2.1. N3-Substituted Derivatives
Goncalves et al. [
2] emphasize the ability of monastrol, a DHPM structure, to inhibit kinase Eg5 and making a most promising anticancer agent. They studied the role that the substitution on N3 plays in the anticancer activity of a DHPM structure. They used a library of already published DHPM [
14] and studied a series of 18 monastrol analogues (entries 1–18) (
Figure 6) intending to find the substituents enhancing the anticancer activity of DHPMs. The novel derivatives have been evaluated for their cytotoxic effect on glioma cell lines U-138 using monastrol as the standard drug. From the 18 derivatives, only 3 compounds have shown better activity than the reference drug. From screening on glioma cell lines, the most potent derivatives were compounds
8,
12, and
16 presenting 80%, 82%, and 81% inhibition, respectively, in a concentration of 150 μΜ.
It can be concluded that N3 phenyl substitution generally increases the cytotoxic effect compared with monastrol. To be more specific, electronegative groups at the meta and para position improve their ability. This can be attributed to the bulky atoms filling the P3 pocket of the enzyme Eg5. In addition to this substitution, the -OH group on the para position of the phenyl ring connected to C6 increases the anticancer ability of a compound. These three compounds were further tested for their anticancer activity on bladder cancer cell line T24. Again, in this cell line, these three derivatives proved to be stronger than the standard drug. What was noteworthy was compound 16 that possessed an IC50 = 18.52 ± 7.83 μM, while monastrol’s was IC50 = 262.66 ± 61.63 μM. QSAR studies were in accordance with these results showing that strong cytotoxicity is closely related to bulky and electronegative substituents. The three most efficient derivatives bear a 3OH-phenyl group at C6 and a phenyl ring substituted with an electron withdrawing group at N3. Compounds with no substitution on the phenyl group or 4-OCH3 showed the lowest cytotoxic effect being inactive in terms of QSAR studies. It seems that substituents of the N3-phenyl ring play an important role. They can be categorized from the less active to the strongest one: 4-OCH3 ≈ H ≈ 4 NO2 < 2,6-CH3 < 4-OH < 3-Cl < 4-Cl ≈ 3-CF3 ≈ 4-Br. The molecules have been proven to be safe for the normal cells from in vivo studies on C. elegans with LC50 higher than the needed concentration for cell death, 7.02 ± 1.03 and 4.45 ± 0.99 mM for compounds 12 and 16, respectively, and 2.93 ± 0.25 mM for compound 8. Additionally, DCF-DA assay was conducted on C. elegans where compounds 12 and 16 showed antioxidant activity; compound 12 was the only one that can inhibit the production of ROS in vivo. To further confirm the results regarding the antioxidant ability of a structure, DPPH assay was conducted. Being an in vitro experiment, the specificity is low, and the results cannot be affected by outer factors like when in an in vivo assay.
2.2. C5-Substituted Derivatives/R2 Substituted
Bohlooli et al. [
15]. synthesized a series of dihydropyrimidinethiones (DHPMTs) and acyclic enamino amides by altering the structure of monastrol, which is a well-known Eg5 inhibitor (
Figure 7). The purpose was to possess stronger anticancer effect. DHPMTs’ cytotoxic ability was tested on human gastric (AGS), liver (Hep-G2), and breast (MCF-7) cancer cell lines. Concerning Hep-G2 and MCF-7 cell lines, none of the compounds presented better activity than the standard drug. However, on the AGS cell line assay, structure
23 showed an activity of IC
50 = 9.9 ± 0.3 μΜ, stronger than cisplatin (IC
50 = 11.4 ± 2.9 μΜ), which was used as the reference drug. In general, the two most efficient molecules are compound
23 with IC
50 9.9 ± 0.3, 15.2 ± 0.4, and 40.5 ± 1.0 μΜ for AGS, Hep-G2, MCF-7, respectively, and compound
25 with 23.8 ± 1.1, 25.9 ± 7.2, and 94.2 ± 7.9 μΜ, respectively. Based on the results, it can be concluded that meta substitution with an electron withdrawing group enhances the cytotoxic activity of a compound. This can be probably attributed to the H-bonds developed with Eg5. This can be improved with bulky amide substituents, but very bulky substitution may have the opposite result due to steric hindrance. Additionally, the phenyl group that replaces the ethyl group is responsible for hydrophobic interactions with Eg5. What is noteworthy is that the oxo derivatives were less effective than the sulfur ones, which may be due to the antiproliferative ability that the latter one has.
