modulating glucose homeostasis via the regulation of the bile acid circulation. Conflict in the function of FXR in glucose homeostasis might be due to different agonists and antagonists for FXR (e.g., intestinal FXR agonist or whole-body FXR agonist) [160]. Furthermore, bile acid pools in mice and humans are known to be quite different and might have a conflicting role in FXR. As a result, further studies could be conducted by considering these confounding factors.

4. Relationships between Metformin and Gut Microbiome in Human Studies

The glucose-modulating effect of metformin on the gut microbiome has been evaluated in various clinical trials. The first clinical study that observed the relationship between metformin and the gut microbiome was conducted as an open-label, single-group study in T2DM patients [55]. In this study, they demonstrated alterations in the composition of the gut microbiome, glucose hormone, glucose-related parameters, and bile acid concentration in feces. A similar tendency was observed in the present study, despite minor differences in the gut microbiome composition (Table 1).
First, at the phylum level, the alterations in the abundance of Firmicutes and Bacteroidetes were remarkable on comparing visits 3 (non-treatment) and 4 (metformin treatment). Although there were differences among subjects, the abundance of Firmicutes was commonly increased, whereas that of Bacteroidetes was decreased after metformin treatment. This result is in line with the previous finding that the Firmicutes/Bacteroidetes ratios were considered a predictor for metabolic disease such as T2DM or obesity in several human studies [30,172,173]. The Firmicutes/Bacteroidetes ratios were decreased in the T2DM patients, and this phenomenon was recovered by metformin treatment in several clinical studies [55,56]. In contrast to these results, some studies did not show an alteration in the ratio of Firmicutes to Bacteroidetes [60]. Inconsistencies among studies could be considered for the following reasons. The phyla Firmicutes and Bacteroidetes are the most abundant bacteria in the human gut and include a large number of bacterial species. Thus, a comparison of the Firmicutes and Bacteroidetes ratio is considered too simple to evaluate metabolic disease or improvement. In addition, the difference might be attributed to the compositional difference between the stool and biopsy specimens. Clinical studies in this review used fecal samples to analyze the gut microbiome, but previous studies have shown differences in the microbial compositions of biopsy and fecal samples [42,174]. In particular, the mucosa-associated microbiota, to which the phylum Firmicutes is enriched, exhibited compositional differences in biopsies derived from colon and stool samples [175,176]. Thus, Hollister et al. [174] suggested biopsy or surgical specimens for the evaluation of mucosa-associated microbiota. For these reasons, further investigations require the validity of the Firmicutes/Bacteroidetes ratio as a relevant marker for metabolic diseases. At the genus level, it is noteworthy that Escherichia, including Escherichia/Shigella and Escherichia coli, exhibited a significant increase in T2DM patients upon metformin treatment. An increase in the abundance of Escherichia/Shigella upon metformin treatment was also observed in the other clinical trials including healthy volunteers [29,31,56,60,61]. Forslund et al. [31] suggested that metformin administration creates a competitive environment for Escherichia coli using nitrate or other energy sources, resulting in changes in the abundance of the gut microbiome [177]. Wu et al. [56] also demonstrated a change in the abundance of E. coli as an indirect effect of metformin treatment in the in vitro gut simulation. Elbere et al. [60] demonstrated that the abundance of Escherichia/Shigella before metformin treatment is associated with side effects. In this study, the increased presence of Escherichia/Shigella showed mild and severe side effects; however, this level was lower than the detection limit in the no-side-effect group. Thus, increased abundance of Escherichia was considered as a marker for the gastrointestinal side effects of metformin. Forslund et al. [31] suggested that side effects derived from Escherichia are due to an increase in lipopolysaccharide synthesis or sulfate metabolism potential, known to contribute to intestinal bloating [31,178,179,180,181].
In contrast, the abundance of Intestinibacter spp. decreased in T2DM patients treated with metformin in several clinical studies [31,56,61]. Until now, the role of Intestinibacter is still unclear, Forslund et al. [31] suggested that Intestinibacter showed resistance to oxidative stress and degradation of fucose, indicating indirect mucus degradation through analysis of SEED (http://pubseed.theseed.org/, accessed on 30 March 2021) [182] and gut microbial modules (GMM) functional annotations.
In addition, A. muciniphila, which is positively correlated with metformin treatment, showed a less clear link in human studies. Although Wu et al. [56] demonstrated an increase in A. muciniphila in the in vitro pure cultures, there was no correlation between the abundance of A. muciniphila and % hemoglobin A1c. Furthermore, clinical studies in healthy volunteers showed no change in the abundance of A. muciniphila when they were treated with metformin [60,61]. The reasons for these differences might be considered to be affected by factors dependent on individuals, such as fibers [183], polyphenol availability [184,185], immune response [186,187], and age [188,189]. Thus, it might be difficult to conclude the role of A. muciniphila in humans as a major contributor to the anti-diabetic effect of metformin, although improvements in the metabolic parameters were observed in the A. muciniphila-treated human studies.
From the perspective of biochemical alterations upon metformin treatment, there were some differences in the bile acid and SCFA concentrations in the feces. They found that metformin exposure increased the excretion of bile acid in feces, consistent with the inhibitory effect of metformin on the resorption of bile acids [161,162,163]. In addition, the abundance of Firmicutes and Bacteroidetes correlated with the bile acid concentration and gut peptide, suggesting that metformin indirectly regulates the secretion of gut hormones via bile acid metabolism. Increased SCFA concentration in feces or an increase in the abundance of SCFA-producing bacteria has been observed in human studies [31,56,57,58]. In particular, Wu et al. [56] only demonstrated that the concentration of SCFA in fecal samples, resulting in formation of butyrate and propionate, substantially increased on metformin treatment. This result is consistent with animal studies that showed that metformin increases SCFA-producing bacteria [88,89,90,91,109,110]. Thus, these clinical results support the hypothesis that metformin exerts beneficial effects via bile acids and SCFAs.
The clinical studies discussed in this review exhibited differences among studies, including observed taxonomic groups in metformin treatment and diversity in abundance. As far as diversity is concerned, only a few subjects were engaged in the clinical study, resulting in no statistical difference in the diversity of the gut microbiome. This issue has been inconsistent in clinical trials (Table 1). Forslund et al. [31] conducted a meta-analysis of metagenomic data from Swedish, Danish, and Chinese individuals. In this study, gut microbiome was less rich T2DM patients without metformin treatment; this richness slightly recovered, almost as much as that in the control group, in T2DM patients on metformin treatment [31]. The diversity was also shown to decrease in the Chinese T2DM patients [79], which was consistent with the results from the study by Forslund et al. [31].
These differences might be derived from the dosage, study duration, disease state, race differences, and sample size. Thus, to elucidate the anti-diabetic effect of metformin via modulation of the gut microbiome, clinical studies in ethnic-controlled environments or comparisons among ethnicities are required. Indeed, clinical studies in various populations have been conducted at ClinicalTrial.gov (assessed on 30 March 2021) (Table 3). Most of the research to date has revealed taxonomic groups in the gut at the genus level, and not at the species level, due to technical limitations. To counter this limitation, recent studies introduced a gut microbiome analysis method to make a possible profile at the species level [190,191,192]. In the future, these methods to analyze the gut microbiome could help clarify the relationship between metformin and the gut microbiome.

5. Perspective and Conclusions

Metformin, the first-line medicine for T2DM, has been investigated to elucidate its antidiabetic effects. In the recent decade, with progress in metagenomic technology, the role of the gut microbiome in host metabolism has been highlighted. Several studies have demonstrated that some medicines alter the composition of the gut microbiome, and this phenomenon might be considered as one of the mechanisms for treatment. In this regard, some scientists have also investigated the relationship between metformin and the gut microbiome. In this review, we focused on the current knowledge about the glucose-modulating effect of metformin on the gut microbiome. Taken together, metformin might affect the intestinal microbiome via the modulation of inflammation, gut permeability, glucose homeostasis, and abundance of SCFA-producing bacteria. However, it is still not clear how metformin modulates glucose homeostasis via the gut microbiota. Hence, elucidation of the mechanism to treat T2DM with intestinal microbiota remains a challenge for future research. In addition, without metformin, the composition of intestinal microbiota is affected by several factors, including genetics, sex, foods, lifestyle, and other medications [193,194,195]. Thus, to fully elucidate the mechanism, these confounding factors must be taken into account to determine the sole effects of metformin on the gut microbiota. However, control of the interventions is quite difficult in clinical studies. Furthermore, fecal microbiome transplantation could be recommended to validate the mechanism of action via gut microbiome-based Koch’s postulates [89,196]. However, it is difficult to conduct fecal microbiome transplantation to validate the mechanism of action via the gut microbiome in clinical settings. In addition, most of the studies dealt with within this review conducted functional annotation, categorizing microbial functions at the community level; however, it is difficult to suggest a mechanistic explanation for how these functions arise [197,198,199]. In this context, computational methods have been used as supportive tools to help elucidate the mechanism of action, and several experiments could be supportive to validate the hypothesis. Pryor et al. [98] suggested a notable approach to identify drug-nutrient interactions, combined with the in silico microbial modeling. Additionally, the results from the suggested methodology are consistent with those of other human studies [31,56,98]. In addition, Rosario et al. [122] showed the contribution of four bacteria (Escherichia spp., Akkermansia muciniphila, Intestinibacter bartlettii, and Subdoligranulum variable) in the physiology of metformin-treated T2DM patients through genome-scale models, and this study was in line with the previous observations [200,201]. Recent studies have demonstrated the drug-microbiome-host relationship via various in silico studies [122,202,203]. Hence, combined with computational methods and experimental methods, it might be helpful to understand the mechanism of action of metformin on the gut microbiome.
Understanding how metformin modulates glucose metabolism through gut microbiota may be helpful for patients with T2DM who fail upon metformin treatment, and it is possible to inform dietary guidelines to maximize the therapeutic effects, such as using probiotic products and reducing the gastrointestinal side effects [38,98,204].

Author Contributions

Conceptualization, C.B.L., U.M.J. and S.K.B.; investigation, C.B.L., S.U.C. and S.J.J.; data curation, C.B.L., S.U.C. and S.J.J.; writing—original draft preparation, C.B.L.; writing—review and editing, U.M.J. and S.K.B.; supervision, S.K.B. and funding acquisition, S.K.B. All authors have read and agreed to the published version of the manuscript.

