Abstract
Ferroptosis, a term first proposed in 2012, is iron-dependent, non-apoptotic regulatory cell death induced by erastin. Ferroptosis was originally discovered during synthetic lethal screening for drugs sensitive to RAS mutant cells, and is closely related to synthetic lethality. Ferroptosis sensitizes cancer stem cells and tumors that undergo epithelial−mesenchymal transition and are resistant to anticancer drugs or targeted therapy. Therefore, ferroptosis-inducing molecules are attractive new research targets. In contrast, synthetic lethal strategies approach mechanisms and genetic abnormalities that cannot be directly targeted by conventional therapeutic strategies, such as RAS mutations, hypoxia, and abnormalities in the metabolic environment. They also target the environment and conditions specific to malignant cells, have a low toxicity to normal cells, and can be used in combination with known drugs to produce new ones. However, the concept of synthetic lethality has not been widely adopted with ferroptosis. In this review, we surveyed the literature on ferroptosis-related factors and synthetic lethality to examine the potential therapeutic targets in ferroptosis-related molecules, focusing on factors related to synthetic lethality, discovery methods, clinical application stages, and issues in drug discovery.
1. Introduction
Apoptosis, originally termed by Kerr and Wyllie in 1972 [], is regulated cell death (RCD), a process that is distinct from accidental cell death (ACD), and its molecular mechanisms have been elucidated. The results of this research have led to an understanding of physiological biological mechanisms, the nature of cancer, and applications as therapeutic strategies against cancer [,]. Subsequently, necrosis, which was initially thought to be ACD, was also found to have a molecular mechanism similar to RCD, indicating that RCD is not limited to apoptosis []. In 2003, the small-molecule erastin was discovered to selectively induce cell death in genetically engineered cells with oncogenic RAS mutations, and in 2012, a previously unknown type of RCD characterized as iron-dependent, nonapoptotic cell death induced by erastin was termed ferroptosis []. Ferroptosis is cell death caused by cell membrane damage due to lipid peroxidation, accompanied by the iron-dependent production of reactive oxygen species (ROS) []. Many unknown mechanisms of ferroptosis remain, and further research is needed to determine its regulators and whether it is a truly independent type of RCD.
In contrast, synthetic lethality (also known as synthetic lethal) is a phenomenon in which mutations in either of two genes have no effect on cell survival, but abnormalities in both genes lead to cell death []. Synthetic lethality is observed in loss-of-function mutations (as in tumor suppressor genes), but it can also be found in gain-of-function mutations (as in oncogenes). Synthetic lethal cytotoxicity caused by certain intrinsic conditions, such as genetic background, hypoxia, or metabolic changes, or extrinsic conditions like treatment with DNA-damaging agents, is referred to as conditional synthetic lethality [].
To date, more than 90 targeted cancer drugs have been developed [,], most of which are small molecules or antibodies that target gain-of-function mutations in oncogenes. In contrast, it is difficult to restore the function of proteins encoded by inactivated tumor suppressor genes, hampering the development of anticancer drugs targeting loss-of-function mutations in tumor suppressor genes [,]. However, it is anticipated that the mechanism of synthetic lethality can be used to overcome this barrier, thereby providing a basis for the identification of genes that exhibit synthetic lethality with tumor suppressor genes.
Ferroptosis is defined as “cell death due to synthetic lethality caused by increased RAS activity and ROS” []; it was discovered in the screening of drugs sensitive to RAS mutant cells and is closely related to synthetic lethality. Ferroptosis-related molecules are new targets of research, but they have attracted much attention because of their unique properties, which are described in this review. Although both ferroptosis and synthetic lethality are relatively new concepts, ferroptosis is cell death that is closely related to the cellular environment, such as oxidative stress and metabolic abnormalities, and is highly compatible with synthetic lethal strategies, all of which are appealing in that new drug effects can be expected by pairing with existing drugs.
In this review, we introduce several reports related to ferroptosis regulators and synthetic lethality, and categorize the literature based on the presence or absence of RAS mutations. For each study, we focused on the factors related to synthetic lethality, the specific search method, the stage of clinical application, and issues in drug discovery, as well as examined potential therapeutic targets in ferroptosis-related molecules.
