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Article

11B NMR Together with Infrared Spectroscopy Provides Insight into Structural Elucidation of Quadrivalent Diazaborines & Cyclic Boronate Esters: Intriguing & Little-Explored

Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK
Molecules 2024, 29(21), 4998; https://doi.org/10.3390/molecules29214998
Submission received: 6 September 2024 / Revised: 11 October 2024 / Accepted: 15 October 2024 / Published: 22 October 2024

Abstract

:
Imidazo-fused diazaborines, which serve as intermediary structures somewhat alongside benzene and borazine, had been of particular interest to Dewar and Snyder more than 60 years ago. To this end, Dewar utilised his ‘ π -complex theory’so as to represent ‘borazaros’as a ‘quadrivalent’ species; however, sadly, modern representations have deviated and leapt into ‘trivalent’ counterparts. Bonding in boron species has never been straightforward, to such an extent that the orthodox ‘ethane’ like diborane, i.e., H3B–BH3, which conformed to the paradigmatic rules of molecular structure, in particular, hybridisation and electronegativity, was later evolved to a more realistic ‘3-centre 2-electron’ bonding so as to give the lie to the purported diborane structures of X-ray diffractors. Herein 11B NMR together with IR spectroscopy sheds light on the nature of bonding in borazaros, and ‘caged’ cyclic oxazaborons so as to reinforce, and reinvigorate the old literature, which could be of interest to both the synthetic, and medicinal chemist alike.

1. Introduction

Unlike 1H and 13C with a ‘nuclear spin’ I = ½, both naturally occurring isotopes of boron, i.e., 10B (I = 3) and 11B (I = 5/2), are NMR active; however, the latter is more versatile than the former for NMR investigations by virtue of the fact that 10B has a natural abundance of only 19.6%, whereas 11B exhibits a natural abundance of 80.4% [1]; as such, 10B comes with a much lower receptivity, i.e., receiver gain, and a quadrupole moment almost thrice as much as that for 11B, which broadens the 10B NMR signals. Moreover, the Larmor frequency of 10B is almost three times lower than that for 11B, resulting in a much lower signal resolution, and coupling constants, i.e., J (in Hz) in 10B NMR spectra [2]. Despite these drawbacks, 10B NMR can be particularly useful in niche mechanistic studies such as rearrangements [3]. NMR spectroscopy, much to contemporary efforts, has proved exceptionally advantageous in elucidating structures of boron compounds, and their behaviour in solutions [4,5]. The extrapolation of NMR activities of other common NMR active nuclei, such as 1H, 13C, 15N, 31P, etc., to 11B NMR suggests that the following factors should determine chemical shifts ( δ ) in 11B NMR spectra:
  • Electron density;
  • Coordination number;
  • Hybridisation;
  • Ring current.
However, the above is found not to be true for many 11B NMR spectra. For example, the signals from B1 and B2 in the 11B NMR spectrum of n-B9H15 are ≈64.7 ppm apart, such that B2 resonates at the highest field and B1 at the lowest field in the aforementioned 11B NMR spectrum [6], in spite of both B1 and B2 in n-B9H15 exhibiting identical connectivity, hybridisation, and even immediate bonding environment (Figure 1).
Similar, but different to the 11B NMR spectrum of n-B9H15 Fan et al. [7] have very recently discovered that the 11B{1H} NMR signals from the boron atoms in B3H7 coordinated 4-methylene dihydropyridine and ethyl 4-isopropyl 3-carboxylate dihydropyridine are reversed compared to that of their parent complexes: the top boron atom connected to the pyridinyl nitrogen is downfielded, and the two base boron atoms resonate at a much higher field in the aforementioned 11B{1H} NMR spectra, in marked contrast to the general trend observed for most B3H7 adducts [7].
On the other hand, in stark contrast to other NMR active nuclei, electron density does not appear to preponderate over other factors in determining the position of chemical shifts in 11B NMR spectra, as the boron atoms of higher electron density in B7 H 7 2 are less shielded than their counterparts of lower electron density in the same cluster [8]. Intriguingly, Ksenofontov et al. [9] have attempted to devise an accurate machine learning method for predicting the 11B NMR chemical shifts of BODIPYs; however, it has been borne out that the peripherally halogenated BODIPYs are incongruent to an extent that nearly 41% of the aforementioned compounds in their dataset were outliers, and that this should be so is a corollary of, inter alia, caveats of the model for not factoring in the effects of spin–orbit interactions. To this end, there are no hard and fast rules as yet to fully predict or explain some of the anomalies that have been observed for the 11B NMR spectra, and each and every single boron compound can give rise to distinctive and unexpected 11B NMR spectra, which have been observed for the novel boronate esters herein and form the basis of the discussions below.

