Functional Characterization of RNA Silencing Suppressor P0 from Pea Mild Chlorosis Virus
Abstract
:1. Introduction
2. Results
2.1. P0PM Suppressed Local but Not Systemic RNA Silencing
2.2. Requirement of N- and C-Terminal Amino Acids of P0PM for Suppressor Activity
2.3. Critical Residues in P0PM Motifs Were Required for Suppressor Activity
2.4. P0PM Failed to Interact with SKP1 in Yeast
2.5. AGO1 Protein Destabilization Triggered by P0PM Was Correlated with Suppressor Activity
3. Discussion
4. Materials and Methods
4.1. Plant Material and Growth Conditions
4.2. Plasmid Constructs
4.3. Agrobacterium-Mediated Transient Expression and GFP Imaging
4.4. Yeast Two-Hybrid (Y2H) Assay
4.5. Protein Extraction and Western Blots
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Abbreviations
AGO | ARGONAUTE |
BMYV | Beet mild yellowing virus |
BrYV | Brassica yellows virus |
CABYV | Cucurbit aphid-borne yellows virus |
CLRDV | Cotton leafroll dwarf virus |
CYDV | Cereal yellow dwarf virus |
MABYV | Melon aphid-borne yellow virus |
MaYMV | Maize yellow mosaic virus |
MYDV | Maize yellow dwarf virus |
PMCV | Pea mild chlorosis virus |
PLRV | Potato leafroll virus |
ScYLV | Sugarcane yellow leaf virus |
TBSV | Tomato bushy stunt virus |
VSRs | Viral suppressors of RNA silencing |
References
- Blevins, T.; Rajeswaran, R.; Shivaprasad, P.V.; Beknazariants, D.; Si-Ammour, A.; Park, H.S.; Vazquez, F.; Robertson, D.; Meins, F.; Hohn, T.; et al. Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 2006, 34, 6233–6246. [Google Scholar] [CrossRef] [Green Version]
- Deleris, A.; Gallego-Bartolome, J.; Bao, J.; Kasschau, K.D.; Carrington, J.C.; Voinnet, O. Hierarchical action and inhibition of plant dicer-like proteins in antiviral defense. Science 2006, 313, 68–71. [Google Scholar] [CrossRef] [PubMed]
- Zhang, X.; Niu, D.; Carbonell, A.; Wang, A.; Lee, A.; Tun, V.; Wang, Z.; Carrington, J.C.; Chang, C.E.A.; Jin, H. ARGONAUTE PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis. Nat. Commun. 2014, 5, 5468. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Dzianott, A.; Sztuba-Solinska, J.; Bujarski, J.J. Mutations in the antiviral RNAi defense pathway modify Brome mosaic virus RNA recombinant profiles. Mol. Plant. Microbe Interact. 2012, 25, 97–106. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- García-Ruíz, H.; Carbonell, A.; Hoyer, J.S.; Fahlgren, N.; Gilbert, K.B.; Takeda, A.; Giampetruzzi, A.; Ruiz, M.T.G.; McGinn, M.G.; Lowery, N.V.; et al. Roles and programming of arabidopsis ARGONAUTE proteins during turnip mosaic virus infection. PLoS Pathog. 2015, 11, e1004755. [Google Scholar] [CrossRef]
- Carbonell, A.; Fahlgren, N.; Garcia-Ruiz, H.; Gilbert, K.B.; Montgomery, T.A.; Nguyen, T.; Cuperus, J.T.; Carrington, J.C. Functional analysis of three arabidopsis ARGONAUTES using slicer-defective mutants. Plant. Cell 2012, 24, 3613–3629. [Google Scholar] [CrossRef] [Green Version]
- Ghoshal, B.; Sanfaçon, H. Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1. Virology 2014, 456, 188–197. [Google Scholar] [CrossRef] [Green Version]
- Mourrain, P.; Béclin, C.; Elmayan, T.; Feuerbach, F.; Godon, C.; Morel, J.B.; Jouette, D.; Lacombe, A.M.; Nikic, S.; Picault, N.; et al. Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 2000, 101, 533–542. [Google Scholar] [CrossRef] [Green Version]
- Vazquez, F.; Vaucheret, H.; Rajagopalan, R.; Lepers, C.; Gasciolli, V.; Mallory, A.C.; Hilbert, J.L.; Bartel, D.P.; Crété, P. Endogenous trans-acting siRNAs regulate the accumulation of arabidopsis mRNAs. Mol. Cell 2004, 16, 69–79. [Google Scholar] [CrossRef]