Funding

This study was supported by a grant of Basic Science Research Program through the National Research Foundation of Korea, funded by the Ministry of Education (2018R1A6A1A03025108), Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health & Welfare (HF20C0002), and Research Fund of The Catholic University of Korea (2020).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Acknowledgments

The authors thank Su Been Lee for her technical graphics support.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Foretz, M.; Guigas, B.; Bertrand, L.; Pollak, M.; Viollet, B. Metformin: From mechanisms of action to therapies. Cell Metab. 2014, 20, 953–966. [Google Scholar] [CrossRef] [Green Version]
  2. Andujar-Plata, P.; Pi-Sunyer, X.; Laferrere, B. Metformin effects revisited. Diabetes Res. Clin. Pract. 2012, 95, 1–9. [Google Scholar] [CrossRef] [Green Version]
  3. Rena, G.; Pearson, E.R.; Sakamoto, K. Molecular mechanism of action of metformin: Old or new insights? Diabetologia 2013, 56, 1898–1906. [Google Scholar] [CrossRef] [Green Version]
  4. Rojas, L.B.; Gomes, M.B. Metformin: An old but still the best treatment for type 2 diabetes. Diabetol. Metab. Syndr. 2013, 5, 6. [Google Scholar] [CrossRef] [Green Version]
  5. Viollet, B.; Guigas, B.; Sanz Garcia, N.; Leclerc, J.; Foretz, M.; Andreelli, F. Cellular and molecular mechanisms of metformin: An overview. Clin. Sci. 2012, 122, 253–270. [Google Scholar] [CrossRef] [Green Version]
  6. Graham, G.G.; Punt, J.; Arora, M.; Day, R.O.; Doogue, M.P.; Duong, J.K.; Furlong, T.J.; Greenfield, J.R.; Greenup, L.C.; Kirkpatrick, C.M.; et al. Clinical pharmacokinetics of metformin. Clin. Pharmacokinet. 2011, 50, 81–98. [Google Scholar] [CrossRef]
  7. Beckmann, R. [Absorption, distribution in the organism and elimination of metformin]. Diabetologia 1969, 5, 318–324. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  8. Wilcock, C.; Wyre, N.D.; Bailey, C.J. Subcellular distribution of metformin in rat liver. J. Pharm. Pharmacol. 1991, 43, 442–444. [Google Scholar] [CrossRef] [PubMed]
  9. Rena, G.; Hardie, D.G.; Pearson, E.R. The mechanisms of action of metformin. Diabetologia 2017, 60, 1577–1585. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  10. Wang, D.S.; Jonker, J.W.; Kato, Y.; Kusuhara, H.; Schinkel, A.H.; Sugiyama, Y. Involvement of organic cation transporter 1 in hepatic and intestinal distribution of metformin. J. Pharmacol. Exp. Ther. 2002, 302, 510–515. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  11. Shu, Y.; Sheardown, S.A.; Brown, C.; Owen, R.P.; Zhang, S.; Castro, R.A.; Ianculescu, A.G.; Yue, L.; Lo, J.C.; Burchard, E.G.; et al. Effect of genetic variation in the organic cation transporter 1 (oct1) on metformin action. J. Clin. Investig. 2007, 117, 1422–1431. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  12. Natali, A.; Ferrannini, E. Effects of metformin and thiazolidinediones on suppression of hepatic glucose production and stimulation of glucose uptake in type 2 diabetes: A systematic review. Diabetologia 2006, 49, 434–441. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  13. Foretz, M.; Hebrard, S.; Leclerc, J.; Zarrinpashneh, E.; Soty, M.; Mithieux, G.; Sakamoto, K.; Andreelli, F.; Viollet, B. Metformin inhibits hepatic gluconeogenesis in mice independently of the lkb1/ampk pathway via a decrease in hepatic energy state. J. Clin. Investig. 2010, 120, 2355–2369. [Google Scholar] [CrossRef] [Green Version]
  14. Madiraju, A.K.; Erion, D.M.; Rahimi, Y.; Zhang, X.M.; Braddock, D.T.; Albright, R.A.; Prigaro, B.J.; Wood, J.L.; Bhanot, S.; MacDonald, M.J.; et al. Metformin suppresses gluconeogenesis by inhibiting mitochondrial glycerophosphate dehydrogenase. Nature 2014, 510, 542–546. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  15. Bonora, E.; Cigolini, M.; Bosello, O.; Zancanaro, C.; Capretti, L.; Zavaroni, I.; Coscelli, C.; Butturini, U. Lack of effect of intravenous metformin on plasma concentrations of glucose, insulin, c-peptide, glucagon and growth hormone in non-diabetic subjects. Curr. Med. Res. Opin. 1984, 9, 47–51. [Google Scholar] [CrossRef]
  16. Stepensky, D.; Friedman, M.; Raz, I.; Hoffman, A. Pharmacokinetic-pharmacodynamic analysis of the glucose-lowering effect of metformin in diabetic rats reveals first-pass pharmacodynamic effect. Drug Metab. Dispos. 2002, 30, 861–868. [Google Scholar] [CrossRef] [Green Version]
  17. Bailey, C.J.; Mynett, K.J.; Page, T. Importance of the intestine as a site of metformin-stimulated glucose utilization. Br. J. Pharmacol. 1994, 112, 671–675. [Google Scholar] [CrossRef] [Green Version]
  18. Bailey, C.J.; Wilcock, C.; Scarpello, J.H. Metformin and the intestine. Diabetologia 2008, 51, 1552–1553. [Google Scholar] [CrossRef] [Green Version]
  19. Tucker, G.T.; Casey, C.; Phillips, P.J.; Connor, H.; Ward, J.D.; Woods, H.F. Metformin kinetics in healthy subjects and in patients with diabetes mellitus. Br. J. Clin. Pharmacol. 1981, 12, 235–246. [Google Scholar] [CrossRef]
  20. Wilcock, C.; Bailey, C.J. Accumulation of metformin by tissues of the normal and diabetic mouse. Xenobiotica 1994, 24, 49–57. [Google Scholar] [CrossRef]
  21. Jensen, J.B.; Sundelin, E.I.; Jakobsen, S.; Gormsen, L.C.; Munk, O.L.; Frokiaer, J.; Jessen, N. [11c]-labeled metformin distribution in the liver and small intestine using dynamic positron emission tomography in mice demonstrates tissue-specific transporter dependency. Diabetes 2016, 65, 1724–1730. [Google Scholar] [CrossRef] [Green Version]
  22. Dujic, T.; Zhou, K.; Donnelly, L.A.; Tavendale, R.; Palmer, C.N.; Pearson, E.R. Association of organic cation transporter 1 with intolerance to metformin in type 2 diabetes: A godarts study. Diabetes 2015, 64, 1786–1793. [Google Scholar] [CrossRef] [Green Version]
  23. Buse, J.B.; DeFronzo, R.A.; Rosenstock, J.; Kim, T.; Burns, C.; Skare, S.; Baron, A.; Fineman, M. The primary glucose-lowering effect of metformin resides in the gut, not the circulation: Results from short-term pharmacokinetic and 12-week dose-ranging studies. Diabetes Care 2016, 39, 198–205. [Google Scholar] [CrossRef] [Green Version]
  24. Kho, Z.Y.; Lal, S.K. The human gut microbiome—A potential controller of wellness and disease. Front. Microbiol. 2018, 9, 1835. [Google Scholar] [CrossRef] [Green Version]
  25. Hooper, L.V.; Gordon, J.I. Commensal host-bacterial relationships in the gut. Science 2001, 292, 1115–1118. [Google Scholar] [CrossRef]
  26. Le Chatelier, E.; Nielsen, T.; Qin, J.; Prifti, E.; Hildebrand, F.; Falony, G.; Almeida, M.; Arumugam, M.; Batto, J.M.; Kennedy, S.; et al. Richness of human gut microbiome correlates with metabolic markers. Nature 2013, 500, 541–546. [Google Scholar] [CrossRef]
  27. Qin, J.; Li, Y.; Cai, Z.; Li, S.; Zhu, J.; Zhang, F.; Liang, S.; Zhang, W.; Guan, Y.; Shen, D.; et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012, 490, 55–60. [Google Scholar] [CrossRef]
  28. Sato, J.; Kanazawa, A.; Ikeda, F.; Yoshihara, T.; Goto, H.; Abe, H.; Komiya, K.; Kawaguchi, M.; Shimizu, T.; Ogihara, T.; et al. Gut dysbiosis and detection of “live gut bacteria” in blood of japanese patients with type 2 diabetes. Diabetes Care 2014, 37, 2343–2350. [Google Scholar] [CrossRef] [Green Version]
  29. Karlsson, F.H.; Tremaroli, V.; Nookaew, I.; Bergstrom, G.; Behre, C.J.; Fagerberg, B.; Nielsen, J.; Backhed, F. Gut metagenome in european women with normal, impaired and diabetic glucose control. Nature 2013, 498, 99–103. [Google Scholar] [CrossRef]
  30. Larsen, N.; Vogensen, F.K.; van den Berg, F.W.; Nielsen, D.S.; Andreasen, A.S.; Pedersen, B.K.; Al-Soud, W.A.; Sorensen, S.J.; Hansen, L.H.; Jakobsen, M. Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS ONE 2010, 5, e9085. [Google Scholar] [CrossRef]
  31. Forslund, K.; Hildebrand, F.; Nielsen, T.; Falony, G.; Le Chatelier, E.; Sunagawa, S.; Prifti, E.; Vieira-Silva, S.; Gudmundsdottir, V.; Pedersen, H.K.; et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 2015, 528, 262–266. [Google Scholar] [CrossRef] [PubMed]
  32. Zhang, X.; Shen, D.; Fang, Z.; Jie, Z.; Qiu, X.; Zhang, C.; Chen, Y.; Ji, L. Human gut microbiota changes reveal the progression of glucose intolerance. PLoS ONE 2013, 8, e71108. [Google Scholar] [CrossRef] [PubMed]
  33. Zhang, F.; Wang, M.; Yang, J.; Xu, Q.; Liang, C.; Chen, B.; Zhang, J.; Yang, Y.; Wang, H.; Shang, Y.; et al. Response of gut microbiota in type 2 diabetes to hypoglycemic agents. Endocrine 2019, 66, 485–493. [Google Scholar] [CrossRef] [PubMed]
  34. Ahmad, A.; Yang, W.; Chen, G.; Shafiq, M.; Javed, S.; Ali Zaidi, S.S.; Shahid, R.; Liu, C.; Bokhari, H. Analysis of gut microbiota of obese individuals with type 2 diabetes and healthy individuals. PLoS ONE 2019, 14, e0226372. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  35. Chavez-Carbajal, A.; Pizano-Zarate, M.L.; Hernandez-Quiroz, F.; Ortiz-Luna, G.F.; Morales-Hernandez, R.M.; De Sales-Millan, A.; Hernandez-Trejo, M.; Garcia-Vite, A.; Beltran-Lagunes, L.; Hoyo-Vadillo, C.; et al. Characterization of the gut microbiota of individuals at different t2d stages reveals a complex relationship with the host. Microorganisms 2020, 8, 94. [Google Scholar] [CrossRef] [Green Version]
  36. Gurung, M.; Li, Z.; You, H.; Rodrigues, R.; Jump, D.B.; Morgun, A.; Shulzhenko, N. Role of gut microbiota in type 2 diabetes pathophysiology. EBioMedicine 2020, 51, 102590. [Google Scholar] [CrossRef] [Green Version]
  37. Rodriguez, J.; Hiel, S.; Delzenne, N.M. Metformin: Old friend, new ways of action-implication of the gut microbiome? Curr. Opin. Clin. Nutr. Metab. Care 2018, 21, 294–301. [Google Scholar] [CrossRef]