According to Jiang et al. [
3], the acyl oxygen and secondary amino hydrogen atom of a dihydropyrimidine are essential for Eg5 inhibition since these two atoms are capable of forming three hydrogen bonds with amino acids of the active site. They used solvothermal synthesis, a common synthetic method in inorganic chemistry, to produce DHPM derivatives with very good yields higher than 70%. The derivatives where substituted with either a benzene ring (14 compounds) (
Figure 8) or a pyrrole ring (16 compounds) (
Figure 9). Firstly, the molecules were tested for their ability to inhibit Eg5, especially as ATPase inhibitors. Nine compounds were able to present results in micromolar range concentration with
35 being the strongest one with an activity of 30.25 μΜ and
54 the less active of all with an ATPase activity of 71.86 μΜ, even lower than the one of monastrol 51.74 μΜ. When it comes to the cytotoxic ability of the compounds, the most potent one of all was
35, a DHPM containing a benzene ring, with IC
50 65.80 μΜ (Caco-2 cell), 75.59 μΜ (Hela cell), and 103.21 μΜ (T24 cell). It is worth mentioning that this molecule is a mixed inhibitor with Ki = 15.73 μΜ. To sum up,
35 is a more efficient inhibitor than monastrol for HeLa and Caco-2 cancer cell lines and causes an adequate inhibition of T24 (the cell line of bladder carcinoma). Its cytotoxic effect toward the murine fibroblast L929 cell line was studied showing a moderate cytotoxicity of 85.97 μΜ in a dose-dependent manner. These findings were consistent with the docking studies where
35 was surrounded by active amino acids forming three hydrogen bonds with Asp187, Lys260, and Val194 and possibly having aromatic interactions with Asp322. These results showed that compound
35 presents stronger interactions with Eg5 than monastrol. It is also concluded that the oxo derivatives did not show any anticancer effect, whereas the thio ones had adequate, with
35 being stronger than monastrol.
Prasad et al. [
9]. gathered a diversity of DHPM known for their ability to inhibit Eg5 and can be used to fight breast cancer and performed structure–activity relationships (SARs) on them (
Figure 10). Compounds
57 and
58, which were synthesized by safari [
1], developing hydrophobic and hydrogen interactions were quite strong against breast, liver, and lung cancer lines. Their IC
50 were for compound
57: 74.28 ± 8.81, 74.01 ± 5.39, and 45.85 ± 1.54 μΜ, against MCF-7, HepG3, and A549, respectively; and for compound
58: 65.54 ± 9.06, 73.71 ± 4.26, and 43.97 ± 0.45 μΜ, respectively. From SARs, it seems that at C-6, electron withdrawing groups at the para position enhance cytotoxic activity; however, at C-5, the presence of a phenyl ring at the ester’s position reduces the anticancer ability. Lastly, the thiocarbonyl derivative was proved to be more effective than the carbonyl one.
Regarding HepG2 and HeLa cell line inhibition, structures
59 and
60 (
Figure 11) showed a moderate result, with IC
50 124 and 187 μΜ for
59 and 120 and 217 μΜ for
60, respectively. Replacing the proton with -F at the p-position did not affect the general anticancer potency but increased the inhibition of cell proliferation. The absence of a hydrogen bond on the phenyl ring results in the removal of hydrogen bonds with the amino acid Glu118, which appears to be important for the anticancer activity.