2. Overview of Ferroptosis
Cell death can be divided into ACD and RCD. RCD has a tightly structured signaling cascade and molecularly defined effector mechanisms, the most common of which is apoptosis []. In 2003, pioneering research in the study of ferroptosis found that the small-molecule erastin selectively induced cell death in genetically engineered cells with oncogenic RAS mutations [], and in 2012, the term ferroptosis was coined for a previously unknown type of RCD that was erastin-induced and iron-dependent nonapoptotic cell death []. Ferroptosis is a unique iron-dependent form of programmed cell death driven by lipid peroxidation in cells [], and it is distinct from necrosis, apoptosis, and autophagy [,,,]. Morphologically, the characteristics of ferroptosis-induced cell death are shrinkage of the mitochondria with increased membrane density and a reduction in or the disappearance of mitochondrial cristae. Furthermore, ferroptosis does not have the morphological features of typical apoptosis (e.g., chromatin condensation and margination), necrosis (e.g., cytoplasmic and organelle swelling, and plasma membrane rupture), and autophagy (e.g., formation of double membrane-enclosed vesicles) [,,,,] (Table 1). Despite this understanding, many unknown mechanisms for ferroptosis remain, and further research is warranted to determine its regulators and whether it is a truly independent type of RCD.
Table 1.
The characteristics of ferroptosis and other type of RCD (modified from 4, 11, 12).
Previous studies have reported that ferroptosis is regulated by multiple genes, but the major regulators are glutathione peroxidase 4 (GPX4) and ferroptosis suppressor protein 1 (FSP1) [,,] (Table 2 and Figure 1).
Table 2.
The common inducers and inhibitors of ferroptosis.
Figure 1.
Schematic diagram of the ferroptosis signaling pathway. The ferroptosis pathway is triggered by several different classes of small molecules, centered on GPX4 and FSP1. Glutathione peroxidase 4 (GPX4) hydrolyzes lipid peroxides to harmless lipid alcohols (-OH). GPX4 requires glutathione (GSH) as a cofactor, which is oxidized by GPX4 (GSSG) and then reduced to GSH by glutathione reductase (GR). GSH synthesis is dependent on cysteine transported by system Xc- (also called SLC7A11). Ferroptosis suppressor protein 1 (FSP1) produces ubiquinol from ubiquinone independently of GSH, and acts as a lipophilic radical scavenger in the membrane, protecting it from ferroptosis. Oxidative phosphorylation (OXPHOS) and tricarboxylic acid (TCA) cycles are required for ferroptosis caused by cystine depletion and system Xc-. p53 acts positively against ferroptosis by promoting SAT1, GLS2, and CDKN1A, and inhibiting DPP4 and SLCA11. It is thought that p53 acts both positively and negatively on ferroptosis.
GPX4 is a member of the GPX family, consisting of GPX1 to GPX8. It converts the small peptide glutathione (GSH) to oxidized glutathione and reduces cytotoxic lipid peroxide (L-OOH) to the corresponding alcohol (L-OH) [,]. GPX4 also has an antioxidant effect on cell membrane damage and lipid peroxidation in ferroptosis. The inhibition of GPX4 causes lipid peroxidation accumulation and the induction of ferroptosis []. The ferroptosis inducer (1S,3R)-RSL3 (RSL3) and the compounds DPI7 and DPI10 directly affect GPX4 and inhibit its activity, resulting in ferroptosis []. GSH synthesis, which is affected by GPX4, involves an amino acid antitransporter called System Xc-, which is widely distributed in phospholipids []. System Xc- is a heterodimer composed of two subunits, SLC7A11 and SLC3A2. Glutamine and cystine are exchanged at a ratio of 1:1, and cystine is taken up into cells where it is reduced to the GSH precursor cysteine. Cysteine affects GSH because GSH is a tripeptide consisting of glutamic acid, cysteine, and glycine []. Therefore, system Xc- inhibition results in the inhibition of the intracellular uptake of cystine, GSH reduction, decreased GPX4 activity, and lipid ROS accumulation, causing oxidative damage and ferroptosis. Furthermore, it was reported that p53 downregulates the expression of SLC7A11 in heterodimers of system Xc-, thereby inhibiting cystine uptake by system Xc-, and consequently, the induction of ferroptosis [,]. The role of p53 is controversial as it both promotes and inhibits ferroptosis. The activation of spermidine/spermine N1-acetyltransferase 1 (SAT1), a transcriptional target gene for p53, induces ROS production, lipid peroxidation, and ferroptosis, and correlates with expression levels of arachidonate 15-lipoxygenase (ALOX15) []. Additionally, glutaminase 2 (GLS2) has been identified as a transcriptional target for p53 [], and that knockout of GLS2 inhibits ferroptosis []. Although there are reports that p53 enhances ferroptosis, several studies have reported that p53 suppresses ferroptosis. In colorectal cancer (CRC), the depletion of p53 prevents the nuclear accumulation of dipeptidyl peptidase-4 (DPP4), and consequently, binding to the membrane-related DPP4-mediated trigger NADPH oxidase 1 (NOX1), thereby inducing lipid peroxidation and ferroptosis []. Furthermore, p53-mediated expression of cyclin-dependent kinase inhibitor 1A (CDKN1A, also known as p21) results in resistance to ferroptosis []. p53 is an important tumor suppressor gene involved in many critical cellular processes, such as cell cycle arrest, apoptosis, and metabolism []; however, its role in ferroptosis is unclear and warrants further investigation.