2. Results and Discussion

Recent protein-directed dynamic combinatorial chemistry studies of L-cysteine derivatives with 2-formylphenylboronic acid (2-FPBA) on the surface, i.e., in crystallo of oxacillinases, e.g., OXA-10 (unpublished), brought home an intriguing quadrivalent cyclic boronate ester, i.e.12 (Figure 2), given that the same observed ‘tetracyclic caged’ structure for 12 has been reported in solution elsewhere [10], it is conceivable that based on the observed spectroscopic and X-ray crystallographic data, boronate esters 11 and 1318 (Figure 3) should also follow suit.
Inasmuch as both the diazaborines and boronate esters herein presumably almost certainly feature ‘quadrivalent’ boron species, a comparison of chemical shifts (vide infra) in 11B NMR spectra of the thus obtained diazaborines and boronate esters (Figure 3) not only provides structural insight into these intriguing scaffolds, but also paves the way for a better understanding of bonding in such boron species, and salient factors in their 11B NMR resonance frequencies.
Reference has already been made to the unpredictability and irregularity of trends in 11B NMR resonance frequencies (vide supra); however, typically, though it need not of necessity, the vacant 2pz orbital of boron plays a crucial role in the position of chemical shifts in 11B NMR spectra. Strictly speaking, trivalent boron species resonate at much lower fields than their quadrivalent counterparts. For instance, trimethyl borane as a true trivalent boron species resonates at the lowest field, whereas trimethyl borate as a somewhat quadrivalent boron species with considerable π-bonding character resonates at much higher fields in 11B NMR. Equally, quite recently Li et al. [11] have also observed that increasing the number of SP3 hybridised boron atoms in aqueous solutions of borax shifts the corresponding chemical shifts to a higher field in their observed 11B NMR spectra. The belief that the determinant factor in the position of chemical shifts in 11B NMR spectra is the π-donating ability of substituents on boron, implies that diethylamino substituents on boron should bring about upfield shifts for the 11B signals in their NMR spectra, relative to that from –OMe by virtue of the fact that –NEt2 is mesmerically more π-donating than –OMe. However, this effect appears to be reversed in aliphatic boron species, as such B(NEt2)3 resonates at a much lower field in 11B NMR than that observed for B(OMe)3 [12].
The chemical shift δ R C (in ppm) between a compound C and reference R is given by the following equation:
δ R C = 10 6 ( H C H R ) / H R 10 6 ( C R )
where HC and HR are the resonance frequencies of the applied magnetic field for compounds C and R, respectively, and C and R are the resulting shielding tensors. Ramsey [13,14], devised an expression for calculating the NMR shielding tensor ; as such, for most solution NMR applications, the shielding tensor can be replaced by a scalar quantity σ to give the following equation:
σ = e 2 2 m c 2 0 j ( x j 2 + y j 2 ) / r j 3 0
Neglecting the deferential overlaps of the above expression can lead to the following simplified expression for the chemical shift δ i of the nucleus of atom i [15]:
δ i = A q i + ( j i ) B q j / r i j 3
where qi is the π -electron density of atom i, rij is the internuclear distance between atom i and j, and A and B are constants. To this end, another salient factor other than the π -donating capabilities of the substituents attached to boron in 11B NMR would be the ‘electronic cloud’ of the substituents attached to boron, i.e., the availability of lone pairs above and below the plane of the π -bond [15]. As exemplified by the last equation above (Equation (3), atoms j with lone pairs orthogonal to the plane of the covalent bond would have a significant impact on the chemical shift by virtue of a large qj and small rij (Table 1).
Analysis of the 1H, 13C and 11B NMR data above (Table 1), on looking more closely, reveals that whilst the boron in 2-FPBA has a much greater trivalent character, less shielded and non-aromatic relative to that in quadrivalent diazaborines which should be more shielded, the boron atoms in the diazaborines togehter with that in 2-FPBA all resonate at about the same field in their 11B NMR; on the other hand, the proton of the formyl group in 2-FPBA, resonates at a much lower field than that from γ -CH of the benzofused-imadazo ring in 1H NMR by virtue of greater shielding that the γ -CH moieties of benzofused-imadazo rings experience, which is in marked contrast to that observed for 11B NMR. The same is also true for 13C NMR data, the γ -CH and γ -CMe of the imidazo rings are significantly upshifted compared to the non-ring carbon of the formyl group in 2-FPBA (Table 1). Intriguingly, the solvation effect of methanol- d 4 on benzodiazaborine 4 (vide infra) relative to that of acetonitrile- d 3 for its closely related benzodiazaborine 5 has clearly been echoed by both the upshifted and downshifted signals from boron and γ -CH of benzodiazaborine 4 in its 11B and 13C NMR spectra, respectively. The 11B chemical shifts from the boronate esters, in comparison with those from the diazaborines, exhibit a whopping three-fold upfield shift in their spectra, in spite of the fact that both species are quadrivalent, and potentially negatively charged.
Whilst the aromaticity of diazaborines can play a crucial role in the observed data, as illustrated above (Equation (3)), the electronic cloud of heteroatoms with available lone pairs adjacent to the boron centre in question can account for the aforementioned large upfield shift of almost 20 ppm in their 11B NMR spectra (Figure 4).
In view of the above, it is conceivable that the boronate esters are tetracyclic and ‘ring-closed’, as if they were ‘ring-open’ and tricyclic, the thus obtianed C3h boron species would be less shielded, and would absorb at about the expected field in 11B NMR, just like that of 2-FPBA with a similar chemical environment and shielding effects (Figure 5).
The effects of the electronic cloud of the adjacent substituents on boron (Figure 4) is further evident from the upshifted signal of the boron in benzodiazaborine 4 in its 11B NMR spectrum in methanol- d 4 , i.e., δ B 16.2 (Figure 6), relative to that obtained in acetonitrile- d 3 for benzodiazaborine 5, i.e., δ B 28.3 (Table 1).
Further support for the assertion that the aforementioned boronate esters (Figure 3) are ‘ring-closed’ and tetracyclic is provided by the upfield shift of their δ -CH and δ -CMe signals in 13C NMR, relative to that observed for the C=O of their precursors i.e., 2-FPBA and 2-acetylphenylboronic acid (2-APBA), which suggests that the D3h carbon of the formyl or acyl moieties, is now a T d centre, bonded to four substituents, and fully saturated. This arrangement brings the carboxyl moiety in the ‘ring-open’ structure in close proximity to the boronic acid so as to further cyclise, close the ring and form a ‘tetracyclic caged’ structure (Figure 7). This is in agreement with the observed IR frequencies i.e., ≈1730–1710 c m 1 expected for esters (Table 1), as the parent carboxyl moieties should resonate at lower frequencies i.e., ≈1600–1550 c m 1 .