2.3. C6-Substituted Derivatives
Safari et al. [
1] synthesized a series of 6-methyl-2-thioxo-4-phenyl-3,4- dihydropyrimidine-5-benzoate derivatives (
Figure 12) so as to create anticancer agents that will be able to inhibit Eg5. This is based on the fact that the first molecule to be observed inhibiting Eg5 making it an advantageous structure is a DHPM called monastrol. The cytotoxic ability of the compounds was tested on different cancer cell lines. Between the 10 compounds, the most effective was compound
68 with IC
50 65.54, 73.71, and 43.97 μM against MCF-7, HepG-2, and A549, respectively. However, its activity did not surpass the one of doxorubicin, the reference drug. Concerning their safety, normal Huvec cell line was used; all the molecules showed low cytotoxicity. It was noticed that, generally, all the molecules were more effective against the A549 cell line compared with the other ones and that a change in the substitution of the phenyl ring can drastically change the cytotoxic activity. Substitution at the ortho- and meta- position reduced the compound’s anticancer effect in comparison with the para- one, which increased it. For an even better outcome, an electron withdrawing group can be added to the para- position of the phenyl ring. The presence of fluorine in the same position just preserved the anticancer ability of the molecule. Comparing the different ways of substitution on the meta- position, the presence of Br- showed better results than the one with OH-. The interesting fact is that the derivatives with a phenyl ring instead of ethyl ester at C5- were more efficacious than the other ones. Again, thio- derivatives possessed stronger cytotoxic effect than the other ones probably due to the lipophilicity of the first one. Hence, it can be concluded that the two features that can determine the cytotoxicity of a molecule are lipophilicity and electron withdrawing groups. These results matched the docking studies. The most favorable interactions are H-bonds with amino acids Glu116 and Glu118. Compound
68 presented a binding score of −10.31 kcal/mol to Eg5. Docking studies revealed that
68 can possibly interact with Mg
2+ located at the active site of Eg5. Hydrophobic interactions with the above Glu acids were detected. Meanwhile, other compounds like
64 formed hydrogen bonds with Glu118 and hydrophobic interactions with the amino acids of the active site. Compounds
62,
67, and
69 were the ones with the lowest free binding energy probably due to the presence of bulky substituents, causing steric hindrance. From all of the above, it can be concluded that the development of a bond with Mg and the simultaneous interaction of the molecule with both Glu116 and Glu118 can be essential for a strong inhibitory ability.
Hosseinzadeh et al. [
11] express the major role that Eg5 plays in the development and progression of cancer, which makes it a desirable target for combating cancer. Monastrol’s ability to inhibit this enzyme is already known. They have applied the following synthetic procedure (
Figure 13) for the synthesis of DHPM (
Figure 14) and pyridine derivatives (
Figure 15), structures of which are similar to the one of monastrol. To improve the reaction’s condition and yield, they applied SO
3H-substituted silica-coated cobalt-based magnetic nanoparticles as a catalyst and microwave radiation for a faster reaction with high yield and without the need for a solvent (
Figure 13). Then, the newly synthesized compounds were tested for their ability to inhibit the proliferation of three cell lines MCF-7, AGS (cancer cells), and HEK293 (normal cells) that was a result due to their ability as Eg5 inhibitors. The results of preliminary screenings showed that the resulting molecules will be highly cytotoxic and safer (low cytotoxic activity against normal cells). The DHPM derivatives were more efficacious than the pyridine ones. Two structures had quite promising results,
88 and
80. After 48 hr of treating AGS and MCF-7 cells,
88 was able to cause cell death to over 50% of AGS cancer cell lines and, together with
80, showed a remarkable cytotoxic activity against AGS with IC
50 4.9 and 4.97 μΜ, respectively. The stronger effect on the MCF-7 line was also
88 with IC
50 0.17 μΜ. Against MCF-7, compound
83 presented an IC
50 = 128 μΜ higher than the pyridine derivatives. Docking studies were consistent with these results. In general, hydrogen bonds and hydrophobic interactions are essential for inhibitory activity. Compounds
88 and
101 were the ones that possessed the highest free energy binding value of each series, −7.67 and −9.52 kcal/mol, respectively, meaning that they strongly bind to Eg5. For compound
88, this can be attributed to the presence of H-bonds between NH- of the derivative and Glu116 of Eg5 stabilizing the enzyme, whereas for compound
101, to the formation of hydrogen bonds with Glu118 and Glu117.