In 2019, a gene encoding a protein named FSP1 (previously called apoptosis-inducing factor mitochondrial 2 (AIFM2)) was identified as a ferroptosis suppressor that functions independently of GPX4 in the plasma membrane [,,]. FSP1 functions as an NADPH-dependent CoQ oxidoreductase and reduces CoQ10 (also known as ubiquinone-10), which is a product of the mevalonate pathway. The reduced CoQ10 then acts as a lipophilic radical-trapping antioxidant that prevents lipid peroxidation and ferroptosis. It was also revealed that the translocation of FSP1 to the plasma membrane requires the N-myristoylation of FSP1. Thus, the NADPH-FSP1-CoQ10 pathway is a strong inhibitor of lipid peroxidation and ferroptosis. Additionally, among many cultured human cancer cell lines, the level of resistance to ferroptosis is positively correlated with the FSP1 expression level, suggesting that changes to FSP1 are clinically significant. Furthermore, in 2021, dihydroorotate dehydrogenase (DHODH) was discovered, and it is a regulator of mitochondrial membrane ferroptosis [].
3. Overview of Synthetic Lethality
Synthetic lethality is classically defined as a setting in which the inactivation of either of two genes individually has little effect on cell viability, but the loss of function of both genes simultaneously leads to cell death [,]. In a broader context, synthetic lethality includes cases where the presence of two mutations is more detrimental to cell survival than of either mutation alone (also known as synthetic sickness) []. Synthetic lethality is most often found in loss-of-function mutations like in cancer suppressor genes, but is also found in gain-of-function mutations like in oncogenes. The main scenarios of synthetic lethality are as follows []: (1) loss-of-function mutations in gene A alone are viable, but mutations in gene B cause cell death; (2) loss-of-function mutations in gene A alone are viable, but inhibition of gene B leads to cell death; (3) overexpression of gene A alone is viable, but inhibition of gene B causes cell death; and (4) synthetic cytotoxicity occurs due to certain intrinsic conditions, such as genetic background, hypoxia, and metabolic changes, or extrinsic conditions like treatment with DNA-damaging agents. The latter is referred to as conditional synthetic lethality [].
For example, PARP inhibitors used to treat hereditary breast and ovarian cancer syndrome correspond to synthetic lethality scenario (2) [,], but synthetic lethality associated with ferroptosis varies and can be any of the four.
4. Anticancer Drug Discovery Using Synthetic Lethality
More than 90 targeted cancer therapies have been developed for nearly 30 types of cancer [], most of which are small molecules or antibodies that target gain-of-function mutations in oncogenes. However, in contrast, it remains difficult to restore the function of proteins encoded by inactivated tumor suppressor genes, as strategies that directly target loss-of-function mutations must target misfolded or partially missing proteins or proteins that are expressed or knocked out []. Such a challenge hampers the development of anticancer drugs targeting loss-of-function mutations in tumor suppressor genes []. However, there is optimism that the mechanism of synthetic lethality can be used to overcome this barrier, providing a basis for the identification of genes that exert synthetic lethality with tumor suppressor genes. Recently, the combination of BRCA1/2 mutations observed in breast and ovarian cancer and PARP inhibitors has attracted attention as an example of the clinical application of drugs using the principle of synthetic lethality [,].