3. Materials and Methods

3.1. General Materials and Instruments

All reagents and solvents in the experiments were of reagent grade quality. They were obtained from commercial sources and used without further purification unless otherwise stated. Diethyl ether, herein, is referred to as ether. Furthermore, 2-FBPA, 2-APBA (purum 95.0+%) and sodium phosphate monobasic (puriss. anhydrous, >99.0%) were from Sigma-Aldrich® Chemical Co. (Fluka, Germany). Semicarbazide hydrochloride (puriss. 99.0%) was from Alfa Aesar® (Guilford, England). The water used was from a Millipede Milli-Q EDM Water Purification A10 unit (Merck, Germany) or was HPLC-grade. High performance liquid chromatography–mass spectrometry (LC-MS) analyses were performed using an Agilent UPLC SQD (USA) instrument equipped with a Chromolith® (ACE, England), C18, 2.1 × 50 mm column. The eluent was 0.1% formic acid ( v / v ) in water (solvent A)/acetonitrile (solvent B) over a 5–95% acetonitrile gradient, with monitoring at 214 nm over 10 min. Preparative reversed phase high performance liquid chromatography (RP-HPLC) was performed using a Shimadzu SPD-20A (Kyoto, Japan) equipped with a Waters Sunfire (USA), C18, 250 × 21.2 mm column. The eluent was 0.1% TFA ( v / v ) in H2O (solvent A) and 0.1% TFA ( v / v ) in MeCN (solvent B) over various MeCN gradients and flow rates as indicated, with monitoring at 214 nm. Electrospray ionisation mass spectrometry was performed using an Agilent single quadrupole unit equipped with CTC-PAL. High-resolution electrospray mass spectra were obtained on a Waters LCT Premier XE spectrometer (USA). The melting points were determined using a Gallenkamp MFG 595 010 melting point apparatus (Synoptics Ltd., Cambridge, England) and a Reichert Austria hot stage microscope (Vienna, Austria). 1H, 13C and 11B NMR spectra were recorded on a Bruker AVIII HD 400 unit or a Bruker AVIIIHD 600 (Nasdaq, USA) equipped with prodigy N2 broadband CryoProbe unit, as well as a Bruker AVIII 700 unit (Nasdaq, USA) equipped with TCI H/C/N helium CryoProbe operating (Nasdaq, USA) at 700, 600, 400 MHz, 193, 151, 101 MHz, 225, 193 and 128 MHz, respectively, using CDCl3, D2O, methanol- d 4 and acetonitrile- d 3 as solvents. Chemical shifts ( δ ) are given in parts per million (ppm) relative to the internal tetramethylsilane (TMS). The coupling constants are given in Hz. The abbreviations s, d, t, td, dd, dq and m correspond to singlet, doublet, triplet, triplet of doublets, doublet of doublets, doublet of quartets, and multiplet, respectively. The IR spectra were recorded on a Bruker Tensor 27 Fourier transform infrared spectrometer (Nasdaq, USA); the abbreviations br, w, m, s and vs correspond to broad, weak, medium, sharp and very sharp, respectively (provisional assignments are given); [ α ] D values are given in 10 1 deg cm2 g−1 at the specified temperature. The reaction products were identified by their NMR, IR spectra and/or otherwise by LC-MS analyses.

3.2. General Procedure for Synthesis of Boronic Acid and Ester Heterocycles

The benzodiazaborines, diazaborines and boronate esters were generally synthesised according to the literature procedure [16] with the following modification: the boronic acid (50 mM) and the nucleophile (50 mM) in 0.10 M PBS buffer (pH ≈ 7.4) were nutated for 2.0 min at ambient temperature. If a solid residue was precipitated, the slurry was centrifuged for 20 min at 4.0 °C and washed with water twice, followed by lyophilisation to furnish the desired semi-pure product. In cases where the product did not precipitate, it was purified using preparative RP-HPLC–0.1% TFA (v/v) in H2O (solvent A)/ 0.1% TFA (v/v) MeCN (solvent B) over a 5–50% MeCN gradient and monitored at 124 nm over 40 min at 40 °C. Samples of the semi-pure products from the aforementioned sedimentation process were also purified using the above preparative RP-HPLC for analytical characterisation purposes.

3.3. 1-Hydroxybenzo-[d][1,2,3]-diazaborinine-2(1H)-carboxamide (1)

Benzodiazaborine 1 was synthesised from 2-FPBA and semicarbazide according to the general procedure [16]. The precipitated powder was collected and purified using RP-HPLC (retention time: 12.2–12.5 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 1 as a white fluffy powder (76 mg; 80%); mp 197–200 °C (dec.) (lit. [17] 295–299 °C dec.); ν m a x / c m 1 (ATR) 3418w (N–H asymmetric), 3140br (N–H symmetric), 2925w (C–H), 1673s (C=O), 1297m (C–N), 1219m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 8.17–8.12 (1 H, m, CH-Ar), 8.08 (1 H, s, γ -CH), 7.79 (2 H, m, 2 × CH-Ar), 7.70 (1 H, td, J 7.0 and 1.5, CH-Ar); δ C (151 MHz; acetonitrile- d 3 ) 129.0–135.8 (4 × CH-Ar and 2 × C-Ar), 142.7 ( γ -CH), 164.1 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 29.8; LC-MS (retention time: 5.6–5.9 min) m / z (ESI) 190 (M+ + H, 100%); HRMS (ESI) calcd. for C8H8BN3O2 [M + H]+ m / z = 190.0782, found: 190.0784.

3.4. 1-Hydroxy-4-methylbenzo[d][1,2,3]-diazaborinine-2(1H)-carboxamide (2)

Benzodiazaborine 2 was synthesised from 2-APBA and semicarbazide according to the general procedure [16]. The precipitated powder was collected and purified using RP-HPLC (retention time: 12.7–13.0 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 2 as a white fluffy powder (71 mg; 70%); mp 203 °C(dec.); ν m a x / c m 1 (ATR) 3389w (N–H asymmetric), 3205br (N–H symmetric), 1687s (C=O), 1311s (C–N), 1155m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 8.15–8.13 (1 H, d J 12.0, CH-Ar), 7.90–7.89 (1 H, d, J 6.0, CH-Ar), 7.80–7.77 (1 H, td, J 12.0 and 6.0, CH-Ar), 7.68–7.66 (1 H, td, J 12.0 and 6.0, CH-Ar), 2.56 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 20.2 (CH3), 126.7–135.8 (4 × CH-Ar and 2 × C-Ar), 146.9 ( γ -CH), 164.0 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 29.8; LC-MS (retention time: 6.0–6.4 min) m / z (ESI) 204 (M+ + H, 100%); HRMS (ESI) calcd. for C9H10BN3O2 [M + H]+ m / z = 204.0939, found: 204.0941.