Hernández et al. [
8] synthesized a series of molecules that are both Eg5 and L-type calcium channel inhibitors (
Figure 16). The latter participated in processes like metastasis, angiogenesis, and avoiding apoptosis and are being overexpressed in cancer cells. Regarding their vasorelaxing ability, three compounds were the most potent with IC
50 ranging from 1.2 to 16 μΜ and compound
103 being stronger than the standard drug nifedipine. The latter one seems to affect the influx of Ca
2+ rather than their intracellular level based on an assay that studied the contractions caused by CaCl
2. Concerning their anticancer activity, the cytotoxicity of the compounds against A-549 and MCF-7 cancer cell lines was evaluated. Again, compound
103 was the most effective one with IC
50 44.9 and 32.2 μΜ for A-549 and MCF-7, respectively, presenting better results than the reference compound monastrol. When monastrol inhibits Eg5, the creation of monopolar spindle in the cell is a characteristic phenomenon that eventually leads to cell death. Thus, it was studied whether this phenomenon would occur or not in order to test if these molecules can inhibit Eg5. Compounds
103 and
104 were observed to increase the amount of monopolar spindle mitosis. It was impressive due to the fact that, in the presence of
103, this phenomenon was 2,5-fold more intense than the negative control.
Khanum et al. [
16] used SiO
2 as a catalyst and produced a set of dihydropyrimidines (
Figure 17) and a set of trihydropyrimidines (
Figure 18) in order to discover the best and stereoselective procedure to synthesize DHPMs. All molecules follow Lipinski’s rule in which five possessed good absorption, four DHPMs can penetrate the BBB, while the others have a proper intestinal absorption. Compound
120 showed potential as an orally administrating agent with physicochemical characteristics similar to the standard drugs monastrol and piperastrol. These two compounds are well known for their ability to inhibit Eg5 and thus being cytotoxic to cancer cells. This compound was also tested for its cytotoxicity. Again, monastrol and piperastrol were used as reference compounds. Compound
120′s anticancer ability was quite promising, with IC
50 of 15.27 and 10.87 μg/mL against MCF-7 and HT-29, respectively, significantly better than monastrol and a little weaker than piperastrol. In addition to its physicochemical characteristic, it can be a promising drug candidate.
2.4. Proline and Cyclized Cysteine Like DHPM
Malik et al. [
17], after highlighting the overexpression of Eg5 to cancer cells and its importance as a target of anticancer agents, modified monastrol, an already known Eg5 inhibitor, with amino acids cysteine and proline with an aim to produce powerful Eg5 inhibitors (
Figure 19). Ten compounds with a substituted phenyl ring at C6 and with an amino acid connected to the ester of C5 were synthesized and tested as inhibitors of Eg5 and anticancer agents indirectly by studying their cytotoxic effect on cancer cell lines. Six of them were studied for their inhibition against 60 different cancer cell lines, whereas the other three were tested on a few specific ones. The majority of the compounds possessed cytotoxicity against CNS, renal cancer, and leukemia. Nevertheless, their ability is moderate to low. Regarding the most effective structure, every compound was effective toward a specific cell line. To elaborate,
131 was the one with the strongest antiproliferative effect concerning SNB-75 cancer cell line, while
125 was the most effective against renal RXF 393 cell line with 36.4% inhibition. Regarding leukemia, the most promising one is
130 with 53.3%, 43.2%, and 27.1% inhibition against SR, HL-60, and RPMI8226 cell lines, respectively. The other three compounds did not show an important anticancer effect; only
131 against colo-205 and
127 on A431 were stronger than monastrol but with moderate IC
50 of 90 mg/mL. Regarding the molecular analysis, the interactions of
129 (cyclized cysteine moiety) and
124 (proline moiety) and monastrol with Eg5 were studied. Compound
124 develops more interactions with the enzyme forming four hydrogen bonds and hydrophobic interactions with fourteen amino acids with a binding energy of −8.11 kcal/mol. On the other hand, structure
129 hydrophobically interacts with thirteen amino acids and develops two hydrogen bonds with binding energy −7.48 kcal/mol. The two derivatives mentioned above were compared with monastrol, and it was concluded that monastrol presents remarkably less interactions with only one hydrogen bond and hydrophobic bonds with fewer amino acids. Hence, proline analogues bind stronger and present better values of binding energy to Eg5 compared with the cyclized cysteine ones. The pharmacokinetics of the molecules were also tested. Generally, all compounds have good cell permeability with
123–126 possessing good intestinal absorption. Lastly, for future studies, the potential of the structures to inhibit other targets was studied with
122 being a potential kinesin inhibitor.