Synthetic lethality has been studied in yeast for years because of the ease of genetic modification []. The identification of proteins homologous to yeast in humans, particularly those involved in DNA damage and repair, has led to attempts to use synthetic lethality in cancer treatment []. Furthermore, with the elucidation of the entire genetic sequence of the human genome, it is possible to search for synthetic lethal agents using RNA interference (RNAi) screening methods. Recently, the emergence of CRISPR-based tools and the diversification of methods to facilitate functional genomics have greatly increased the speed and robustness of synthetic lethal target discovery []. Using these techniques, researchers have analyzed the context-specific genetic dependencies identified in genomic screens for loss-of-function cancer cell lines, and found that synthetic lethal interactions are abundant [,].
The results of these analyses are provided to the Cancer Dependency Map (DepMap) [], which is a collaborative project that is building a comprehensive database of new drug targets and biomarker candidates through projects such as Project Achilles [], Project DRIVE (Novartis) [], and Project Score (Sanger Institute) [,], all of which are also contributing data to DepMap []. Importantly, the resources generated using this large-scale targeted discovery approach have enabled the characterization of genetic interaction networks and the identification of synthetic lethal cancer targets with a potential drug efficacy [,].
5. Synthetic Lethality and Ferroptosis
A definition of ferroptosis is “cell death by synthetic lethality due to increased RAS activity and ROS”; it was originally discovered during the screening of drugs sensitive to RAS mutant cells []. Ferroptosis-related substances are new targets of research and have attracted much attention because of several properties, such as (i) susceptibility in sarcomas and tumors after epithelial−mesenchymal transition, which are resistant to conventional anticancer drugs and molecular targeted drugs []; (ii) susceptibility to cancer stem cells []; and (iii) CD8+ T cells activated by immune checkpoint inhibitors that induce ferroptosis in some types of cancer cells []. In this review, we introduce and discuss reports of synthetic lethal studies on ferroptosis-related substances reported to date.
Among ferroptosis-related substances, we targeted factors that positively regulate ferroptosis, such as TFR1, ACSL4, NCOA4, and VDAC2/3, and factors that negatively regulate ferroptosis, such as GPX4, SLC7A11, FSP1, NRF2 (also known as NFE2L2), HSPB1, and HSPA5. A PubMed search using these keywords, plus “Ferroptosis,” yielded 36 results (retrieved on 22 May 2021). Of these 36 articles, we excluded three review articles and 14 articles on the basis that the terms were only briefly mentioned in the preamble or discussion, resulting in the inclusion of 19 articles in this review. Focusing on the genes related to synthetic lethality, specific search method, clinical application stage, and problems in drug discovery in each study, we examined ferroptosis-related molecules as potential therapeutic targets. The approval status of the drugs can be found in the KEGG DRUG database (accessed on 22 May 2021. https://www.genome.jp/kegg/drug/).
6. Synthetic Lethality and Ferroptosis—Related to RAS Mutation
Several studies focusing on RAS mutant cells marked the beginning of the discovery of ferroptosis [,,,,,] (Table 3). Although gain-of-function mutations in RAS occur in RAS mutant cells, it is unproven whether they directly result in synthetic lethality, as described in the synthetic lethality scenario (3), and the genetic or metabolic abnormalities that occur in RAS mutant cells are unknown. However, in the cellular environment caused by gain-of-function mutations in RAS or in a state of dependence on a specific gene, if pharmacological or genetic mutation manipulation causes ferroptosis, it falls under the four synthetic lethality scenarios described above [,].
Table 3.
Synthetic Lethality and Regulators of Ferroptosis.