  38. Wu, T.; Horowitz, M.; Rayner, C.K. New insights into the anti-diabetic actions of metformin: From the liver to the gut. Expert Rev. Gastroenterol. Hepatol. 2017, 11, 157–166. [Google Scholar] [CrossRef]
  39. Hur, K.Y.; Lee, M.S. New mechanisms of metformin action: Focusing on mitochondria and the gut. J. Diabetes Investig. 2015, 6, 600–609. [Google Scholar] [CrossRef]
  40. Vallianou, N.G.; Stratigou, T.; Tsagarakis, S. Metformin and gut microbiota: Their interactions and their impact on diabetes. Hormones 2019, 18, 141–144. [Google Scholar] [CrossRef]
  41. Zhang, Q.; Hu, N. Effects of metformin on the gut microbiota in obesity and type 2 diabetes mellitus. Diabetes Metab. Syndr. Obes. 2020, 13, 5003–5014. [Google Scholar] [CrossRef]
  42. Morgan, X.C.; Tickle, T.L.; Sokol, H.; Gevers, D.; Devaney, K.L.; Ward, D.V.; Reyes, J.A.; Shah, S.A.; LeLeiko, N.; Snapper, S.B.; et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 2012, 13, R79. [Google Scholar] [CrossRef] [PubMed]
  43. Turnbaugh, P.J.; Ley, R.E.; Mahowald, M.A.; Magrini, V.; Mardis, E.R.; Gordon, J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444, 1027–1031. [Google Scholar] [CrossRef] [PubMed]
  44. Turnbaugh, P.J.; Hamady, M.; Yatsunenko, T.; Cantarel, B.L.; Duncan, A.; Ley, R.E.; Sogin, M.L.; Jones, W.J.; Roe, B.A.; Affourtit, J.P.; et al. A core gut microbiome in obese and lean twins. Nature 2009, 457, 480–484. [Google Scholar] [CrossRef] [Green Version]
  45. Koliada, A.; Syzenko, G.; Moseiko, V.; Budovska, L.; Puchkov, K.; Perederiy, V.; Gavalko, Y.; Dorofeyev, A.; Romanenko, M.; Tkach, S.; et al. Association between body mass index and firmicutes/bacteroidetes ratio in an adult ukrainian population. BMC Microbiol. 2017, 17, 120. [Google Scholar] [CrossRef] [Green Version]
  46. Vrieze, A.; Van Nood, E.; Holleman, F.; Salojarvi, J.; Kootte, R.S.; Bartelsman, J.F.; Dallinga-Thie, G.M.; Ackermans, M.T.; Serlie, M.J.; Oozeer, R.; et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology 2012, 143, 913–916.e7. [Google Scholar] [CrossRef]
  47. Halawa, M.R.; El-Salam, M.A.; Mostafa, B.M.; Sallout, S.S. The gut microbiome, lactobacillus acidophilus; relation with type 2 diabetes mellitus. Curr. Diabetes Rev. 2019, 15, 480–485. [Google Scholar] [CrossRef]
  48. Zeuthen, L.H.; Christensen, H.R.; Frokiaer, H. Lactic acid bacteria inducing a weak interleukin-12 and tumor necrosis factor alpha response in human dendritic cells inhibit strongly stimulating lactic acid bacteria but act synergistically with gram-negative bacteria. Clin. Vaccine Immunol. 2006, 13, 365–375. [Google Scholar] [CrossRef] [Green Version]
  49. Cani, P.D.; Amar, J.; Iglesias, M.A.; Poggi, M.; Knauf, C.; Bastelica, D.; Neyrinck, A.M.; Fava, F.; Tuohy, K.M.; Chabo, C.; et al. Metabolic endotoxemia initiates obesity and insulin resistance. Diabetes 2007, 56, 1761–1772. [Google Scholar] [CrossRef] [Green Version]
  50. Delzenne, N.M.; Cani, P.D.; Everard, A.; Neyrinck, A.M.; Bindels, L.B. Gut microorganisms as promising targets for the management of type 2 diabetes. Diabetologia 2015, 58, 2206–2217. [Google Scholar] [CrossRef]
  51. Carvalho, B.M.; Guadagnini, D.; Tsukumo, D.M.L.; Schenka, A.A.; Latuf-Filho, P.; Vassallo, J.; Dias, J.C.; Kubota, L.T.; Carvalheira, J.B.C.; Saad, M.J.A. Modulation of gut microbiota by antibiotics improves insulin signalling in high-fat fed mice. Diabetologia 2012, 55, 2823–2834. [Google Scholar] [CrossRef]
  52. Song, M.J.; Kim, K.H.; Yoon, J.M.; Kim, J.B. Activation of toll-like receptor 4 is associated with insulin resistance in adipocytes. Biochem. Biophys. Res. Commun. 2006, 346, 739–745. [Google Scholar] [CrossRef] [PubMed]
  53. Balakumar, M.; Prabhu, D.; Sathishkumar, C.; Prabu, P.; Rokana, N.; Kumar, R.; Raghavan, S.; Soundarajan, A.; Grover, S.; Batish, V.K.; et al. Improvement in glucose tolerance and insulin sensitivity by probiotic strains of indian gut origin in high-fat diet-fed c57bl/6j mice. Eur. J. Nutr. 2018, 57, 279–295. [Google Scholar] [CrossRef] [PubMed]
  54. Panwar, H.; Rashmi, H.M.; Batish, V.K.; Grover, S. Probiotics as potential biotherapeutics in the management of type 2 diabetes—Prospects and perspectives. Diabetes Metab. Res. Rev. 2013, 29, 103–112. [Google Scholar] [CrossRef]
  55. Napolitano, A.; Miller, S.; Nicholls, A.W.; Baker, D.; Van Horn, S.; Thomas, E.; Rajpal, D.; Spivak, A.; Brown, J.R.; Nunez, D.J. Novel gut-based pharmacology of metformin in patients with type 2 diabetes mellitus. PLoS ONE 2014, 9, e100778. [Google Scholar] [CrossRef]
  56. Wu, H.; Esteve, E.; Tremaroli, V.; Khan, M.T.; Caesar, R.; Manneras-Holm, L.; Stahlman, M.; Olsson, L.M.; Serino, M.; Planas-Felix, M.; et al. Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug. Nat. Med. 2017, 23, 850–858. [Google Scholar] [CrossRef]
  57. De la Cuesta-Zuluaga, J.; Mueller, N.T.; Corrales-Agudelo, V.; Velasquez-Mejia, E.P.; Carmona, J.A.; Abad, J.M.; Escobar, J.S. Metformin is associated with higher relative abundance of mucin-degrading akkermansia muciniphila and several short-chain fatty acid-producing microbiota in the gut. Diabetes Care 2017, 40, 54–62. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  58. Huang, F.; Nilholm, C.; Roth, B.; Linninge, C.; Hoglund, P.; Nyman, M.; Ohlsson, B. Anthropometric and metabolic improvements in human type 2 diabetes after introduction of an okinawan-based nordic diet are not associated with changes in microbial diversity or scfa concentrations. Int. J. Food Sci. Nutr. 2018, 69, 729–740. [Google Scholar] [CrossRef]
  59. Sun, L.; Xie, C.; Wang, G.; Wu, Y.; Wu, Q.; Wang, X.; Liu, J.; Deng, Y.; Xia, J.; Chen, B.; et al. Gut microbiota and intestinal fxr mediate the clinical benefits of metformin. Nat. Med. 2018, 24, 1919–1929. [Google Scholar] [CrossRef]
  60. Elbere, I.; Kalnina, I.; Silamikelis, I.; Konrade, I.; Zaharenko, L.; Sekace, K.; Radovica-Spalvina, I.; Fridmanis, D.; Gudra, D.; Pirags, V.; et al. Association of metformin administration with gut microbiome dysbiosis in healthy volunteers. PLoS ONE 2018, 13, e0204317. [Google Scholar] [CrossRef]
  61. Bryrup, T.; Thomsen, C.W.; Kern, T.; Allin, K.H.; Brandslund, I.; Jorgensen, N.R.; Vestergaard, H.; Hansen, T.; Hansen, T.H.; Pedersen, O.; et al. Metformin-induced changes of the gut microbiota in healthy young men: Results of a non-blinded, one-armed intervention study. Diabetologia 2019, 62, 1024–1035. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  62. Lam, T.K. Neuronal regulation of homeostasis by nutrient sensing. Nat. Med. 2010, 16, 392–395. [Google Scholar] [CrossRef]
  63. Duca, F.A.; Bauer, P.V.; Hamr, S.C.; Lam, T.K. Glucoregulatory relevance of small intestinal nutrient sensing in physiology, bariatric surgery, and pharmacology. Cell Metab. 2015, 22, 367–380. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  64. Gorboulev, V.; Schurmann, A.; Vallon, V.; Kipp, H.; Jaschke, A.; Klessen, D.; Friedrich, A.; Scherneck, S.; Rieg, T.; Cunard, R.; et al. Na(+)-d-glucose cotransporter sglt1 is pivotal for intestinal glucose absorption and glucose-dependent incretin secretion. Diabetes 2012, 61, 187–196. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  65. Gribble, F.M.; Williams, L.; Simpson, A.K.; Reimann, F. A novel glucose-sensing mechanism contributing to glucagon-like peptide-1 secretion from the glutag cell line. Diabetes 2003, 52, 1147–1154. [Google Scholar] [CrossRef] [Green Version]
  66. Kuhre, R.E.; Frost, C.R.; Svendsen, B.; Holst, J.J. Molecular mechanisms of glucose-stimulated glp-1 secretion from perfused rat small intestine. Diabetes 2015, 64, 370–382. [Google Scholar] [CrossRef] [Green Version]
  67. Moriya, R.; Shirakura, T.; Ito, J.; Mashiko, S.; Seo, T. Activation of sodium-glucose cotransporter 1 ameliorates hyperglycemia by mediating incretin secretion in mice. Am. J. Physiol. Endocrinol. Metab. 2009, 297, E1358–E1365. [Google Scholar] [CrossRef] [Green Version]
  68. Parker, H.E.; Adriaenssens, A.; Rogers, G.; Richards, P.; Koepsell, H.; Reimann, F.; Gribble, F.M. Predominant role of active versus facilitative glucose transport for glucagon-like peptide-1 secretion. Diabetologia 2012, 55, 2445–2455. [Google Scholar] [CrossRef] [Green Version]
  69. Maida, A.; Lamont, B.J.; Cao, X.; Drucker, D.J. Metformin regulates the incretin receptor axis via a pathway dependent on peroxisome proliferator-activated receptor-alpha in mice. Diabetologia 2011, 54, 339–349. [Google Scholar] [CrossRef]
  70. Vardarli, I.; Arndt, E.; Deacon, C.F.; Holst, J.J.; Nauck, M.A. Effects of sitagliptin and metformin treatment on incretin hormone and insulin secretory responses to oral and “isoglycemic” intravenous glucose. Diabetes 2014, 63, 663–674. [Google Scholar] [CrossRef] [Green Version]
  71. Duca, F.A.; Cote, C.D.; Rasmussen, B.A.; Zadeh-Tahmasebi, M.; Rutter, G.A.; Filippi, B.M.; Lam, T.K. Metformin activates a duodenal ampk-dependent pathway to lower hepatic glucose production in rats. Nat. Med. 2015, 21, 506–511. [Google Scholar] [CrossRef]
  72. Lenzen, S.; Lortz, S.; Tiedge, M. Effect of metformin on sglt1, glut2, and glut5 hexose transporter gene expression in small intestine from rats. Biochem. Pharmacol. 1996, 51, 893–896. [Google Scholar] [CrossRef]
  73. El Aidy, S.; Merrifield, C.A.; Derrien, M.; van Baarlen, P.; Hooiveld, G.; Levenez, F.; Dore, J.; Dekker, J.; Holmes, E.; Claus, S.P.; et al. The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation. Gut 2013, 62, 1306–1314. [Google Scholar] [CrossRef] [PubMed]
  74. Ejtahed, H.S.; Mohtadi-Nia, J.; Homayouni-Rad, A.; Niafar, M.; Asghari-Jafarabadi, M.; Mofid, V. Probiotic yogurt improves antioxidant status in type 2 diabetic patients. Nutrition 2012, 28, 539–543. [Google Scholar] [CrossRef] [PubMed]