- Schwach, F.; Vaistij, F.E.; Jones, L.; Baulcombe, D.C. An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant. Physiol. 2005, 138, 1842–1852. [Google Scholar] [CrossRef] [Green Version]
- Wang, X.B.; Jovel, J.; Udomporn, P.; Wang, Y.; Wu, Q.; Li, W.X.; Gasciolli, V.; Vaucheret, H.; Ding, S.W. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in arabidopsis thaliana. Plant. Cell 2011, 23, 1625–1638. [Google Scholar] [CrossRef] [Green Version]
- Diaz-Pendon, J.A.; Li, F.; Li, W.X.; Ding, S.W. Suppression of antiviral silencing by cucumber mosaic virus 2b protein in arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant. Cell 2007, 19, 2053–2063. [Google Scholar] [CrossRef] [Green Version]
- Donaire, L.; Barajas, D.; Martínez, B.; Martínez-Priego, L.; Pagán, I.; Llave, C. Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs. J. Virol. 2008, 82, 5167–5177. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Garcia-Ruiz, H.; Takeda, A.; Chapman, E.J.; Sullivan, C.M.; Fahlgren, N.; Brempelis, K.J.; Carrington, J.C. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during turnip mosaic virus infection. Plant. Cell 2010, 22, 481–496. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Wu, Q.; Wang, X.; Ding, S.W. Viral suppressors of RNA-based viral immunity: Host targets. Cell Host Microbe 2010, 8, 12–15. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Diaz-Pendon, J.A.; Ding, S.W. Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu. Rev. Phytopathol. 2008, 46, 303–326. [Google Scholar] [CrossRef] [PubMed]
- Burgyán, J.; Havelda, Z. Viral suppressors of RNA silencing. Trends Plant. Sci. 2011, 16, 265–272. [Google Scholar] [CrossRef]
- Incarbone, M.; Dunoyer, P. RNA silencing and its suppression: Novel insights from in planta analyses. Trends Plant. Sci. 2013, 18, 382–392. [Google Scholar] [CrossRef]
- Pumplin, N.; Voinnet, O. RNA silencing suppression by plant pathogens: Defence, counter-defence and counter-counter-defence. Nat. Rev. Genet. 2013, 11, 745–760. [Google Scholar] [CrossRef]
- Goto, K.; Kobori, T.; Kosaka, Y.; Natsuaki, T.; Masuta, C. Characterization of silencing suppressor 2b of cucumber mosaic virus based on examination of its small RNA-binding abilities. Plant. Cell Physiol. 2007, 48, 1050–1060. [Google Scholar] [CrossRef] [Green Version]
- Merai, Z.; Kerényi, Z.; Kertész, S.; Magna, M.; Lakatos, L.; Silhavy, D. Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing. J. Virol. 2006, 80, 5747–5756. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Vargason, J.M.; Szittya, G.; Burgyán, J.; Hall, T.M.T. Size selective recognition of siRNA by an RNA silencing suppressor. Cell 2003, 115, 799–811. [Google Scholar] [CrossRef] [Green Version]
- Ye, K.; Malinina, L.; Patel, D.J. Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nature 2003, 426, 874–878. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Silhavy, D.; Molnár, A.; Lucioli, A.; Szittya, G.; Hornyik, C.; Tavazza, M.; Burgyán, J. A viral protein suppresses RNA silencing and binds silencing-generated, 21- to 25-nucleotide double-stranded RNAs. EMBO J. 2002, 21, 3070–3080. [Google Scholar] [CrossRef] [PubMed]