3.5. Benzo[d][1,2,3]-diazaborinin-1(2H)-ol (3)

Benzodiazaborine 3 was synthesised from 2-FPBA and tert-butyl carbazate according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 9.7–10.1 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 3 as a white powder (38 mg; 31%); mp 232–239 °C (dec.); ν m a x / c m 1 (ATR) 3323m (N–H), 1558–1440s (C=C), 1380s (B–O), 1342s (B–N); δ H (600 MHz, acetonitrile- d 3 ) 8.10–8.08 (1 H, d, J 8.0, CH-Ar), 7.96 (1 H, s, γ -CH), 7.71–7.70 (2 H, m, 2 × CH-Ar), 7.62–7.58 (1 H, m, CH-Ar); δ C (151 MHz; acetonitrile- d 3 ) 127.8–136.4 (4 × CH-Ar and 2 × C-Ar), 140.4 ( γ -CH); δ B (193 MHz, acetonitrile- d 3 ) 27.7; LC-MS (retention time: 4.5 min) m / z (ESI) 147 (M+ + H, 100%); HRMS (ESI) calcd. for C7H7BN2O [M + H]+ m / z = 147.0724, found: 147.0721.

3.6. 8H-Benzo[4,5][1,2,3]diazaborinino[3,2-b]benzo[4,5][1,2,3]diazaborinino[2,3-e][1,3,5,2,6]oxadiazadiborinin-8-one (4)

Benzodiazaborine 4 was synthesised from 2-FPBA and carbazide according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 10.1–10.5 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 4 as a white powder (11 mg; 7.0%); mp 221–225 °C (dec.); ν m a x / c m 1 (ATR) 2928w (C–H), 1682s (C=O), 1209m (C–B); δ H (600 MHz, methanol- d 4 ) 8.35 (2 H, s, γ -CH), 8.23 (2 H, d, J 7.5, 2 × CH-Ar), 7.83–7.75 (4 H, m, 4 × CH-Ar), 7.70 (2 H, t, J 7.5, 2 × CH-Ar); δ C (151 MHz; methanol- d 4 ) 130.4–133.8 (8 × CH-Ar and 2 × C-Ar), 146.8 ( γ -CH), 175.5 (C=O); δ B (193 MHz, methanol- d 4 ) 16.2; LC-MS (retention time: 4.06 min) m / z (ESI) 301 (M+ + H, 100%); HRMS (ESI) calcd. for C15H12B2N4O3 [M + H]+ m / z = 301.1063, found: 301.1060.

3.7. 5,11-Dimethyl-8H-benzo[4,5][1,2,3]diazaborinino[3,2-b]benzo[4,5][1,2,3]diazaborinino[2,3-e][1,3,5,2,6]oxadiazadiborinin-8-one (5)

Benzodiazaborine 5 was synthesised from 2-APBA and carbazide according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 12.2–12.5 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 5 as a white fluffy powder (3.0 mg; 2.0%); mp 244–258 °C (dec.); ν m a x / c m 1 (ATR) 3399br (O–H), 2923w ( C s p 3 –H), 1683s (C=O), 1210s (C–B); δ H (600 MHz, acetonitrile- d 3 ) 8.56–8.54 (2 H, d, J 8.0, 2 × CH-Ar), 8.09–8.07 (2 H, d, J 8.0, 2 × CH-Ar), 7.97–7.94 (2 H, dd, J 12.0 and 8.0, 2 × CH-Ar), 7.88–7.84 (2 H, dd, J 12.0 and 8.0, 2 × CH-Ar), 2.77 (6 H, s, 2 × C H 3 ); δ B (193 MHz, acetonitrile- d 3 ) 28.3; LC-MS (retention time: 7.16 min) m / z (ESI) 329 (M+ + H, 100%) 346 (M+ + H3O, 20); HRMS (ESI) calcd. for C17H14B2N4O2 [M + H]+ m / z = 329.1376, found: 329.1373.

3.8. 1-Hydroxythieno[3,2-d][1,2,3]diazaborinine-2(1H)-carboxamide (6)

Diazaborine 6 was synthesised from 2-FTBA and semicarbazide according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 17.1–18.2 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 6 as a pale-yellow powder (60 mg; 61%); mp 273 °C (dec.); ν m a x / c m 1 (ATR) 3500–3200br (H-bonding O–H), 1698s (C=O), 1425vs (B–O), 1331s (B–N), 1287m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 8.20 (1 H, s, γ -CH), 7.80–7.79 (1 H, d, J 5.0, CH-Ar), 7.58–7.57 (1 H, d, J 5.0, CH-Ar); δ C (151 MHz; acetonitrile- d 3 ) 127.3–135.3 (2 × CH-Ar and 2 × C-Ar), 140.0 ( γ -CH), 164.0 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 28.6; LC-MS (retention time: 5.8 min) m / z (ESI) 196 (M+ + H, 100%), 373 (2 × M+ + H, 6.0); HRMS (ESI) calcd. for C6H6BN3O2S [M + H]+ m / z = 196.0347, found: 196.0346.

3.9. 1-Hydroxy-4-methylthieno[3,2-d][1,2,3]diazaborinine-2(1H)-carboxamide (7)

Diazaborine 7 was synthesised from 2-ATBA and semicarbazide according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 18.3–19.0 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 7 as a white fluffy powder (75 mg; 72%); mp 278 °C (dec.); ν m a x / c m 1 (ATR) 3448w (N–H asymmetric), 3261br (N–H symmetric), 1699s (C=O), 1421s (B–O), 1350s (B–N), 1286vs (C–B), 663vs (B–O); δ H (600 MHz, acetonitrile- d 3 ) 7.76–7.75 (1 H, d, J 6.0, CH-Ar), 7.57–7.56 (1 H, d, J 6.0, CH-Ar), 2.49 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 20.9 (CH3), 130.3–131.3 (2 × CH-Ar and 2 × C-Ar), 142.4 ( γ -C and C=O); δ B (193 MHz, acetonitrile- d 3 ) 28.4; LC-MS (retention time: 6.3 min) m / z (ESI) 210 (M+ + H, 100%); HRMS (ESI) calcd. for C7H8BN3O2S [M + H]+ m / z = 210.0503, found: 210.0502.