  75. Yadav, H.; Jain, S.; Sinha, P.R. Antidiabetic effect of probiotic dahi containing lactobacillus acidophilus and lactobacillus casei in high fructose fed rats. Nutrition 2007, 23, 62–68. [Google Scholar] [CrossRef] [PubMed]
  76. Bauer, P.V.; Duca, F.A.; Waise, T.M.Z.; Rasmussen, B.A.; Abraham, M.A.; Dranse, H.J.; Puri, A.; O’Brien, C.A.; Lam, T.K.T. Metformin alters upper small intestinal microbiota that impact a glucose-sglt1-sensing glucoregulatory pathway. Cell Metab. 2018, 27, 101–117.e105. [Google Scholar] [CrossRef]
  77. Rooj, A.K.; Kimura, Y.; Buddington, R.K. Metabolites produced by probiotic lactobacilli rapidly increase glucose uptake by caco-2 cells. BMC Microbiol. 2010, 10, 16. [Google Scholar] [CrossRef] [Green Version]
  78. Fredborg, M.; Theil, P.K.; Jensen, B.B.; Purup, S. G protein-coupled receptor120 (gpr120) transcription in intestinal epithelial cells is significantly affected by bacteria belonging to the bacteroides, proteobacteria, and firmicutes phyla. J. Anim. Sci. 2012, 90 (Suppl. 4), 10–12. [Google Scholar] [CrossRef]
  79. Tanaka, T.; Katsuma, S.; Adachi, T.; Koshimizu, T.A.; Hirasawa, A.; Tsujimoto, G. Free fatty acids induce cholecystokinin secretion through gpr120. Naunyn-Schmiedeberg’s Arch. Pharmacol. 2008, 377, 523–527. [Google Scholar] [CrossRef]
  80. Bauer, P.V.; Duca, F.A.; Waise, T.M.Z.; Dranse, H.J.; Rasmussen, B.A.; Puri, A.; Rasti, M.; O’Brien, C.A.; Lam, T.K.T. Lactobacillus gasseri in the upper small intestine impacts an acsl3-dependent fatty acid-sensing pathway regulating whole-body glucose homeostasis. Cell Metab. 2018, 27, 572–587.e6. [Google Scholar] [CrossRef] [Green Version]
  81. Den Besten, G.; van Eunen, K.; Groen, A.K.; Venema, K.; Reijngoud, D.J.; Bakker, B.M. The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism. J. Lipid Res. 2013, 54, 2325–2340. [Google Scholar] [CrossRef] [Green Version]
  82. Karaki, S.; Tazoe, H.; Hayashi, H.; Kashiwabara, H.; Tooyama, K.; Suzuki, Y.; Kuwahara, A. Expression of the short-chain fatty acid receptor, gpr43, in the human colon. J. Mol. Histol. 2008, 39, 135–142. [Google Scholar] [CrossRef]
  83. Karaki, S.; Mitsui, R.; Hayashi, H.; Kato, I.; Sugiya, H.; Iwanaga, T.; Furness, J.B.; Kuwahara, A. Short-chain fatty acid receptor, gpr43, is expressed by enteroendocrine cells and mucosal mast cells in rat intestine. Cell Tissue Res. 2006, 324, 353–360. [Google Scholar] [CrossRef] [PubMed]
  84. Tolhurst, G.; Heffron, H.; Lam, Y.S.; Parker, H.E.; Habib, A.M.; Diakogiannaki, E.; Cameron, J.; Grosse, J.; Reimann, F.; Gribble, F.M. Short-chain fatty acids stimulate glucagon-like peptide-1 secretion via the g-protein-coupled receptor ffar2. Diabetes 2012, 61, 364–371. [Google Scholar] [CrossRef] [Green Version]
  85. Cherbut, C.; Ferrier, L.; Roze, C.; Anini, Y.; Blottiere, H.; Lecannu, G.; Galmiche, J.P. Short-chain fatty acids modify colonic motility through nerves and polypeptide yy release in the rat. Am. J. Physiol. 1998, 275, G1415–G1422. [Google Scholar] [CrossRef] [PubMed]
  86. Holz, G.G., IV; Kuhtreiber, W.M.; Habener, J.F. Pancreatic beta-cells are rendered glucose-competent by the insulinotropic hormone glucagon-like peptide-1(7-37). Nature 1993, 361, 362–365. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  87. Fan, Y.; Pedersen, O. Gut microbiota in human metabolic health and disease. Nat. Rev. Microbiol. 2021, 19, 55–71. [Google Scholar] [CrossRef]
  88. Lee, H.; Ko, G. Effect of metformin on metabolic improvement and gut microbiota. Appl. Environ. Microbiol. 2014, 80, 5935–5943. [Google Scholar] [CrossRef] [Green Version]
  89. Lee, H.; Lee, Y.; Kim, J.; An, J.; Lee, S.; Kong, H.; Song, Y.; Lee, C.K.; Kim, K. Modulation of the gut microbiota by metformin improves metabolic profiles in aged obese mice. Gut Microbes 2018, 9, 155–165. [Google Scholar] [CrossRef] [Green Version]
  90. Ryan, P.M.; Patterson, E.; Carafa, I.; Mandal, R.; Wishart, D.S.; Dinan, T.G.; Cryan, J.F.; Tuohy, K.M.; Stanton, C.; Ross, R.P. Metformin and dipeptidyl peptidase-4 inhibitor differentially modulate the intestinal microbiota and plasma metabolome of metabolically dysfunctional mice. Can. J. Diabetes 2020, 44, 146–155.e2. [Google Scholar] [CrossRef]
  91. Zhang, W.; Xu, J.H.; Yu, T.; Chen, Q.K. Effects of berberine and metformin on intestinal inflammation and gut microbiome composition in db/db mice. Biomed. Pharmacother. 2019, 118, 109131. [Google Scholar] [CrossRef] [PubMed]
  92. Ahmadi, S.; Razazan, A.; Nagpal, R.; Jain, S.; Wang, B.; Mishra, S.P.; Wang, S.; Justice, J.; Ding, J.; McClain, D.A.; et al. Metformin reduces aging-related leaky gut and improves cognitive function by beneficially modulating gut microbiome/goblet cell/mucin axis. J. Gerontol. A Biol. Sci. Med. Sci. 2020, 75, e9–e21. [Google Scholar] [CrossRef] [PubMed]
  93. Liu, G.; Liang, L.; Yu, G.; Li, Q. Pumpkin polysaccharide modifies the gut microbiota during alleviation of type 2 diabetes in rats. Int. J. Biol. Macromol. 2018, 115, 711–717. [Google Scholar] [CrossRef]
  94. Liu, Y.; Wang, C.; Li, J.; Li, T.; Zhang, Y.; Liang, Y.; Mei, Y. Phellinus linteus polysaccharide extract improves insulin resistance by regulating gut microbiota composition. FASEB J. 2020, 34, 1065–1078. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  95. Macfarlane, S.; Macfarlane, G.T. Regulation of short-chain fatty acid production. Proc. Nutr. Soc. 2003, 62, 67–72. [Google Scholar] [CrossRef]
  96. Rios-Covian, D.; Arboleya, S.; Hernandez-Barranco, A.M.; Alvarez-Buylla, J.R.; Ruas-Madiedo, P.; Gueimonde, M.; de los Reyes-Gavilan, C.G. Interactions between bifidobacterium and bacteroides species in cofermentations are affected by carbon sources, including exopolysaccharides produced by bifidobacteria. Appl. Environ. Microbiol. 2013, 79, 7518–7524. [Google Scholar] [CrossRef] [Green Version]
  97. Hao, Z.; Li, L.; Ning, Z.; Zhang, X.; Mayne, J.; Cheng, K.; Walker, K.; Liu, H.; Figeys, D. Metaproteomics reveals growth phase-dependent responses of an in vitro gut microbiota to metformin. J. Am. Soc. Mass Spectrom. 2020, 31, 1448–1458. [Google Scholar] [CrossRef]
  98. Pryor, R.; Norvaisas, P.; Marinos, G.; Best, L.; Thingholm, L.B.; Quintaneiro, L.M.; De Haes, W.; Esser, D.; Waschina, S.; Lujan, C.; et al. Host-microbe-drug-nutrient screen identifies bacterial effectors of metformin therapy. Cell 2019, 178, 1299–1312.e29. [Google Scholar] [CrossRef] [Green Version]
  99. Brandt, A.; Hernandez-Arriaga, A.; Kehm, R.; Sanchez, V.; Jin, C.J.; Nier, A.; Baumann, A.; Camarinha-Silva, A.; Bergheim, I. Metformin attenuates the onset of non-alcoholic fatty liver disease and affects intestinal microbiota and barrier in small intestine. Sci. Rep. 2019, 9, 6668. [Google Scholar] [CrossRef] [Green Version]
  100. Wankhade, U.D.; Zhong, Y.; Lazarenko, O.P.; Chintapalli, S.V.; Piccolo, B.D.; Chen, J.R.; Shankar, K. Sex-specific changes in gut microbiome composition following blueberry consumption in c57bl/6j mice. Nutrients 2019, 11, 313. [Google Scholar] [CrossRef] [Green Version]
  101. Caslin, B.; Maguire, C.; Karmakar, A.; Mohler, K.; Wylie, D.; Melamed, E. Alcohol shifts gut microbial networks and ameliorates a murine model of neuroinflammation in a sex-specific pattern. Proc. Natl. Acad. Sci. USA 2019, 116, 25808–25815. [Google Scholar] [CrossRef]
  102. Geer, E.B.; Shen, W. Gender differences in insulin resistance, body composition, and energy balance. Gend. Med. 2009, 6 (Suppl. 1), 60–75. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  103. Wu, B.N.; O’Sullivan, A.J. Sex differences in energy metabolism need to be considered with lifestyle modifications in humans. J. Nutr. Metab. 2011, 2011, 391809. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  104. Kornman, K.S.; Loesche, W.J. Effects of estradiol and progesterone on bacteroides melaninogenicus and bacteroides gingivalis. Infect. Immun. 1982, 35, 256–263. [Google Scholar] [CrossRef] [Green Version]
  105. Gao, Z.; Yin, J.; Zhang, J.; Ward, R.E.; Martin, R.J.; Lefevre, M.; Cefalu, W.T.; Ye, J. Butyrate improves insulin sensitivity and increases energy expenditure in mice. Diabetes 2009, 58, 1509–1517. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  106. Lin, H.V.; Frassetto, A.; Kowalik, E.J., Jr.; Nawrocki, A.R.; Lu, M.M.; Kosinski, J.R.; Hubert, J.A.; Szeto, D.; Yao, X.; Forrest, G.; et al. Butyrate and propionate protect against diet-induced obesity and regulate gut hormones via free fatty acid receptor 3-independent mechanisms. PLoS ONE 2012, 7, e35240. [Google Scholar] [CrossRef] [PubMed]
  107. Li, X.; Wang, E.; Yin, B.; Fang, D.; Chen, P.; Wang, G.; Zhao, J.; Zhang, H.; Chen, W. Effects of lactobacillus casei ccfm419 on insulin resistance and gut microbiota in type 2 diabetic mice. Benef. Microbes 2017, 8, 421–432. [Google Scholar] [CrossRef]
  108. Wang, K.; Liao, M.; Zhou, N.; Bao, L.; Ma, K.; Zheng, Z.; Wang, Y.; Liu, C.; Wang, W.; Wang, J.; et al. Parabacteroides distasonis alleviates obesity and metabolic dysfunctions via production of succinate and secondary bile acids. Cell Rep. 2019, 26, 222–235.e5. [Google Scholar] [CrossRef] [Green Version]
  109. Zheng, J.; Li, H.; Zhang, X.; Jiang, M.; Luo, C.; Lu, Z.; Xu, Z.; Shi, J. Prebiotic mannan-oligosaccharides augment the hypoglycemic effects of metformin in correlation with modulating gut microbiota. J. Agric. Food Chem. 2018, 66, 5821–5831. [Google Scholar] [CrossRef]
  110. Shin, N.R.; Lee, J.C.; Lee, H.Y.; Kim, M.S.; Whon, T.W.; Lee, M.S.; Bae, J.W. An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut 2014, 63, 727–735. [Google Scholar] [CrossRef] [Green Version]