- Glick, E.; Zrachya, A.; Levy, Y.; Mett, A.; Gidoni, D.; Belausov, E.; Citovsky, V.; Gafni, Y. Interaction with host SGS3 is required for suppression of RNA silencing by tomato yellow leaf curl virus V2 protein. Proc. Natl. Acad. Sci. USA 2007, 105, 157–161. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Haas, G.; Azevedo, J.; Moissiard, G.; Geldreich, A.; Himber, C.; Bureau, M.; Fukuhara, T.; Keller, M.; Voinnet, O. Nuclear import of CaMV P6 is required for infection and suppression of the RNA silencing factor DRB4. EMBO J. 2008, 27, 2102–2112. [Google Scholar] [CrossRef] [Green Version]
- Zhang, X.; Yuan, Y.R.; Pei, Y.; Lin, S.S.; Tuschl, T.; Patel, D.J.; Chua, N.H. Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev. 2006, 20, 3255–3268. [Google Scholar] [CrossRef] [Green Version]
- Azevedo, J.; Garcia, D.; Pontier, D.; Ohnesorge, S.; Yu, A.; Garcia, S.; Braun, L.; Bergdoll, M.; Hakimi, M.A.; Lagrange, T.; et al. Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein. Genes Dev. 2010, 24, 904–915. [Google Scholar] [CrossRef] [Green Version]
- Chiu, M.H.; Chen, I.H.; Baulcombe, D.C.; Tsai, C.H. The silencing suppressor P25 of Potato virus X interacts with Argonaute1 and mediates its degradation through the proteasome pathway. Mol. Plant. Pathol. 2010, 11, 641–649. [Google Scholar] [CrossRef]
- Karran, R.A.; Sanfaçon, H. Tomato ringspot virus coat protein binds to ARGONAUTE 1 and suppresses the translation repression of a reporter gene. Mol. Plant. Microbe Interact. 2014, 27, 933–943. [Google Scholar] [CrossRef] [Green Version]
- Baumberger, N.; Tsai, C.H.; Lie, M.; Havecker, E.; Baulcombe, D.C. The polerovirus silencing suppressor P0 targets ARGONAUTE proteins for degradation. Curr. Biol. 2007, 17, 1609–1614. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Bortolamiol, D.; Pazhouhandeh, M.; Marrocco, K.; Genschik, P.; Ziegler-Graff, V. The polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr. Biol. 2007, 17, 1615–1621. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Csorba, T.; Lózsa, R.; Hutvágner, G.; Burgyán, J. Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1. Plant. J. 2010, 62, 463–472. [Google Scholar] [CrossRef] [PubMed]
- Derrien, B.; Baumberger, N.; Schepetilnikov, M.; Viotti, C.; De Cillia, J.; Ziegler-Graff, V.; Isono, E.; Schumacher, K.; Genschik, P. Degradation of the antiviral component ARGONAUTE1 by the autophagy pathway. Proc. Natl. Acad. Sci. USA 2012, 109, 15942–15946. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Pazhouhandeh, M.; Dieterle, M.; Marrocco, K.; Lechner, E.; Berry, B.; Brault, V.; Hemmer, O.; Kretsch, T.; Richards, K.E.; Genschik, P.; et al. F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function. Proc. Natl. Acad. Sci. USA 2006, 103, 1994–1999. [Google Scholar] [CrossRef] [Green Version]
- Pfeffer, S.; Dunoyer, P.; Heim, F.; Richards, K.E.; Jonard, G.; Ziegler-Graff, V. P0 of beet western yellows virus is a suppressor of posttranscriptional gene silencing. J. Virol. 2002, 76, 6815–6824. [Google Scholar] [CrossRef] [Green Version]
- Taliansky, M.; Mayo, M.A.; Barker, H. Potato leafroll virus: A classic pathogen shows some new tricks. Mol. Plant. Pathol. 2003, 4, 81–89. [Google Scholar] [CrossRef]
- Stevens, M.; Freeman, B.; Liu, H.Y.; Herrbach, E.; Lemaire, O. Beet poleroviruses: Close friends or distant relatives? Mol. Plant. Pathol. 2005, 6, 1–9. [Google Scholar] [CrossRef] [Green Version]
- Mangwende, T.; Wang, M.L.; Borth, W.; Hu, J.; Moore, P.H.; Mirkov, T.E.; Albert, H.H. The P0 gene of Sugarcane yellow leaf virus encodes an RNA silencing suppressor with unique activities. Virology 2009, 384, 38–50. [Google Scholar] [CrossRef] [Green Version]