3.10. 1-Hydroxythieno[2,3-d][1,2,3]diazaborinine-2(1H)-carboxamide (8)

Moreover, 3-Formyl-2-thienylboronic acid (0.5 mmol) in acetonitrile (0.10 M) was added to a solution of semicarbazide hydrochloride in acetonitrile (0.1 M), and the resulting mixture was stirred at reflux (90 °C) overnight. Upon completion (LC-MS controlled), the solvent was removed in vacuo, and the residue was washed with plenty of water, filtered and dried in a desiccator to furnish the desired compound 8 as pale brown needle-like crystals (42 mg; 43%); mp 314 °C (dec.); ν m a x / c m 1 (ATR) 3445w (N–H asymmetric), 3190br (N–H symmetric), 1700m (C=O), 1449m (B–O), 1396m (B–N), 1309s (C–B), 672m (B–O); δ H (600 MHz, acetonitrile- d 3 ) 8.15 (1 H, s, γ -CH), 7.98 (1 H, d, J 5.0, CH-Ar), 7.52–7.52 (1 H, d, J 5.0, CH-Ar); δ C (151 MHz; acetonitrile- d 3 ) 126.7–136.4 (2 × CH-Ar and 2 × C-Ar), 145.0 ( γ -C), 163.8 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 28.8; LC-MS (retention time: 5.9 min) m / z (ESI) 196 (M+ + H, 100%), 373 (2 × M+ + H, 6.0); HRMS (ESI) calcd. for C6H6BN3O2S [M + H]+ m / z = 196.0347, found: 196.0347.

3.11. 1-Hydroxybenzo[d][1,2,3]-diazaborinine-2(1H)-carbothioamide (9)

Benzodiazaborine 9 was synthesised from 2-FPBA and thiosemicarbazide according to the general procedure [16]. The needle-like crystals were collected, washed with cold water and purified using RP-HPLC (retention time: 10.2–10.5 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 9 as a white fluffy powder (27 mg; 26%); mp 187 °C (dec.); ν m a x / / c m (ATR) 3398m (N–H asymmetric), 3263 (N–H symmetric), 3040w ( C s p 3 –H), 1586s (C=S), 1297m (C–N), 1255m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 8.15–8.12 (1 H, d, J 2.0, γ -CH), 7.79–7.72 (1 H, m, CH-Ar), 7.60–7.56 (1 H, m, CH-Ar), 7.40–7.36 (2 H, m, 2 × CH-Ar); δ C (151 MHz; acetonitrile- d 3 ) 128.6–136.6 (4 × CH-Ar and 2 × C-Ar), 142.4 and 145.9 ( γ -CH), 178.8 (C=S); δ B (193 MHz, acetonitrile- d 3 ) 29.9; LC-MS (retention time: 5.01 min) m / z (ESI) 206 (M+ + H, 100%), 224 (M+ + H3O, 35), 393 (2 × M+, 15); HRMS (ESI) calcd. for C8H8BN3OS [M + H]+ m / z = 206.0554, found: 206.0553.

3.12. 1-Hydroxy-4-methylbenzo[d][1,2,3]diazaborinine-2(1H)-carbothioamide (10)

Benzodiazaborine 10 was synthesised from 2-APBA and thiosemicarbazide according to the general procedure [16]. The precipitated powder was washed with cold water and purified using RP-HPLC (retention time: 16.3–16.6 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to furnish the desired compound 10 as a white powder (61 mg; 56%); mp 249 °C (dec.); ν m a x / c m 1 (ATR) 3389m (N–H asymmetric), 3251 (N–H symmetric), 1586m (C=S), 1408s ( C s p 2 = C s p 2 ), 1303m (C–N); δ H (600 MHz, acetonitrile- d 3 ) 8.17–8.15 (1 H, m, CH-Ar), 7.90–7.87 (1 H, m, CH-Ar), 7.80–7.76 (1 H, m, CH-Ar), 7.70–7.66 (1 H, m, CH-Ar), 2.57 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 20.2 (CH3) 126.8–134.9 (4 × CH-Ar and 2 × C-Ar), 147.6 ( γ -C), 186.7 (C=S); δ B (193 MHz, acetonitrile- d 3 ) 30.0; LC-MS (retention time: 7.37 min) m / z (ESI) 220 (M+ + H, 100%), 420 (2 × M+ + H, 10); HRMS (ESI) calcd. for C9H10BN3OS [M + H]+ m / z = 220.0710, found: 220.0710.

3.13. (2aS)-4a-Hydroxy-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (11)

Heterocycle 11 was synthesised from 2-FPBA and D-cysteine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 20.1–21.4 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mLmin−1, 40 °C) to yield the desired compound 11 as a white fluffy powder (83 mg; 71%); mp 310–313 °C (dec.); [ α ] D 25 -19.6 (c 0.025 in acetonitrile); ν m a x / c m 1 (ATR) 3060w ( C s p 3 –H), 1730s (C=O), 1320m (C–N), 1204m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.44–7.42 (1 H, m, CH-Ar), 7.31–7.28 (2 H, m, 2 × CH-Ar), 7.19–7.17 (1 H, m, CH-Ar), 6.16 (1 H, s, δ -CH), 4.75–4.72 (1 H, d, 3 J H α , H β 6.0, α -CH), 3.59–3.55 (1 H, ABq, 1 J H β , H β 12.0 and 3 J H α , H β 6.0, β -CH), 3.46–3.42 (1 H, ABq, 1 J H β , H β 12.0 and 3 J H α , H β 6.0, β -CH); δ C (151 MHz; acetonitrile- d 3 ) 37.9 ( β -CH2), 65.6 ( δ -CH), 73.4 ( α -CH), 123.1–143.2 (4 × CH-Ar and 2 × C-Ar), 174.1 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.4; LC-MS (retention time: 4.58 min) m / z (ESI) 236 (M+ + H, 100%), 453 (2 × M+ + H, 100); HRMS (ESI) calcd. for C10H10BNO3S [M + H]+ m / z = 236.0547, found: 236.0545.