  111. Cani, P.D.; Bibiloni, R.; Knauf, C.; Waget, A.; Neyrinck, A.M.; Delzenne, N.M.; Burcelin, R. Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice. Diabetes 2008, 57, 1470–1481. [Google Scholar] [CrossRef] [Green Version]
  112. Cani, P.D.; Neyrinck, A.M.; Fava, F.; Knauf, C.; Burcelin, R.G.; Tuohy, K.M.; Gibson, G.R.; Delzenne, N.M. Selective increases of bifidobacteria in gut microflora improve high-fat-diet-induced diabetes in mice through a mechanism associated with endotoxaemia. Diabetologia 2007, 50, 2374–2383. [Google Scholar] [CrossRef] [Green Version]
  113. Tanti, J.F.; Gual, P.; Gremeaux, T.; Gonzalez, T.; Barres, R.; Le Marchand-Brustel, Y. Alteration in insulin action: Role of irs-1 serine phosphorylation in the retroregulation of insulin signalling. Ann. Endocrinol. 2004, 65, 43–48. [Google Scholar] [CrossRef]
  114. Macchione, I.G.; Lopetuso, L.R.; Ianiro, G.; Napoli, M.; Gibiino, G.; Rizzatti, G.; Petito, V.; Gasbarrini, A.; Scaldaferri, F. Akkermansia muciniphila: Key player in metabolic and gastrointestinal disorders. Eur. Rev. Med. Pharmacol. Sci. 2019, 23, 8075–8083. [Google Scholar] [PubMed]
  115. Kim, Y.S.; Ho, S.B. Intestinal goblet cells and mucins in health and disease: Recent insights and progress. Curr. Gastroenterol. Rep. 2010, 12, 319–330. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  116. Johansson, M.E.; Larsson, J.M.; Hansson, G.C. The two mucus layers of colon are organized by the muc2 mucin, whereas the outer layer is a legislator of host-microbial interactions. Proc. Natl. Acad. Sci. USA 2011, 108 (Suppl. 1), 4659–4665. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  117. Amar, J.; Chabo, C.; Waget, A.; Klopp, P.; Vachoux, C.; Bermudez-Humaran, L.G.; Smirnova, N.; Berge, M.; Sulpice, T.; Lahtinen, S.; et al. Intestinal mucosal adherence and translocation of commensal bacteria at the early onset of type 2 diabetes: Molecular mechanisms and probiotic treatment. EMBO Mol. Med. 2011, 3, 559–572. [Google Scholar] [CrossRef]
  118. Everard, A.; Belzer, C.; Geurts, L.; Ouwerkerk, J.P.; Druart, C.; Bindels, L.B.; Guiot, Y.; Derrien, M.; Muccioli, G.G.; Delzenne, N.M.; et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc. Natl. Acad. Sci. USA 2013, 110, 9066–9071. [Google Scholar] [CrossRef] [Green Version]
  119. Belzer, C.; de Vos, W.M. Microbes inside—From diversity to function: The case of Akkermansia. ISME J. 2012, 6, 1449–1458. [Google Scholar] [CrossRef]
  120. Van Passel, M.W.; Kant, R.; Zoetendal, E.G.; Plugge, C.M.; Derrien, M.; Malfatti, S.A.; Chain, P.S.; Woyke, T.; Palva, A.; de Vos, W.M.; et al. The genome of akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes. PLoS ONE 2011, 6, e16876. [Google Scholar] [CrossRef] [Green Version]
  121. Ma, W.; Chen, J.; Meng, Y.; Yang, J.; Cui, Q.; Zhou, Y. Metformin alters gut microbiota of healthy mice: Implication for its potential role in gut microbiota homeostasis. Front. Microbiol. 2018, 9, 1336. [Google Scholar] [CrossRef] [Green Version]
  122. Rosario, D.; Benfeitas, R.; Bidkhori, G.; Zhang, C.; Uhlen, M.; Shoaie, S.; Mardinoglu, A. Understanding the representative gut microbiota dysbiosis in metformin-treated type 2 diabetes patients using genome-scale metabolic modeling. Front. Physiol. 2018, 9, 775. [Google Scholar] [CrossRef]
  123. Zhang, X.; Zhao, Y.; Xu, J.; Xue, Z.; Zhang, M.; Pang, X.; Zhang, X.; Zhao, L. Modulation of gut microbiota by berberine and metformin during the treatment of high-fat diet-induced obesity in rats. Sci. Rep. 2015, 5, 14405. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  124. Cui, H.X.; Zhang, L.S.; Luo, Y.; Yuan, K.; Huang, Z.Y.; Guo, Y. A purified anthraquinone-glycoside preparation from rhubarb ameliorates type 2 diabetes mellitus by modulating the gut microbiota and reducing inflammation. Front. Microbiol. 2019, 10, 1423. [Google Scholar] [CrossRef] [PubMed]
  125. Ji, S.; Wang, L.; Li, L. Effect of metformin on short-term high-fat diet-induced weight gain and anxiety-like behavior and the gut microbiota. Front. Endocrinol. 2019, 10, 704. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  126. Chen, L.C.; Fan, Z.Y.; Wang, H.Y.; Wen, D.C.; Zhang, S.Y. Effect of polysaccharides from adlay seed on anti-diabetic and gut microbiota. Food Funct. 2019, 10, 4372–4380. [Google Scholar] [CrossRef]
  127. Wang, J.H.; Bose, S.; Shin, N.R.; Chin, Y.W.; Choi, Y.H.; Kim, H. Pharmaceutical impact of houttuynia cordata and metformin combination on high-fat-diet-induced metabolic disorders: Link to intestinal microbiota and metabolic endotoxemia. Front. Endocrinol. 2018, 9, 620. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  128. Liu, G.; Bei, J.; Liang, L.; Yu, G.; Li, L.; Li, Q. Stachyose improves inflammation through modulating gut microbiota of high-fat diet/streptozotocin-induced type 2 diabetes in rats. Mol. Nutr. Food Res. 2018, 62, e1700954. [Google Scholar] [CrossRef]
  129. Khat-Udomkiri, N.; Toejing, P.; Sirilun, S.; Chaiyasut, C.; Lailerd, N. Antihyperglycemic effect of rice husk derived xylooligosaccharides in high-fat diet and low-dose streptozotocin-induced type 2 diabetic rat model. Food Sci. Nutr. 2020, 8, 428–444. [Google Scholar] [CrossRef]
  130. Wang, J.H.; Bose, S.; Lim, S.K.; Ansari, A.; Chin, Y.W.; Choi, H.S.; Kim, H. Houttuynia cordata facilitates metformin on ameliorating insulin resistance associated with gut microbiota alteration in oletf rats. Genes 2017, 8, 239. [Google Scholar] [CrossRef]
  131. Zhang, M.; Feng, R.; Yang, M.; Qian, C.; Wang, Z.; Liu, W.; Ma, J. Effects of metformin, acarbose, and sitagliptin monotherapy on gut microbiota in zucker diabetic fatty rats. BMJ Open Diabetes Res. Care 2019, 7, e000717. [Google Scholar] [CrossRef]
  132. Chelakkot, C.; Choi, Y.; Kim, D.K.; Park, H.T.; Ghim, J.; Kwon, Y.; Jeon, J.; Kim, M.S.; Jee, Y.K.; Gho, Y.S.; et al. Akkermansia muciniphila-derived extracellular vesicles influence gut permeability through the regulation of tight junctions. Exp. Mol. Med. 2018, 50, e450. [Google Scholar] [CrossRef]
  133. Derrien, M.; Collado, M.C.; Ben-Amor, K.; Salminen, S.; de Vos, W.M. The mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract. Appl. Environ. Microbiol. 2008, 74, 1646–1648. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  134. Plovier, H.; Everard, A.; Druart, C.; Depommier, C.; Van Hul, M.; Geurts, L.; Chilloux, J.; Ottman, N.; Duparc, T.; Lichtenstein, L.; et al. A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice. Nat. Med. 2017, 23, 107–113. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  135. Artis, D.; Wang, M.L.; Keilbaugh, S.A.; He, W.; Brenes, M.; Swain, G.P.; Knight, P.A.; Donaldson, D.D.; Lazar, M.A.; Miller, H.R.; et al. Relmbeta/fizz2 is a goblet cell-specific immune-effector molecule in the gastrointestinal tract. Proc. Natl. Acad. Sci. USA 2004, 101, 13596–13600. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  136. Suemori, S.; Lynch-Devaney, K.; Podolsky, D.K. Identification and characterization of rat intestinal trefoil factor: Tissue- and cell-specific member of the trefoil protein family. Proc. Natl. Acad. Sci. USA 1991, 88, 11017–11021. [Google Scholar] [CrossRef] [Green Version]
  137. Heilbronn, L.K.; Campbell, L.V. Adipose tissue macrophages, low grade inflammation and insulin resistance in human obesity. Curr. Pharm. Des. 2008, 14, 1225–1230. [Google Scholar] [CrossRef]
  138. Lumeng, C.N.; Saltiel, A.R. Inflammatory links between obesity and metabolic disease. J. Clin. Investig. 2011, 121, 2111–2117. [Google Scholar] [CrossRef] [Green Version]
  139. Osborn, O.; Olefsky, J.M. The cellular and signaling networks linking the immune system and metabolism in disease. Nat. Med. 2012, 18, 363–374. [Google Scholar] [CrossRef]
  140. Brestoff, J.R.; Artis, D. Immune regulation of metabolic homeostasis in health and disease. Cell 2015, 161, 146–160. [Google Scholar] [CrossRef] [Green Version]
  141. Lackey, D.E.; Olefsky, J.M. Regulation of metabolism by the innate immune system. Nat. Rev. Endocrinol. 2016, 12, 15–28. [Google Scholar] [CrossRef] [PubMed]
  142. Lee, S.Y.; Lee, S.H.; Yang, E.J.; Kim, E.K.; Kim, J.K.; Shin, D.Y.; Cho, M.L. Metformin ameliorates inflammatory bowel disease by suppression of the stat3 signaling pathway and regulation of the between th17/treg balance. PLoS ONE 2015, 10, e0135858. [Google Scholar] [CrossRef] [Green Version]
  143. Li, S.N.; Wang, X.; Zeng, Q.T.; Feng, Y.B.; Cheng, X.; Mao, X.B.; Wang, T.H.; Deng, H.P. Metformin inhibits nuclear factor kappab activation and decreases serum high-sensitivity c-reactive protein level in experimental atherogenesis of rabbits. Heart Vessel. 2009, 24, 446–453. [Google Scholar] [CrossRef] [PubMed]
  144. Huang, N.L.; Chiang, S.H.; Hsueh, C.H.; Liang, Y.J.; Chen, Y.J.; Lai, L.P. Metformin inhibits tnf-alpha-induced ikappab kinase phosphorylation, ikappab-alpha degradation and il-6 production in endothelial cells through pi3k-dependent ampk phosphorylation. Int. J. Cardiol. 2009, 134, 169–175. [Google Scholar] [CrossRef]
  145. Png, C.W.; Linden, S.K.; Gilshenan, K.S.; Zoetendal, E.G.; McSweeney, C.S.; Sly, L.I.; McGuckin, M.A.; Florin, T.H. Mucolytic bacteria with increased prevalence in ibd mucosa augment in vitro utilization of mucin by other bacteria. Am. J. Gastroenterol. 2010, 105, 2420–2428. [Google Scholar] [CrossRef] [PubMed]
  146. Hansen, C.H.; Holm, T.L.; Krych, L.; Andresen, L.; Nielsen, D.S.; Rune, I.; Hansen, A.K.; Skov, S. Gut microbiota regulates nkg2d ligand expression on intestinal epithelial cells. Eur. J. Immunol. 2013, 43, 447–457. [Google Scholar] [CrossRef] [PubMed]
  147. Depommier, C.; Everard, A.; Druart, C.; Plovier, H.; Van Hul, M.; Vieira-Silva, S.; Falony, G.; Raes, J.; Maiter, D.; Delzenne, N.M.; et al. Supplementation with akkermansia muciniphila in overweight and obese human volunteers: A proof-of-concept exploratory study. Nat. Med. 2019, 25, 1096–1103. [Google Scholar] [CrossRef] [PubMed]