The research group of Yang et al., considered pioneers in ferroptosis research, attempted to identify common central regulators for lethality of the ferroptosis inducers RSL3 [], ML162, and DP110 [], as well as other small molecules identified using high-throughput synthetic lethal-screening methods against immortalized cells of mutant RAS (HRAS G12V)-expressing BJ fibroblasts. They attempted to identify a common central regulator of the lethality of ferroptosis-inducing small molecules [,]. Using standardized metabolomics profiling, they identified a group of compounds that cause glutathione depletion and discovered that these compounds inactivate members of the GPX family. Based on findings from the GPX4 overexpression and knockdown experiments, they identified 12 ferroptosis-inducing factors and confirmed they are different from other RCDs in cell death. Additionally, two major ferroptosis-inducing factors, erastin and RSL3, prevented tumor growth in a xenograft mouse tumor model, and sensitivity profiling of 117 cancer cell lines showed that diffuse large B-cell lymphoma and renal cell carcinoma were highly sensitive to GPX4-modulated ferroptosis. They also found that cancer cell lines with RAS mutations were not selectively lethal to erastin-induced ferroptosis in RAS wild-type cell lines, indicating that although RAS mutations increase susceptibility to ferroptosis, other factors are involved in ferroptosis susceptibility.
Chio et al. [] showed that NRF2 is required for the maintenance of pancreatic cancer growth by regulating mRNA translation, based on the finding that mutant KRAS causes Nrf2, a key regulator of redox, to induce pancreatic and lung carcinogenesis []. Furthermore, they found that NRF2 deficiency resulted in defective autocrine epidermal growth factor receptor (EGFR) signaling and oxidation of specific translational regulatory proteins, thereby leading to impaired cap-dependent and cap-independent mRNA translation in pancreatic cancer cells. Treatment with both MK2206 and L-buthionine-(S, R)-sulfoximine (BSO), which inhibit the EGFR effector AKT and glutathione synthase, respectively, mimicked the NRF2 depletion state and potently inhibited pancreatic cancer growth in KRAS- and TP53-mutated Suit2 PDA cell line and mouse models. Although these findings reveal a promising synthetic lethal strategy for disease treatment, it is not known whether the observed synthetic lethality is ferroptosis.
In contrast, Kwon et al. also elucidated the activity of transcription factors such as NRF2 and AhR, which is a molecular biomarker of erastin-dependent ferroptosis, in a human lung cancer cell model. They constructed a nuclear receptor metapathway (NRM) model, integrating the gene expression of the NRM, and announced that this pharmacogenomic approach predicts erastin sensitivity even in unknown cell lines [].
Hu et al. [] performed metabolomic analysis to elucidate the metabolic vulnerability of KRAS-mutated lung adenocarcinoma to treatment and reported that the SLC7A11/glutathione pathway exhibits oncogenic KRAS and metabolic synthetic lethality. Their analysis revealed that when KRAS is activated by mutations, intracellular cystine levels and glutathione biosynthesis are markedly increased. In addition, SLC7A11, a cystine/glutamate antiporter that specifically uptakes cystine, was overexpressed in patients with KRAS-mutated lung adenocarcinoma and positively associated with tumor progression. Furthermore, genetic deletion of SLC7A11 or pharmacological inhibition with sulfasalazine (SAS) selectively killed KRAS mutant cancer cells in vitro and inhibited tumor growth in vivo, suggesting the functionality and specificity of SLC7A11 as a therapeutic target. They also screened the inhibitory effects of certain compounds on glutathione production in 549 cell types, and found that a series of chemicals with a benzotriazole skeleton caused a marked decrease in glutathione production, from which they identified the potent SLC7A11 inhibitor HG106. Specifically, they discovered that HG106 markedly reduced cystine uptake and intracellular glutathione biosynthesis, exhibited selective cytotoxicity against KRAS mutant cells, and increased oxidative and endoplasmic reticulum stress-mediated cell apoptosis (mitochondrial swelling was confirmed by transmission electron microscopy). Although this SLC7A11 inhibitor is a ferroptosis inducer, its effect on autophagy and ferroptosis was concluded to be negative based on LC3 protein measurement, which is an indicator of autophagy, and iron chelator deferoxamine administration experiments. Furthermore, the treatment of KRAS-mutated lung adenocarcinoma with HG106 in several preclinical lung cancer mouse models resulted in marked tumor suppression and prolonged survival. These results indicate that KRAS mutant lung adenocarcinoma cells are vulnerable to SLC7A11 inhibition; however, as HG106 is not an approved drug from the United States Food and Drug Administration (FDA), efforts shifted toward SAS as it is FDA approved.