3.14. (2aR)-4a-Hydroxy-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (12)

Heterocycle 12 was synthesised from 2-FPBA and L-cysteine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 20.1–21.4 min) (5.0–50% TFA (0.1% v / v ) in MeCN/ TFA (0.1% v / v ) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 12 as a white fluffy powder (78 mg; 67%); mp 310–313 °C (dec.); [ α ] D 25 +5.8 (c 0.025 in acetonitrile); ν m a x / c m 1 (ATR) 3060w ( C s p 3 –H), 1730s (C=O), 1320m (C–N), 1204m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.44–7.42 (1 H, m, CH-Ar), 7.31–7.28 (2 H, m, 2 × CH-Ar), 7.19–7.17 (1 H, m, CH-Ar), 6.16 (1 H, s, δ -CH), 4.75–4.72 (1 H, d, 3 J H α , H β 6.0, α -CH), 3.59–3.55 (1 H, ABq, 1 J H β , H β 12.0 and 3 J H α , H β 6.0, β -CH), 3.46–3.42 (1 H, ABq, 1 J H β , H β 12.0 and 3 J H α , H β 6.0, β -CH); δ C (151 MHz; acetonitrile- d 3 ) 37.9 ( β -CH2), 65.6 ( δ -CH), 73.4 ( α -CH), 123.1–143.2 (4 × CH-Ar and 2 × C-Ar), 174.1 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.4; LC-MS (retention time: 4.58 min) m / z (ESI) 236 (M+ + H, 100%), 453 (2 × M+ + H, 100); HRMS (ESI) calcd. for C10H10BNO3S [M + H]+ m / z = 236.0547, found: 236.0545.

3.15. (2aR)-4a-Hydroxy-2,2-dimethyl-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (13)

Heterocycle 13 was synthesised from 2-FPBA and L-penicillamine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 17.5–18.3 min) (5.0–50% TFA (0.1% v/v) in MeCN/ TFA (0.1% v/v) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 13 as a white fluffy powder (59 mg; 45%); mp 250–255 °C (dec.); [ α ] D 25 +21.3 (c 0.025 in acetonitrile); ν m a x / c m 1 (ATR) 2935w ( C s p 3 –H), 1713s (C=O), 1204s (C–N), 1167vs (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.42–7.14 (4 H, m, 4 × CH-Ar), 6.25 (1 H, s, δ -CH), 4.29 (1 H, s, α -CH), 1.61 (3 H, s, C H 3 ), 1.41 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 23.4 and 29.9 (2 × CH3), 58.7 ( β -CH3), 71.2 ( δ -CH), 72.1 ( α -CH), 128.7–143.7 (4 × CH-Ar and 2 × C-Ar), 171.5 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.3; LC-MS (retention time: 5.4 min) m / z (ESI) 264 (M+ + H, 100%), 509 (2 × M+ + H, 100); HRMS (ESI) calcd. for C12H14BNO3S [M + H]+ m / z = 264.0860, found: 264.0862.

3.16. (2aS)-4a-Hydroxy-2,2-dimethyl-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (14)

Heterocycle 14 was synthesised from 2-FPBA and D-penicillamine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 17.1–17.9 min) (5.0–50% TFA (0.1% v/v) in MeCN/ TFA (0.1% v/v) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 14 as a white fluffy powder (67 mg; 51%); mp 250–255 °C (dec.); [ α ] D 25 –16.4 (c 0.025 in acetonitrile); ν m a x / c m 1 (ATR) 2935w ( C s p 3 –H), 1713s (C=O), 1204s (C–N), 1167vs (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.42–7.14 (4 H, m, 4 × CH-Ar), 6.25 (1 H, s, δ -CH), 4.29 (1 H, s, α -CH), 1.61 (3 H, s, C H 3 ), 1.41 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 23.4 and 29.9 (2 × CH3), 58.7 ( β -CH3), 71.2 ( δ -CH), 72.1 ( α -CH), 128.7–143.7 (4 × CH-Ar and 2 × C-Ar), 171.5 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.3; LC-MS (retention time: 5.4 min) m / z (ESI) 264 (M+ + H, 100%), 509 (2 × M+ + H, 100); HRMS (ESI) calcd. for C12H14BNO3S [M + H]+ m / z = 264.0860, found: 264.0862.

3.17. (2aS)-4a-Hydroxy-8b-methyl-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (15)

Heterocycle 15 was synthesised from 2-APBA and D-cysteine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 19.3–20.5 min) (5.0–50% TFA (0.1% v/v) in MeCN/ TFA (0.1% v/v) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 15 as a white fluffy powder (77 mg; 62%); mp 200 °C (dec.); [ α ] D 25 –14.4 (c 0.025 in acetonitrile); ν m a x / c m 1 (ATR) 3416w (O–H H-bonding), 1715s (C=O), 1260m (C–N), 1227m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.42–7.40 (1 H, d, J 6.0, CH-Ar), 7.34–7.28 (2 H, m, 2 × CH-Ar), 7.24–7.22 (1 H, d, J 6.0, CH-Ar), 4.79–4.77 (1 H, ABX, 3 J H α , H β 1 8.0 and 3 J H α , H β 2 4.0, α -CH), 3.65–3.62 (1 H, ABq, 1 J H β 1 , H β 2 12.0 and 3 J H α , H β 1 8.0, β 1 -CH), 3.42–3.39 (1 H, ABq, 1 J H β 1 , H β 2 12.0 and 3 J H α , H β 2 4.0, β 2 -CH), 2.01 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 29.1 (CH3), 35.7 ( β -CH2) 66.8 ( δ -C), 85.6 ( α -CH), 122.0–147.9 (4 × CH-Ar and 2 × C-Ar), 174.0 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.1; LC-MS (retention time: 3.59 min) m / z (ESI) 250 (M+ + H, 100%), 521 (2 × M+ + Na, 20); HRMS (ESI) calcd. for C11H12BNO3S [M + H]+ m / z = 250.0704, found: 250.0701.