- Han, Y.H.; Xiang, H.Y.; Wang, Q.; Li, Y.Y.; Wu, W.Q.; Han, C.G.; Li, D.; Yu, J. Ring structure amino acids affect the suppressor activity of melon aphid-borne yellows virus P0 protein. Virology 2010, 406, 21–27. [Google Scholar] [CrossRef] [Green Version]
- Kozlowska-Makulska, A.; Guilley, H.; Szyndel, M.S.; Beuve, M.; Lemaire, O.; Herrbach, E.; Bouzoubaa, S. P0 proteins of European beet-infecting poleroviruses display variable RNA silencing suppression activity. J. Gen. Virol. 2009, 91, 1082–1091. [Google Scholar] [CrossRef]
- Delfosse, V.C.; Agrofoglio, Y.; Casse, M.F.; Kresic, I.B.; Hopp, H.E.; Ziegler-Graff, V.; Distéfano, A.J. The P0 protein encoded by cotton leafroll dwarf virus (CLRDV) inhibits local but not systemic RNA silencing. Virus Res. 2014, 180, 70–75. [Google Scholar] [CrossRef]
- Zhuo, T.; Li, Y.Y.; Xiang, H.Y.; Wu, Z.Y.; Wang, X.B.; Wang, Y.; Zhang, Y.; Li, D.; Yu, J.L.; Han, C.G. Amino acid sequence motifs essential for P0-mediated suppression of RNA silencing in an isolate of potato leafroll virus from inner mongolia. Mol. Plant. Microbe Interact. 2014, 27, 515–527. [Google Scholar] [CrossRef] [PubMed]
- Chen, S.; Jiang, G.; Wu, J.; Liu, Y.; Qian, Y.; Zhou, X. Characterization of a novel polerovirus infecting maize in China. Viruses 2016, 8, 120. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Wang, F.; Zhao, X.; Dong, Q.; Zhou, B.; Gao, Z. Characterization of an RNA silencing suppressor encoded by maize yellow dwarf virus-RMV2. Virus Genes 2018, 54, 570–577. [Google Scholar] [CrossRef] [PubMed]
- Li, Y.Y.; Sun, Q.; Zhao, T.; Xiang, H.; Zhang, X.; Wu, Z.; Zhou, C.; Zhang, X.; Wang, Y.; Zhang, Y.; et al. Interaction between Brassica yellows virus silencing suppressor P0 and plant SKP1 facilitates stability of P0 in vivo against degradation by proteasome and autophagy pathways. New Phytol. 2019, 222, 1458–1473. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Liu, Y.; Zhai, H.; Zhao, K.; Wu, B.; Wang, X. Two suppressors of RNA silencing encoded by cereal-infecting members of the family Luteoviridae. J. Gen. Virol. 2012, 93, 1825–1830. [Google Scholar] [CrossRef] [PubMed]
- Fusaro, A.F.; Corrêa, R.L.; Nakasugi, K.; Jackson, C.; Kawchuk, L.M.; Vaslin, M.F.; Waterhouse, P.M. The Enamovirus P0 protein is a silencing suppressor which inhibits local and systemic RNA silencing through AGO1 degradation. Virology 2012, 426, 178–187. [Google Scholar] [CrossRef]
- Almasi, R.; Miller, W.A.; Ziegler-Graff, V.; Vachon, V.K.; Conn, G.L. Mild and severe cereal yellow dwarf viruses differ in silencing suppressor efficiency of the P0 protein. Virus Res. 2015, 208, 199–206. [Google Scholar] [CrossRef] [PubMed]
- Zhou, C.J.; Xiang, H.Y.; Zhuo, T.; Li, D.; Yu, J.L.; Han, C.G. Nucleotide sequence of a chickpea chlorotic stunt virus relative that infects pea and faba bean in China. Arch. Virol. 2012, 157, 1393–1396. [Google Scholar] [CrossRef]
- Johansen, L.K. Silencing on the spot. Induction and suppression of RNA silencing in the agrobacterium-mediated transient expression system. Plant. Physiol. 2001, 126, 930–938. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Ruiz, M.T.; Voinnet, O.; Baulcombe, D.C. Initiation and maintenance of virus-induced gene silencing. Plant Cell 1998, 10, 937–946. [Google Scholar] [CrossRef] [PubMed]
- Goodin, M.; Dietzgen, R.G.; Schichnes, D.; Ruzin, S.; Jackson, A.O. pGD vectors: Versatile tools for the expression of green and red fluorescent protein fusions in agroinfiltrated plant leaves. Plant. J. 2002, 31, 375–383. [Google Scholar] [CrossRef] [PubMed]