  148. Rotter, V.; Nagaev, I.; Smith, U. Interleukin-6 (il-6) induces insulin resistance in 3t3-l1 adipocytes and is, like il-8 and tumor necrosis factor-alpha, overexpressed in human fat cells from insulin-resistant subjects. J. Biol. Chem. 2003, 278, 45777–45784. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  149. Kang, C.S.; Ban, M.; Choi, E.J.; Moon, H.G.; Jeon, J.S.; Kim, D.K.; Park, S.K.; Jeon, S.G.; Roh, T.Y.; Myung, S.J.; et al. Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium-induced colitis. PLoS ONE 2013, 8, e76520. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  150. Weigert, C.; Hennige, A.M.; Brodbeck, K.; Haring, H.U.; Schleicher, E.D. Interleukin-6 acts as insulin sensitizer on glycogen synthesis in human skeletal muscle cells by phosphorylation of ser473 of akt. Am. J. Physiol. Endocrinol. Metab. 2005, 289, E251–E257. [Google Scholar] [CrossRef] [Green Version]
  151. Bharti, A.C.; Aggarwal, B.B. Nuclear factor-kappa b and cancer: Its role in prevention and therapy. Biochem. Pharmacol. 2002, 64, 883–888. [Google Scholar] [CrossRef]
  152. Inan, M.S.; Rasoulpour, R.J.; Yin, L.; Hubbard, A.K.; Rosenberg, D.W.; Giardina, C. The luminal short-chain fatty acid butyrate modulates nf-kappab activity in a human colonic epithelial cell line. Gastroenterology 2000, 118, 724–734. [Google Scholar] [CrossRef]
  153. Kinoshita, M.; Suzuki, Y.; Saito, Y. Butyrate reduces colonic paracellular permeability by enhancing ppargamma activation. Biochem. Biophys. Res. Commun. 2002, 293, 827–831. [Google Scholar] [CrossRef]
  154. Li, X.; Wang, N.; Yin, B.; Fang, D.; Jiang, T.; Fang, S.; Zhao, J.; Zhang, H.; Wang, G.; Chen, W. Effects of lactobacillus plantarum ccfm0236 on hyperglycaemia and insulin resistance in high-fat and streptozotocin-induced type 2 diabetic mice. J. Appl. Microbiol. 2016, 121, 1727–1736. [Google Scholar] [CrossRef] [PubMed]
  155. Chen, P.; Zhang, Q.; Dang, H.; Liu, X.; Tian, F.; Zhao, J.; Chen, Y.; Zhang, H.; Chen, W. Antidiabetic effect of lactobacillus casei ccfm0412 on mice with type 2 diabetes induced by a high-fat diet and streptozotocin. Nutrition 2014, 30, 1061–1068. [Google Scholar] [CrossRef] [PubMed]
  156. Tian, P.; Li, B.; He, C.; Song, W.; Hou, A.; Tian, S.; Meng, X.; Li, K.; Shan, Y. Antidiabetic (type 2) effects of lactobacillus g15 and q14 in rats through regulation of intestinal permeability and microbiota. Food Funct. 2016, 7, 3789–3797. [Google Scholar] [CrossRef]
  157. Sun, K.Y.; Xu, D.H.; Xie, C.; Plummer, S.; Tang, J.; Yang, X.F.; Ji, X.H. Lactobacillus paracasei modulates lps-induced inflammatory cytokine release by monocyte-macrophages via the up-regulation of negative regulators of nf-kappab signaling in a tlr2-dependent manner. Cytokine 2017, 92, 1–11. [Google Scholar] [CrossRef]
  158. Xue, J.; Li, X.; Liu, P.; Li, K.; Sha, L.; Yang, X.; Zhu, L.; Wang, Z.; Dong, Y.; Zhang, L.; et al. Inulin and metformin ameliorate polycystic ovary syndrome via anti-inflammation and modulating gut microbiota in mice. Endocr. J. 2019, 66, 859–870. [Google Scholar] [CrossRef] [Green Version]
  159. Li, T.; Chiang, J.Y. Bile acid signaling in metabolic disease and drug therapy. Pharmacol. Rev. 2014, 66, 948–983. [Google Scholar] [CrossRef] [Green Version]
  160. Sansome, D.J.; Xie, C.; Veedfald, S.; Horowitz, M.; Rayner, C.K.; Wu, T. Mechanism of glucose-lowering by metformin in type 2 diabetes: Role of bile acids. Diabetes Obes. Metab. 2020, 22, 141–148. [Google Scholar] [CrossRef] [PubMed]
  161. Caspary, W.F.; Creutzfeldt, W. Inhibition of bile salt absorption by blood-sugar lowering biguanides. Diabetologia 1975, 11, 113–117. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  162. Scarpello, J.H.; Hodgson, E.; Howlett, H.C. Effect of metformin on bile salt circulation and intestinal motility in type 2 diabetes mellitus. Diabet. Med. 1998, 15, 651–656. [Google Scholar] [CrossRef]
  163. Meng, X.M.; Ma, X.X.; Tian, Y.L.; Jiang, Q.; Wang, L.L.; Shi, R.; Ding, L.; Pang, S.G. Metformin improves the glucose and lipid metabolism via influencing the level of serum total bile acids in rats with streptozotocin-induced type 2 diabetes mellitus. Eur. Rev. Med. Pharmacol. Sci. 2017, 21, 2232–2237. [Google Scholar]
  164. Trabelsi, M.S.; Daoudi, M.; Prawitt, J.; Ducastel, S.; Touche, V.; Sayin, S.I.; Perino, A.; Brighton, C.A.; Sebti, Y.; Kluza, J.; et al. Farnesoid x receptor inhibits glucagon-like peptide-1 production by enteroendocrine l cells. Nat. Commun. 2015, 6, 7629. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  165. Li, F.; Jiang, C.; Krausz, K.W.; Li, Y.; Albert, I.; Hao, H.; Fabre, K.M.; Mitchell, J.B.; Patterson, A.D.; Gonzalez, F.J. Microbiome remodelling leads to inhibition of intestinal farnesoid x receptor signalling and decreased obesity. Nat. Commun 2013, 4, 2384. [Google Scholar] [CrossRef] [PubMed]
  166. Watanabe, M.; Horai, Y.; Houten, S.M.; Morimoto, K.; Sugizaki, T.; Arita, E.; Mataki, C.; Sato, H.; Tanigawara, Y.; Schoonjans, K.; et al. Lowering bile acid pool size with a synthetic farnesoid x receptor (fxr) agonist induces obesity and diabetes through reduced energy expenditure. J. Biol. Chem. 2011, 286, 26913–26920. [Google Scholar] [CrossRef] [Green Version]
  167. Sayin, S.I.; Wahlstrom, A.; Felin, J.; Jantti, S.; Marschall, H.U.; Bamberg, K.; Angelin, B.; Hyotylainen, T.; Oresic, M.; Backhed, F. Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring fxr antagonist. Cell Metab. 2013, 17, 225–235. [Google Scholar] [CrossRef] [Green Version]
  168. Pathak, P.; Xie, C.; Nichols, R.G.; Ferrell, J.M.; Boehme, S.; Krausz, K.W.; Patterson, A.D.; Gonzalez, F.J.; Chiang, J.Y.L. Intestine farnesoid x receptor agonist and the gut microbiota activate g-protein bile acid receptor-1 signaling to improve metabolism. Hepatology 2018, 68, 1574–1588. [Google Scholar] [CrossRef]
  169. Ma, K.; Saha, P.K.; Chan, L.; Moore, D.D. Farnesoid x receptor is essential for normal glucose homeostasis. J. Clin. Investig. 2006, 116, 1102–1109. [Google Scholar] [CrossRef] [Green Version]
  170. Cariou, B.; van Harmelen, K.; Duran-Sandoval, D.; van Dijk, T.H.; Grefhorst, A.; Abdelkarim, M.; Caron, S.; Torpier, G.; Fruchart, J.C.; Gonzalez, F.J.; et al. The farnesoid x receptor modulates adiposity and peripheral insulin sensitivity in mice. J. Biol. Chem. 2006, 281, 11039–11049. [Google Scholar] [CrossRef] [Green Version]
  171. Zhang, Y.; Lee, F.Y.; Barrera, G.; Lee, H.; Vales, C.; Gonzalez, F.J.; Willson, T.M.; Edwards, P.A. Activation of the nuclear receptor fxr improves hyperglycemia and hyperlipidemia in diabetic mice. Proc. Natl. Acad. Sci. USA 2006, 103, 1006–1011. [Google Scholar] [CrossRef] [Green Version]
  172. Clarke, S.F.; Murphy, E.F.; Nilaweera, K.; Ross, P.R.; Shanahan, F.; O’Toole, P.W.; Cotter, P.D. The gut microbiota and its relationship to diet and obesity: New insights. Gut Microbes 2012, 3, 186–202. [Google Scholar] [CrossRef]
  173. Louis, S.; Tappu, R.M.; Damms-Machado, A.; Huson, D.H.; Bischoff, S.C. Characterization of the gut microbial community of obese patients following a weight-loss intervention using whole metagenome shotgun sequencing. PLoS ONE 2016, 11, e0149564. [Google Scholar] [CrossRef]
  174. Hollister, E.B.; Gao, C.; Versalovic, J. Compositional and functional features of the gastrointestinal microbiome and their effects on human health. Gastroenterology 2014, 146, 1449–1458. [Google Scholar] [CrossRef] [Green Version]
  175. Hu, S.; Wang, Y.; Lichtenstein, L.; Tao, Y.; Musch, M.W.; Jabri, B.; Antonopoulos, D.; Claud, E.C.; Chang, E.B. Regional differences in colonic mucosa-associated microbiota determine the physiological expression of host heat shock proteins. Am. J. Physiol. Gastrointest. Liver Physiol. 2010, 299, G1266–G1275. [Google Scholar] [CrossRef]
  176. Harrell, L.; Wang, Y.; Antonopoulos, D.; Young, V.; Lichtenstein, L.; Huang, Y.; Hanauer, S.; Chang, E. Standard colonic lavage alters the natural state of mucosal-associated microbiota in the human colon. PLoS ONE 2012, 7, e32545. [Google Scholar] [CrossRef] [PubMed]
  177. Winter, S.E.; Winter, M.G.; Xavier, M.N.; Thiennimitr, P.; Poon, V.; Keestra, A.M.; Laughlin, R.C.; Gomez, G.; Wu, J.; Lawhon, S.D.; et al. Host-derived nitrate boosts growth of e. Coli in the inflamed gut. Science 2013, 339, 708–711. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  178. Rhee, S.H. Lipopolysaccharide: Basic biochemistry, intracellular signaling, and physiological impacts in the gut. Intest. Res. 2014, 12, 90–95. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  179. Florez, H.; Pan, Q.; Ackermann, R.T.; Marrero, D.G.; Barrett-Connor, E.; Delahanty, L.; Kriska, A.; Saudek, C.D.; Goldberg, R.B.; Rubin, R.R.; et al. Impact of lifestyle intervention and metformin on health-related quality of life: The diabetes prevention program randomized trial. J. Gen. Intern. Med. 2012, 27, 1594–1601. [Google Scholar] [CrossRef] [Green Version]
  180. Van Eldere, J.; Robben, J.; De Pauw, G.; Merckx, R.; Eyssen, H. Isolation and identification of intestinal steroid-desulfating bacteria from rats and humans. Appl. Environ. Microbiol. 1988, 54, 2112–2117. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  181. Manichanh, C.; Eck, A.; Varela, E.; Roca, J.; Clemente, J.C.; Gonzalez, A.; Knights, D.; Knight, R.; Estrella, S.; Hernandez, C.; et al. Anal gas evacuation and colonic microbiota in patients with flatulence: Effect of diet. Gut 2014, 63, 401–408. [Google Scholar] [CrossRef] [Green Version]