3.18. (2aR)-4a-Hydroxy-8b-methyl-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (16)

Heterocycle 16 was synthesised from 2-APBA and L-cysteine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 19.8–20.9 min) (5.0–50% TFA (0.1% v/v) in MeCN/ TFA (0.1% v/v) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 16 as a white fluffy powder (77 mg; 62%); mp 200 °C (dec.); [ α ] D 25 +2.3 (c 0.025 in acetonitrile); ν m a x / c m 1 (ATR) 3416w (O–H H-bonding), 1715s (C=O), 1260m (C–N), 1227m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.42–7.40 (1 H, d, J 6.0, CH-Ar), 7.34–7.28 (2 H, m, 2 × CH-Ar), 7.24–7.22 (1 H, d, J 6.0, CH-Ar), 4.79–4.77 (1 H, ABX, 3 J H α , H β 1 8.0 and 3 J H α , H β 2 4.0, α -CH), 3.65–3.62 (1 H, ABq, 1 J H β 1 , H β 2 12.0 and 3 J H α , H β 1 8.0, β 1 -CH), 3.42–3.39 (1 H, ABq, 1 J H β 1 , H β 2 12.0 and 3 J H α , H β 2 4.0, β 2 -CH), 2.01 (3 H, s, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 29.1 (CH3), 35.7 ( β -CH2) 66.8 ( δ -C), 85.6 ( α -CH), 122.0–147.9 (4 × CH-Ar and 2 × C-Ar), 174.0 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.1; LC-MS (retention time: 3.59 min) m / z (ESI) 250 (M+ + H, 100%), 521 (2 × M+ + Na, 20); HRMS (ESI) calcd. for C11H12BNO3S [M + H]+ m / z = 250.0704, found: 250.0701.

3.19. (2aS)-4a-Hydroxy-2,2,8b-trimethyl-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (17)

Heterocycle 17 was synthesised from 2-APBA and D-penicillamine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 22.7–24.1 min) (5.0–50% TFA (0.1% v/v) in MeCN/ TFA (0.1% v/v) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 17 as a white powder (54 mg; 39%); mp 201 °C (dec.); [ α ] D 25 –4.5 (c 0.015 in acetonitrile); ν m a x / c m 1 (ATR) 3040w ( C s p 3 –H), 1723s (C=O), 1281m (C–N), 1242m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.38–7.28 (4 H, m, 4 × CH-Ar), 4.47 (1 H, s, α -CH), 1.94 (3 H, s, C H 3 ), 1.55 and 0.83 (6 H, s, 2 × C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 26.5 (2 × CH3), 29.9 (CH3), 56.4 ( β -C), 76.2 ( δ -C), 83.5 ( α -CH), 123.0–151.6 (4 × CH-Ar and 2 × C-Ar), 171.4 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.5; LC-MS (retention time: 4.47 min) m / z (ESI) 278 (M+ + H, 100%), 537 (2 × M+, 40), 577 (2 × M+ + MeCN, 20); HRMS (ESI) calcd. for C13H16BNO3S [M + H]+ m / z = 278.1017, found: 278.1014.

3.20. (2aR)-4a-Hydroxy-2,2,8b-trimethyl-2,2a,4a,8b-tetrahydro-3H-4-oxa-1-thia-2a1-aza-4a λ 4 -borapentaleno[1,6-ab]inden-3-one (18)

Heterocycle 18 was synthesised from 2-APBA and L-penicillamine according to the general procedure [16]. The clear reaction mixture was lyophilised, and the residue was purified using RP-HPLC (retention time: 22.4–23.9 min) (5.0–50% TFA (0.1% v/v) in MeCN/ TFA (0.1% v/v) in H2O over 40 min; 3.0 mL min−1, 40 °C) to yield the desired compound 18 as a white powder (37 mg; 27%); mp 201 °C (dec.); [ α ] D 25 +8.3 (c 0.015 in acetonitrile); ν m a x / c m 1 (ATR) 3040w ( C s p 3 –H), 1723s (C=O), 1281m (C–N), 1242m (C–B); δ H (600 MHz, acetonitrile- d 3 ) 7.38–7.28 (4 H, m, 4 × CH-Ar), 4.47 (1 H, s, α -CH), 1.94 (3 H, s, C H 3 ), 1.55 and 0.83 (6 H, s, 2 × C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 26.5 (2 × CH3), 29.9 (CH3), 56.4 ( β -C), 76.2 ( δ -C), 83.5 ( α -CH), 123.0–151.6 (4 × CH-Ar and 2 × C-Ar), 171.4 (C=O); δ B (193 MHz, acetonitrile- d 3 ) 11.5; LC-MS (retention time: 4.47 min) m / z (ESI) 278 (M+ + H, 100%), 537 (2 × M+, 40), 577 (2 × M+ + MeCN, 20); HRMS (ESI) calcd. for C13H16BNO3S [M + H]+ m / z = 278.1017, found: 278.1014.

3.21. (E)-2-(Thiophen-3-ylmethylene)hydrazine-1-carboxamide (19)

Carboxamide 19 was synthesised from 3-FTBA and semicarbazide according to the general procedure [16]. The precipitated powder was washed with cold water and lyophilised to furnish the desired compound 19 as an off-white powder (53 mg; 54%); mp 220 °C (dec.) (lit. [18] 233–234 °C); ν m a x / c m 1 (ATR) 3453w (N–H asymmetric), 3106br (N–H symmetric), 1684s (C=O), 1598s ( C s p 2 C s p 2 ), 1170m (C–N); δ H (600 MHz, acetonitrile- d 3 ) 7.90 (1 H, s, γ -CH), 7.62–7.61 (1 H, m, CH-Ar), 7.50–7.49 (1 H, m, CH-Ar), 7.42–7.41 (1 H, m, CH-Ar); δ C (151 MHz; acetonitrile- d 3 ) 125.3–127.6 (3 × CH-Ar and 1 × C-Ar), 138.0 ( γ -CH), 138.7 (C=O); LC-MS (retention time: 5.1 min) m / z (ESI) 170 (M+ + H, 100%); HRMS (ESI) calcd. for C6H7N3OS [M + H]+ m / z = 170.0383, found: 170.0382.

3.22. Propane-1-sulfonohydrazide (20)

To a chilled solution of hydrazine monohydrate (4.9 mL, 0.10 mol) in anhydrous THF (20 mL) was added 1-propanesulfonyl chloride (1.1 mL, 10 mmol) in anhydrous THF (10 mL) at 5.0 °C dropwise. The thus obtained clear reaction mixture was stirred at 10–20 °C for 18 h. Upon completion (LC-MS controlled), the clear reaction mixture was extracted with EtOAc (5.0 × 50 mL), the combined organic extracts were washed with aqueous sodium hypochlorite 5.0% w/w (100 mL), dried over Na2SO4, filtered and the solvent was removed in vacuo. The crude product was purified by flash column chromatography to yield the desired compound 20 as a white solid (1.3 g; 94%); Rf 0.40 (10% MeOH in CH2Cl2); mp 45 °C (lit. [19] 40–41 °C); ν m a x / c m 1 (ATR) 3303m (N–H asymmetric), 3243m (N–H symmetric), 1619s (C=O); δ H (400 MHz, CDCl3) 3.12–3.04 (2 H, m, α -C H 2 ), 1.91–1.80 (2 H, m, β -C H 2 ), 1.07 (3 H, t, J 7.5, γ -C H 3 ); δ C (101 MHz, CDCl3) 13.1 ( γ -CH3), 17.1, ( β -CH2), 51.2 ( α -CH2); LC-MS (retention time: 1.94 min) m / z (ESI) 139 (M+ + H, 100%).