Sugiyama et al. [] investigated the effect of the xCT inhibitor SAS on the cytotoxicity of paclitaxel-sensitive and -resistant uterine serous carcinoma cell lines. The increased production of ROS and the activation of the c-Jun N-terminal kinase (JNK) pathway, a downstream target of the RAS signaling pathway, in paclitaxel-resistant cells indicated that the synthetic lethal interaction between ROS accumulation and RAS effector JNK pathway activation is important for enhancing susceptibility to the xCT inhibitor SAS. In turn, SAS is important for enhancing susceptibility to xCT-mediated ferroptosis. In this study, immunoblotting analysis and cell death assay using a ferroptosis inhibitor showed that SAS-induced cell death is not apoptosis but ferroptosis.
8. Challenges and Problems
Applying the concept of synthetic lethality to cancer therapy is very promising because it approaches mechanisms and genetic abnormalities that cannot be directly targeted by conventional therapeutic strategies (i.e., RAS mutations, hypoxia, and abnormalities in the metabolic environment). Furthermore, synthetic lethality targets the environment and conditions specific to malignant cells, and exhibits a low toxicity to normal cells [,,]. However, more than 20 years after synthetic lethal strategies were proposed as targets for new anticancer drugs [], their practical applications remain limited [,], in large part because genetic interactions in synthetic lethality are, by definition, lethal, making it difficult to recover and identify mutants, and because many synthetic lethality interactions are condition-dependent, and therefore are not always easy to reproduce [].
Previous studies have described the efficacy of drugs already in clinical use, such as SAS [], vitamin C, and mitomycin C, and drugs used in clinical trials like APR-246, as well as the efficacy of combinations of first-line drugs (cytarabine/ara-C and doxorubicin/adriamycin) and erastin for remission induction therapy in AML []. However, the efficacy of combinations of first-line drugs (cytarabine/ara-C and doxorubicin/adriamycin) with erastin in the induction of AML remission was also evaluated []; however, most of the substances described are at the preclinical stage. Erastin and its analogs have been investigated in several clinical trials, but the results have not been satisfactory [,]. There is also the issue that compounds like RSL3 have a low bioavailability [].
Furthermore, as a mechanism of cell death, ferroptosis has only been recently reported, and much work remains to enable the targeting of these pathways for cancer treatment. Although some studies have reported that nonferroptotic cell death occurred with a ferroptosis inducer [,,], others reported either an overlap of apoptosis and ferroptosis [] or mixed cell death with ferroptosis, apoptosis, and autophagy []. These findings of cross-linkage between ferroptosis and other types of cell death need further clarification to effectively distinguish ferroptosis from other types of cell death in the future []. Ferroptosis can be described as a sensitive and context-dependent form of cell death, a definition that is neither simple to verify nor follow up. Morphological changes observed by electron microscopy, cell death induced by ferroptosis-inducing agents, inhibition of cell death by ferroptosis inhibitors, accumulation of lipid peroxides, and an increase in divalent iron ions are some of the methods used to demonstrate that cells are ferroptotic.
9. Prospects for Synthetic Lethal Strategies Using Ferroptosis
Ferroptosis is a type of cell death that is closely related to the cellular environment, such as oxidative stress and metabolic abnormalities, and is inherently compatible with synthetic lethal strategies. The advantage of a synthetic lethal strategy is that new drug effects are expected when combined with existing approved drugs. In addition to SAS, vitamin C, mitomycin C, and DMF, all of which are currently approved drugs for use in vivo, other drugs such as geldanamycin-derived compounds (17-DMAG, IPI-504, and 17-AAG) and APR-246 are still at the clinical trial stage. There are also expectations for the clinical application of erastin and its analogs, whose efficacy has yet to be confirmed in clinical trials. A novel compound consisting of a tumor-targeting molecule bound to an erastin analog dramatically increased cell death via ferroptosis in a pancreatic cancer model; it was markedly more potent than erastin at inducing ROS production and ferroptosis []. Additionally, erastin analogs developed by introducing reactive carbonyls were found to greatly improve the potency, solubility, and metabolic stability of erastin compounds []. Future research is expected to further elucidate the drugs and their combinations that can be effectively used in vivo.
Author Contributions
All of the authors have written and revised the manuscript. Y.K., T.T. and K.Y. made the figures. All authors have read and agreed to the published version of the manuscript.
Funding
No funding was received for this study.
Institutional Review Board Statement
Not applicable.
Informed Consent Statement
Not applicable.
Data Availability Statement
No data were used in this review.
Conflicts of Interest
No conflicts of interest to declare.
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