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Biochemical Characterization of a Carboxylesterase from the Archaeon Pyrobaculum sp. 1860 and a Rational Explanation of Its Substrate Specificity and Thermostability

Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
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Int. J. Mol. Sci. 2014, 15(9), 16885-16910; https://doi.org/10.3390/ijms150916885
Received: 3 July 2014 / Revised: 20 August 2014 / Accepted: 11 September 2014 / Published: 23 September 2014
(This article belongs to the Section Biochemistry)
In this work, genome mining was used to identify esterase/lipase genes in the archaeon Pyrobaculum sp. 1860. A gene was cloned and functionally expressed in Escherichia coli as His-tagged protein. The recombinant enzyme (rP186_1588) was verified by western blotting and peptide mass fingerprinting. Biochemical characterization revealed that rP186_1588 exhibited optimum activity at pH 9.0 and 80 °C towards p-nitrophenyl acetate (Km: 0.35 mM, kcat: 11.65 s−1). Interestingly, the purified rP186_1588 exhibited high thermostability retaining 70% relative activity after incubation at 90 °C for 6 h. Circular dichroism results indicated that rP186_1588 showed slight structure alteration from 60 to 90 °C. Structural modeling showed P186_1588 possessed a typical α/β hydrolase’s fold with the catalytic triad consisting of Ser97, Asp147 and His172, and was further confirmed by site-directed mutagenesis. Comparative molecular simulations at different temperatures (300, 353, 373 and 473 K) revealed that its thermostability was associated with its conformational rigidity. The binding free energy analysis by MM-PBSA method revealed that the van der Waals interaction played a major role in p-NP ester binding for P186_1588. Our data provide insights into the molecular structures of this archaeal esterase, and may help to its further protein engineering for industrial applications. View Full-Text
Keywords: carboxylesterase; thermostability; structure modeling; docking; molecular dynamics carboxylesterase; thermostability; structure modeling; docking; molecular dynamics
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MDPI and ACS Style

Shao, H.; Xu, L.; Yan, Y. Biochemical Characterization of a Carboxylesterase from the Archaeon Pyrobaculum sp. 1860 and a Rational Explanation of Its Substrate Specificity and Thermostability. Int. J. Mol. Sci. 2014, 15, 16885-16910. https://doi.org/10.3390/ijms150916885

AMA Style

Shao H, Xu L, Yan Y. Biochemical Characterization of a Carboxylesterase from the Archaeon Pyrobaculum sp. 1860 and a Rational Explanation of Its Substrate Specificity and Thermostability. International Journal of Molecular Sciences. 2014; 15(9):16885-16910. https://doi.org/10.3390/ijms150916885

Chicago/Turabian Style

Shao, Hua, Li Xu, and Yunjun Yan. 2014. "Biochemical Characterization of a Carboxylesterase from the Archaeon Pyrobaculum sp. 1860 and a Rational Explanation of Its Substrate Specificity and Thermostability" International Journal of Molecular Sciences 15, no. 9: 16885-16910. https://doi.org/10.3390/ijms150916885

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