  182. Overbeek, R.; Olson, R.; Pusch, G.D.; Olsen, G.J.; Davis, J.J.; Disz, T.; Edwards, R.A.; Gerdes, S.; Parrello, B.; Shukla, M.; et al. The seed and the rapid annotation of microbial genomes using subsystems technology (rast). Nucleic Acids Res. 2014, 42, D206–D214. [Google Scholar] [CrossRef] [PubMed]
  183. Desai, M.S.; Seekatz, A.M.; Koropatkin, N.M.; Kamada, N.; Hickey, C.A.; Wolter, M.; Pudlo, N.A.; Kitamoto, S.; Terrapon, N.; Muller, A.; et al. A dietary fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility. Cell 2016, 167, 1339–1353.e21. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  184. Roopchand, D.E.; Carmody, R.N.; Kuhn, P.; Moskal, K.; Rojas-Silva, P.; Turnbaugh, P.J.; Raskin, I. Dietary polyphenols promote growth of the gut bacterium akkermansia muciniphila and attenuate high-fat diet-induced metabolic syndrome. Diabetes 2015, 64, 2847–2858. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  185. Anhe, F.F.; Roy, D.; Pilon, G.; Dudonne, S.; Matamoros, S.; Varin, T.V.; Garofalo, C.; Moine, Q.; Desjardins, Y.; Levy, E.; et al. A polyphenol-rich cranberry extract protects from diet-induced obesity, insulin resistance and intestinal inflammation in association with increased Akkermansia spp. population in the gut microbiota of mice. Gut 2015, 64, 872–883. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  186. Greer, R.L.; Dong, X.; Moraes, A.C.; Zielke, R.A.; Fernandes, G.R.; Peremyslova, E.; Vasquez-Perez, S.; Schoenborn, A.A.; Gomes, E.P.; Pereira, A.C.; et al. Akkermansia muciniphila mediates negative effects of ifngamma on glucose metabolism. Nat. Commun. 2016, 7, 13329. [Google Scholar] [CrossRef] [PubMed]
  187. Zhang, H.; Sparks, J.B.; Karyala, S.V.; Settlage, R.; Luo, X.M. Host adaptive immunity alters gut microbiota. ISME J. 2015, 9, 770–781. [Google Scholar] [CrossRef]
  188. Collado, M.C.; Derrien, M.; Isolauri, E.; de Vos, W.M.; Salminen, S. Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly. Appl. Environ. Microbiol. 2007, 73, 7767–7770. [Google Scholar] [CrossRef] [Green Version]
  189. Kong, F.; Hua, Y.; Zeng, B.; Ning, R.; Li, Y.; Zhao, J. Gut microbiota signatures of longevity. Curr. Biol. 2016, 26, R832–R833. [Google Scholar] [CrossRef] [Green Version]
  190. Gupta, V.K.; Kim, M.; Bakshi, U.; Cunningham, K.Y.; Davis, J.M., 3rd; Lazaridis, K.N.; Nelson, H.; Chia, N.; Sung, J. A predictive index for health status using species-level gut microbiome profiling. Nat. Commun. 2020, 11, 4635. [Google Scholar] [CrossRef] [PubMed]
  191. Johnson, J.S.; Spakowicz, D.J.; Hong, B.Y.; Petersen, L.M.; Demkowicz, P.; Chen, L.; Leopold, S.R.; Hanson, B.M.; Agresta, H.O.; Gerstein, M.; et al. Evaluation of 16s rrna gene sequencing for species and strain-level microbiome analysis. Nat. Commun. 2019, 10, 5029. [Google Scholar] [CrossRef] [Green Version]
  192. Yang, J.; Pu, J.; Lu, S.; Bai, X.; Wu, Y.; Jin, D.; Cheng, Y.; Zhang, G.; Zhu, W.; Luo, X.; et al. Species-level analysis of human gut microbiota with metataxonomics. Front. Microbiol. 2020, 11, 2029. [Google Scholar] [CrossRef]
  193. Schmidt, T.S.B.; Raes, J.; Bork, P. The human gut microbiome: From association to modulation. Cell 2018, 172, 1198–1215. [Google Scholar] [CrossRef] [Green Version]
  194. Rodriguez, J.M.; Murphy, K.; Stanton, C.; Ross, R.P.; Kober, O.I.; Juge, N.; Avershina, E.; Rudi, K.; Narbad, A.; Jenmalm, M.C.; et al. The composition of the gut microbiota throughout life, with an emphasis on early life. Microb. Ecol. Health Dis. 2015, 26, 26050. [Google Scholar] [CrossRef] [PubMed]
  195. Wen, L.; Duffy, A. Factors influencing the gut microbiota, inflammation, and type 2 diabetes. J. Nutr. 2017, 147, 1468S–1475S. [Google Scholar] [CrossRef] [Green Version]
  196. Lundberg, R.; Toft, M.F.; August, B.; Hansen, A.K.; Hansen, C.H. Antibiotic-treated versus germ-free rodents for microbiota transplantation studies. Gut Microbes 2016, 7, 68–74. [Google Scholar] [CrossRef] [Green Version]
  197. Sen, P.; Oresic, M. Metabolic modeling of human gut microbiota on a genome scale: An overview. Metabolites 2019, 9, 22. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  198. Prakash, T.; Taylor, T.D. Functional assignment of metagenomic data: Challenges and applications. Brief. Bioinform. 2012, 13, 711–727. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  199. Gilbert, J.A.; Field, D.; Swift, P.; Thomas, S.; Cummings, D.; Temperton, B.; Weynberg, K.; Huse, S.; Hughes, M.; Joint, I.; et al. The taxonomic and functional diversity of microbes at a temperate coastal site: A ’multi-omic’ study of seasonal and diel temporal variation. PLoS ONE 2010, 5, e15545. [Google Scholar] [CrossRef]
  200. Edwards, J.S.; Ibarra, R.U.; Palsson, B.O. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat. Biotechnol. 2001, 19, 125–130. [Google Scholar] [CrossRef]
  201. Feist, A.M.; Henry, C.S.; Reed, J.L.; Krummenacker, M.; Joyce, A.R.; Karp, P.D.; Broadbelt, L.J.; Hatzimanikatis, V.; Palsson, B.O. A genome-scale metabolic reconstruction for escherichia coli k-12 mg1655 that accounts for 1260 orfs and thermodynamic information. Mol. Syst. Biol. 2007, 3, 121. [Google Scholar] [CrossRef] [PubMed]
  202. Zomorrodi, A.R.; Maranas, C.D. Optcom: A multi-level optimization framework for the metabolic modeling and analysis of microbial communities. PLoS Comput. Biol. 2012, 8, e1002363. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  203. Harcombe, W.R.; Riehl, W.J.; Dukovski, I.; Granger, B.R.; Betts, A.; Lang, A.H.; Bonilla, G.; Kar, A.; Leiby, N.; Mehta, P.; et al. Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics. Cell Rep. 2014, 7, 1104–1115. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  204. Brown, J.B.; Conner, C.; Nichols, G.A. Secondary failure of metformin monotherapy in clinical practice. Diabetes Care 2010, 33, 501–506. [Google Scholar] [CrossRef] [Green Version]
Ijms 22 03566 g001 550
Figure 1. Chemical structures of galegine, metformin, phenformin, and buformin.
Figure 1. Chemical structures of galegine, metformin, phenformin, and buformin.
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Figure 2. Impact of metformin on the gut microbiota. Various in vitro and in vivo studies demonstrated that metformin might exhibit glucose-modulating effects by interacting with the gut microbiome. Each box presents the putative mechanism suggested in this review. For more details, refer to the main text.
Figure 2. Impact of metformin on the gut microbiota. Various in vitro and in vivo studies demonstrated that metformin might exhibit glucose-modulating effects by interacting with the gut microbiome. Each box presents the putative mechanism suggested in this review. For more details, refer to the main text.
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Table
Table 1. Alteration of the gut microbiota biochemical properties in the T2DM patients compared to the healthy subjects or alteration in the metformin treatment compared non-treatment T2DM patients or healthy subjects. ↑ (increase), ↓ (decrease), – (no alteration), NA (not applicable), Ref * (reference number).
Table 1. Alteration of the gut microbiota biochemical properties in the T2DM patients compared to the healthy subjects or alteration in the metformin treatment compared non-treatment T2DM patients or healthy subjects. ↑ (increase), ↓ (decrease), – (no alteration), NA (not applicable), Ref * (reference number).
Ref *PopulationStudy DesignGut MicrobiotaBiochemical
Alterations
[27]ChineseT2DM patients
(n = 170) 		versus Healthy subjects (n = 174)
Family: Lachnospiraceae ↑, Erysipelotrichaceae ↓
Genus: Alistipes ↑, Clostridium ↑, Eubacterium ↓, Faecalibacterium ↓, Subdoligranulum ↑, Parabacteroides ↑
Species: Akkermansia muciniphila ↑, Bacteroides intestinalis ↑, Clostridium bolteae ↑, Clostridium hatheway ↑, Clostridium ramosum ↑, Clostridium symbiosum ↑, Eggerthella lenta ↑, Escherichia coli ↑, Eubacterium rectale ↓, Faecalibacterium prausnitzii ↓, Haemophilus parainfluenzae ↓, Roseburia intestinalis ↓, Roseburia inulinivorans ↓		NA
[30]DanishT2DM patients
(n = 18) 		versus Healthy subjects (n = 18)
α-diversity (Chao 1): –
Phylum: Bacteroidetes ↑, Firmicutes ↓, Proteobacteria ↑
Class: Bacilli ↑, Bacteroidetes ↑, Betaproteobacteria ↑, Clostridia ↓
Genus: Akkermansia ↑, Alistipes ↑, Bacteroides ↓, Bifidobacterium ↓, Bilophila ↑, Catenibacterium ↓, Dialister ↑, Dorea ↑, Erysipelotrichaceae IS ↑, Faecalibacterium ↓, Lachnospiraceae IS ↓, Lactobacillus ↑, Parabacteroides ↑, Prevotella ↑, Roseburia ↓, Ruminococcus ↓, Sporobacter ↑, Subdoligranulum ↓, Succinivibrio ↑, Sutterella ↑
Species: Dorea longicatena ↓		NA
[32]ChineseT2DM patients
(n = 13) 		versus Healthy subjects (n = 44)
α-diversity (Chao 1, Shannon index): ↓
Class: Clostridia ↑, Clostridiales ↑
Family: Lachnospiraceae ↑
Genus: Abiotrophia ↑, Bacteroides ↓, Collinsella ↑, Dorea ↑, Eubacterium ↑, Haemophilus ↓, Megamonas ↓, Peptostreptococcus ↑, Prevotella ↑, Roseburia ↓, Ruminococcus ↑, Sporobacter ↑, Subdoligranulum ↑		NA
[34]PakistaniObese-T2DM
patients
(n = 40)		versus Healthy subjects (n = 20)
α-diversity (Shannon index): ↓
Phylum: Bacteroidetes ↓, Elusimicrobia ↓, Firmicutes ↓, Proteobacteria ↓, Verrucomicrobioa ↓
Class: Bacilli ↓, Bacteroidia ↓, Clostridia ↑, Coriobacteriia ↑, Deltaproteobacteria ↓, Elusimicrobia ↓, Gammaproteobacteria ↓, Negativicutes ↑,
Genus: Allisonella ↑, Bacillus ↓, Christensenellaceae_R_7 ↑, Dialister ↑, Escherichia_Shigella ↓, Eubacterium coprostanoligenes groups ↑, Lactobacillus ↑, Prevotella_9 ↓, Ruminococcus_2 ↓, Subdoligranulum ↑		NA
Metformin Treatment Effects in T2DM Patients
[28]JapaneseT2DM patients
(n = 50)		versus normal subjects (n = 50)
Genus: Atopobium cluster ↓, Lactobacillus ↑, Prevotella ↓