- Voinnet, O.; Rivas, S.; Mestre, P.; Baulcombe, D. An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant. J. 2003, 33, 949–956. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Rashid, M.; Zhang, X.Y.; Wang, Y.; Li, D.; Yu, J.L.; Han, C.G. The three essential motifs in P0 for suppression of RNA silencing activity of potato leafroll virus are required for virus systemic infection. Viruses 2019, 11, 170. [Google Scholar] [CrossRef] [Green Version]
- Wang, K.D.; Empleo, R.; Nguyen, T.T.V.; Moffett, P.; Sacco, M.A. Elicitation of hypersensitive responses in Nicotiana glutinosa by the suppressor of RNA silencing protein P0 from poleroviruses. Mol. Plant Pathol. 2015, 16, 435–448. [Google Scholar] [CrossRef]
- Wang, Q.; Tao, T.; Han, Y.H.; Chen, X.R.; Fan, Z.; Li, D.; Yu, J.L.; Han, C.G. Nonstructural protein P7-2 encoded by Rice black-streaked dwarf virus interacts with SKP1, a core subunit of SCF ubiquitin ligase. Virol. J. 2013, 10, 325. [Google Scholar] [CrossRef] [Green Version]
- Holsters, M.; De Waele, D.; Depicker, A.; Messens, E.; Van Montagu, M.; Schell, J. Transfection and transformation of Agrobacterium tumefaciens. Mol. Gen. Genet. 1978, 163, 181–187. [Google Scholar] [CrossRef]
- Sun, Q.; Li, Y.Y.; Wang, Y.; Zhao, H.H.; Zhao, T.Y.; Zhang, Z.Y.; Li, D.; Yu, J.L.; Wang, X.; Zhang, Y.L.; et al. Brassica yellows virus P0 protein impairs the antiviral activity of NbRAF2 in Nicotiana benthamiana. J. Exp. Bot. 2018, 69, 3127–3139. [Google Scholar] [CrossRef]
Primer | Sequence (5′–3′) |
P0XhoF | TATCTCGAGATGAACGTGTTAATC |
P0TGA-ApaR | TATGGGCCCTCATAGCTCCCAAAACCCTTCG |
P0ApaR | TATGGGCCCTAGCTCCCAAAACCCTTCG |
Δ2XhoF | TATCTCGAGATGGTGTTAATCAATCAATACAC |
Δ3XhoF | TATCTCGAGATGAACTTAATCAATCAAT |
Δ229-270TGAR | CGGGATCCGGGCCCTCAAAGCTCCCAAATATCAGATG |
Δ229-270-R | TATGGGCCCAAGCTCCCAA ATATCAGATG |
Primer | Sequence (5′-3′) |
Δ230-270TGAR | CGGGATCCGGGCCCTCAGAAAAGCTCCCAAATATCAG |
Δ230-270-R | TATGGGCCCGAAAAGCTCC CAAATATCAG |
LP-F | GCCGCTTTTCTATTCGGGGGCTTC |
LP-R | CAAAAGCAGAAGAGAGCGATAGC |
LPP-F | TTACACGGGAGTAACCG |
LPP-R | GCGGGCGATGACCAGTTG |
I225R-F | GATAGGTGGGAGCTTTTCGGT |
I225R-R | AGATGTAAGAGCTTTGCCGTAG |
W226R-F | GATATTAGGGAGCTTTTCGGT |
P0NdeF | TATCATATGAACGTGTTAATC |
P0BamHR | TATGGATCCTCATAGCTCCCAAAACCCTTCG |
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Sun, Q.; Zhuo, T.; Zhao, T.; Zhou, C.; Li, Y.; Wang, Y.; Li, D.; Yu, J.; Han, C. Functional Characterization of RNA Silencing Suppressor P0 from Pea Mild Chlorosis Virus. Int. J. Mol. Sci. 2020, 21, 7136. https://doi.org/10.3390/ijms21197136
Sun Q, Zhuo T, Zhao T, Zhou C, Li Y, Wang Y, Li D, Yu J, Han C. Functional Characterization of RNA Silencing Suppressor P0 from Pea Mild Chlorosis Virus. International Journal of Molecular Sciences. 2020; 21(19):7136. https://doi.org/10.3390/ijms21197136
Chicago/Turabian StyleSun, Qian, Tao Zhuo, Tianyu Zhao, Cuiji Zhou, Yuanyuan Li, Ying Wang, Dawei Li, Jialin Yu, and Chenggui Han. 2020. "Functional Characterization of RNA Silencing Suppressor P0 from Pea Mild Chlorosis Virus" International Journal of Molecular Sciences 21, no. 19: 7136. https://doi.org/10.3390/ijms21197136
APA StyleSun, Q., Zhuo, T., Zhao, T., Zhou, C., Li, Y., Wang, Y., Li, D., Yu, J., & Han, C. (2020). Functional Characterization of RNA Silencing Suppressor P0 from Pea Mild Chlorosis Virus. International Journal of Molecular Sciences, 21(19), 7136. https://doi.org/10.3390/ijms21197136