Species: Clostridium coccoides ↓, Lactobacillus plantarum ↑, Lactobacillus reuteri ↑		Fecal organic acids ↓
Acetic acid ↓
Propionic acid ↓
Fecal isovaleric acid ↑
CRP ↑, IL-6 ↑
Metformin treated T2DM (n = 17)versus non treated T2DM (n = 33)
Family: Enterobacteriaceae ↑
Genus: Staphylococcus ↑
Species: Clostridium coccoides ↓, Lactobacillus plantarum ↑, Lactobacillus reuteri ↑		NA
[29]European
old woman		T2DM patients
(n = 53)		versus normal glucose tolerance (n = 43)
Class: Clostridiales ↓
Family: Coriobacteriaceae ↓
Genus: Alistipes ↓, Clostridium ↓, Roseburia ↓,
Species: Bacteroides intestinalis ↓, Eubacterium eligens ↓, Lactobacillus gasseri ↑, Streptococcus mutans ↑		C-peptide ↑
Metformin
treated T2DM
(n = 20)		versus non treated T2DM (n = 33)
Genus: Clostridium ↓, Escherichia ↑, Eubacterium ↓, Klebsiella ↑, Salmonella ↑, Shigella ↑
Species: Escherichia coli ↑		NA
[31]DanishT2DM patients
(n = 75)		versus normal subjects (n = 277)
Family: bp Clostridiales ↓, Peptostreptococcaceae ↓
Genus: Akkermansia ↓, Acidaminococcus ↑, Bilophila ↑, Collinsella ↑, Coprococcus ↓, Escherichia ↑, Holdemania ↑, Lactobacillus ↑, Parabacteroides ↑, Roseburia ↓, Veillonella ↓		NA
Metformin treated T2DM
(n = 58)		versus non treated T2DM (n = 17)
Family: Peptostreptococcaceae ↓
Genus: Akkermansia ↑, Bilophila ↓, Escherichia ↑, Holdemania ↑, Roseburia ↑, Veillonella ↓		NA
Swedish
female		T2DM patients
(n = 53)		versus normal subjects (n = 92)
Family: Peptostreptococcaceae ↓
Genus: Lactobacillus ↑		NA
Metformin treated T2DM
(n = 20)		versus non treated T2DM (n = 33)
Family: bp Clostridiales ↓, Peptostreptococcaceae ↓
Genus: Bilophila ↑, Escherichia ↑, Holdemania ↓, Lactobacillus ↑, Roseburia ↓, Veillonella ↓		NA
ChineseT2DM patients
(n = 71)		versus normal subjects (n = 185)
Family: bp Clostridiales ↓, Peptostreptococcaceae ↓,
Genus: Acidaminococcus ↑, Bilophila ↑, Collinsella ↑, Coprococcus ↓, Escherichia ↑, Haemophilus ↓, Holdemania ↑, Lactobacillus ↑, Oscillibacter ↑, Roseburia ↓, Veillonella ↓		NA
Metformin treated T2DM (n = 15)versus non treated T2DM (n = 56)
Family: bp Clostridiales ↑, Peptostreptococcaceae ↓
Genus: Bilophila ↑, Collinsella ↑, Escherichia ↓, Holdemania ↑, Parabacteroides ↑, Roseburia ↑, Subdoligranulum ↑, Veillonella ↓		NA
[33]ChineseT2DM patients
(n = 26)		versus normal subjects (n = 50)
α-diversity (Shannon index): ↓
Phylum: Firmicutes ↓
Class: Fusobacteriia ↑
Family: Enterobacteriaceae ↓, Erysipelotrichaceae ↑, Erysipelotrichaceae ↑, Porphyromonadaceae ↑
Genus: Faecalibacterium ↓, Fusobacterium ↑, Lactobacillus ↑, Ruminococcus ↓		NA
Metformin treated T2DM
(n = 51)		versus non treated T2DM (n = 26)
α-diversity (Shannon index): –
Phylum: Actinobacteria ↓
Family: Enterobacteriaceae ↓, Spirochaetaceae ↑, Turicibacteraceae ↑
Genus: Fusobacterium ↑, Turicibacter ↑		NA
[55]BritishOn metformin T2DM
(visit 1 and 4,
n = 12)		versus off metformin T2DM (visit 2 and 3, n = 12)
Genus: SMB53 ↓, Adlercreutzia ↓, Eubacterium ↑		Serum bile acids ↓
Fecal bile acids ↑
GLP-1 ↑
[56]SpanishMetformin treated T2DM for 4 months (n = 22)versus before metformin treatment in T2DM (n = 22)
Phylum: Proteobacteria ↑, Firmicutes ↑
Genus: Actinetobacter ↑, Alkaliphilus ↓, Citrobacter ↑, Cronobacter ↑, Dermcoccus ↑, Desulfurispirillum ↑, Dickeya ↑, Edwardsiella ↑, Enterobacter ↑, Erwinia ↑, Escherichia ↑, Holdemania ↓, Intestinibacter ↓, Klebsiella ↓, Methylobaciilus ↑, Pantoea ↑, Pectobacterium ↑, Photorhabdus ↑, Providencia ↑, Pseudomonas ↑, Rahnella ↑, Rheinheimera ↑, Salmonella ↑, Subdoligranulum ↓, Xanthomonas ↑, Xenohabdus ↑, Yersinia ↑
Species: Akkermansia muciniphila ↑, Bifidobacterium adolescentis ↑		Fecal propionate, butyrate, lactate and succinate ↑
Plasma bile acids ↑
[57]ColombianT2DM patients
(n = 28)		versus normal subjects (n = 84)
Genus: Enterococcus casseliflavus ↓, Clostridiaceae 02d06 ↑, Prevotella ↑		NA
Metformin treated T2DM
(n = 14)		versus non treated T2DM (n = 14)
Genus: Bacnesiellaceae ↓, Butyrivibrio ↑, Clostridiaceae 02d06 ↓, Megasphaera ↑, Oscillospira ↓, Prevotella ↑		NA
[58]ScandinavianMetformin treated T2DM
(n = 23)		versus non treated T2DM (n = 7)
Family: Enterobacteriaceae ↑,
Genus: Bacnesiellaceae ↓, Butyrivibrio ↑, Clostridiaceae 02d06 ↓, Megasphaera ↑, Oscillospira ↓, Prevotella ↑		SCFA concentration –
[59]ChineseMetformin treated for 3 days in T2DM (n = 22)versus before metformin treatment in T2DM (n = 22)
Genus: Bacteroides ↓
Species: Bacteroides fragilis ↓, Bacteroides finegoldii ↓, Bacteroides thetaiotaomicron ↓, Bacteroides uniformis ↓, Bacteroides ovatus ↓, Bacteroides intestinalis ↓, Bacteroides stercoris ↓, Bacteroides eggerthii ↓, Bacteroides fluxus ↓, Bacteroides caccae ↓, Bacteroides dorei ↓		GUDCA, Tauroursodeoxycholic acid,
Conjugated Secondary bile acids ↑
Total bile acids –
Metformin Treatment Effects in Healthy Subjects
[60]CaucasianMetformin treated for 7 days in healthy subjects
(n = 18)		versus before metformin treatment in healthy subjects (n = 18)
α-diversity (Shannon index): ↓
Class: Bacilli ↑, Enterobacteriales ↑, Episilonproteobacteria ↑, Gammaproteobacteria ↑, Negativicutes ↓
Order: Clostridiaceae_1 ↓, Lactobacillales ↑, Peptostreptococcaceae ↓, Selenomonadales ↓
Family: Asaccharospora ↓, Enterobacteriaceae ↑, Romboutsia ↓
Genus: Blautia ↑, Ruminiclostridium_6 ↓, Streptococcus ↑		NA
[61]DanishMetformin treated for 6 weeks in healthy subjects
(n = 22)		versus before metformin treatment in healthy subjects (n = 18)
Genus: Bilophila ↑, Caproiciproducens ↑, Clostridium_sensu_stricto_1 ↓, Escherichia-Shigella ↑, Intestinibacter ↓, Prevotella ↑, Terrisporobacter ↓
Species: Alistipes finegoldii ↑, Bilophila wadsworthia ↑, Intestinibacter bartlettii ↓		NA
Table
Table 3. Enrolled clinical studies to investigate the relationship between the gut microbiome and metformin in recruiting or active state.
Table 3. Enrolled clinical studies to investigate the relationship between the gut microbiome and metformin in recruiting or active state.
Clinical Trials.gov IdentifierStudy TitleCountryStudy PopulationInterventions
NCT04194515Gut Microbiota and Bile Acids in Type 2 Diabetes MellitusTaiwanOutpatients and treatment-naïve male patients with type 2
diabetes		Drug: YH1
Drug: metformin
NCT04287387Response of Gut Microbiota in Type 2 Diabetes to Hypoglycemic AgentsChinaType 2 diabetes patients
(18–65 years)		Drug: Glucophage 500 mg Tablet
Drug: Acarbose Tablets
Drug: Sitagliptin tablet
Drug: Dapagliflozin Tablet
Drug: Pioglitazone Tablets
Drug: Glimepiride Tablets
NCT04639492Postbiotic MBS and Metformin
Combination in Patients With T2DM		TaiwanType 2 diabetes patients
(20–70 years)		Dietary Supplement: MBS
oral solution
Oral BIDAC, twice a day before breakfast and dinner times
NCT02960659Title: Therapeutic Targets in African-American Youth With Type 2
Diabetes		United StatesAfrican-American
(12–25 years)		Drug: Metformin and Liraglutide
Drug: Metformin
NCT03558867Personalized Medicine in
Pre-diabetes and Early Type 2
Diabetes		AustraliaPre-diabetes or newly-diagnosed with type 2 diabetes
(in the last 6 months)		Drug: Metformin + Healthy diet
Drug: Metformin + Personalized diet
NCT03732690The Interaction Between Protein
Intake, Gut Microbiota and Type 2 Diabetes in Subjects With Different Ethnic Backgrounds		FranceT2DM patients: Caucasian
(n = 80), Caribbean (n = 40)
stable dose of metformin and
do not use insulin or
proton-pump inhibitors.		Other: Diet HP
Other: Diet LP
NCT04089280Probiotics in Metformin Intolerant Patients With Type 2 DiabetesPolandT2DM patients (18–75 years) with metformin treatment in the last 3 months (<1500 mg/d)Dietary Supplement: Sanprobi
Barrier-multispecies probiotic
Other: Placebo Comparator
NCT03718715The Interaction Between Metformin and Microbiota—The MEMO
Study. (MEMO)		SwedenNewly diagnosed patients with type 2 diabetes without previous treatment with metformin
(40–80 years).		Drug: Metformin
NCT03489317Gut Microbiomes in Patients
With Metabolic Syndrome		HongkongResidents in Hongkong (no metabolic syndrome, metabolic syndrome-partial, metabolic syndrome-full)Drug: Metformin
Behavioral: lifestyle modification
Drug: Simvastatin 10 mg
Drug: Amlodipine 5 mg
NCT02609815Initial Combination of Gemigliptin and Metformin on
Microbiota Change		Republic of KoreaType 2 patients with drug naive for 6 weeksDrug: gemigliptin/metformin
Drug: glimepiride/metformin
NCT04341571Effect of Probiotics Versus Metformin on Glycemic Control, Insulin Sensitivity and Insulin
Secretion in Prediabetes.		MexicoPre-diabetes Dietary Supplement: Probiotics
Drug: Metformin
NCT04209075Prebiotics and Metformin Improve Gut and Hormones in Type 2 Diabetes in Youth (MIGHTY-fiber)United StatesType 2 patients (10–25 years)Dietary Supplement: Biomebliss Drug: Metformin
Dietary Supplement: Placebo
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Lee, C.B.; Chae, S.U.; Jo, S.J.; Jerng, U.M.; Bae, S.K. The Relationship between the Gut Microbiome and Metformin as a Key for Treating Type 2 Diabetes Mellitus. Int. J. Mol. Sci. 2021, 22, 3566. https://doi.org/10.3390/ijms22073566

AMA Style

Lee CB, Chae SU, Jo SJ, Jerng UM, Bae SK. The Relationship between the Gut Microbiome and Metformin as a Key for Treating Type 2 Diabetes Mellitus. International Journal of Molecular Sciences. 2021; 22(7):3566. https://doi.org/10.3390/ijms22073566

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Lee, Chae Bin, Soon Uk Chae, Seong Jun Jo, Ui Min Jerng, and Soo Kyung Bae. 2021. "The Relationship between the Gut Microbiome and Metformin as a Key for Treating Type 2 Diabetes Mellitus" International Journal of Molecular Sciences 22, no. 7: 3566. https://doi.org/10.3390/ijms22073566

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