3.23. 6-Methylthieno[3,2-d][1,2,3]diazaborinin-1(2H)-ol (21)

A solution of bread thiophene (40 mg, 0.30 mmol) in dichloroethane (5.0 mL) was added to hydrazide 20 dropwise, to which was added BBr3 (0.10 mL, 1.0 mmol) in dichloroethane (0.30 mL) followed by AlCl3 (4.0 mg, 30 μ mol) dissolved in dichloroethane (2.0 mL) under argon. The thus obtained yellow reaction mixture was stirred at reflux under argon for 20 min. The reaction mixture was cooled in an ice bath and poured into ice water (3.0 mL); the organic phase was separated, washed with deionised water (2.0 × 0.50 mL) and extracted with 1.0 M aqueous sodium hydroxide (3.0 × 2.0 mL). The aqueous extracts were collected and conc. HCl added until acidic to Congo red. The acidified aqueous extracts were extracted with CH2Cl2 (2.0 × 5.0 mL), dried over Na2SO4, and the solvent was removed in vacuo to yield a yellow wax. The residue was purified by flash chromatography to furnish the desired compound 21 as a green wax (30 mg; 60%); Rf 0.40 (10% MeOH in CH2Cl2); δ H (600 MHz, acetonitrile- d 3 ) 9.95 (1 H, s, CH=N), 8.01 (1 H, s, C=CH=C), 2.57 (3 H, d,J 1.0, C H 3 ); δ C (151 MHz; acetonitrile- d 3 ) 29.6 (CH3), 127.2–135.2 (1 × CH-Ar and 3 × C-Ar), 186.5 (CH=N); δ B (193 MHz, acetonitrile- d 3 ) 26.3; LC-MS (retention time: 4.7 min) m/z (ESI) 167 (M+ + H, 100%).

3.24. (E)-N-((5-Methylthiophen-2-yl)methylene)propane-1-sulfonohydrazide (22)

To a solution of bread thiophene (0.78 mL, 7.2 mmol) and hydrazide 20 (1.0 g, 7.2 mmol) in EtOH (10 mL) was added glacial AcOH (6 drops), and the resulting brown reaction mixture was stirred at ambient temperature for 1.0 h. Upon completion (LC-MS controlled), the solvent was removed in vacuo, and the residue was purified by flash column chromatography to furnish the desired compound 22 as a yellow solid (1.6 g; 94%); Rf 0.35 (7% MeOH in CH2Cl2); mp 108 °C (lit. [20] 109–110 °C); ν m a x / c m 1 (ATR) 3186m (N–H), 1148vs (S=O), 945s (S–O); δ H (400 MHz, CDCl3) 7.95 (1 H, s, γ-CH), 7.75 (1 H, s, α-NH), 7.06 (1 H, d, J 3.5, CH-Ar), 6.75–6.66 (1 H, m, CH-Ar), 3.33–3.15 (2 H, m, α-C H 2 ), 2.49 (3 H, d, J 1.0, C H 3 ), 1.97–1.79 (2 H, m, β-C H 2 ), 1.07 (3 H, t, J 7.5, γ-C H 3 ); δ C (101 MHz, CDCl3) 13.0 (γ-CH3), 15.7 (β-CH2), 17.0 (CH3), 52.7 (α-CH2), 125.8 and 131.1 (CH-Ar), 135.4 (C-Ar), 143.7 (γ-CH), 144.5 (C-Ar); LC-MS (retention time: 7.13 min) m / z (ESI) 247 (M+ + H, 100%); HRMS (ESI) calcd. for C9H15N2O2S2 [M + H]+ m / z = 247.0570, found: 247.0571.

3.25. 6-Methyl-2-(propylsulfonyl)thieno[3,2-d][1,2,3]diazaborinin-1(2H)-ol (23)

To a solution of FeCl3 (60 mg, 0.37 mmol) in dry dichloroethane was added hydrazone 22 (0.90 g, 3.7 mmol) in dry dichloroethane (50 mL) and BBr3 (1.1 mL, 11 mmol) in dry dichloroethane (3.0 mL) simultaneously under argon with vigorous stirring at 70 °C for 15 min. The orange reaction mixture was cooled in an ice bath and poured into ice water (30 mL). The subsequent reaction mixture was washed with deionised water (30 mL), and the organic phase was extracted with 1.0 M aqueous sodium hydroxide (3.0 × 30 mL). The aqueous extracts were combined, and conc. HCl added until a cloudy mixture was obtained (pH ≈ 2–3). The thus obtained colloidal was extracted with CH2Cl2 (4.0 × 100 mL), dried over Na2SO4, and the solvent was removed in vacuo. The green crude wax was purified by flash column chromatography to furnish the desired compound 23 as a white powder (0.72 g; 72%); Rf 0.30 (5% MeOH in CH2Cl2); mp 92–94 °C (dec.) (lit. [21] 85–86 °C); ν m a x / c m 1 (ATR) 3200–2800br (O–H H-bonding), 1361m and 1136s (S=O), 900vs (S–O); δ H (400 MHz, acetonitrile- d 3 ) 8.19 (1 H, s, γ -CH), 7.26 (1 H, t, J 1.0, CH-Ar), 3.48–3.42 (2 H, m, α -C H 2 ), 2.59 (3 H, d, J 1.0, C H 3 ), 1.71 (2 H, dq, J 15.0 and 7.5, β -C H 2 ), 0.95 (3 H, t, J 7.5, γ -C H 3 ); δ C R (101 MHz, acetonitrile- d 3 ) 12.4 ( γ -CH3), 15.1 ( β -CH2), 17.3 (CH3), 53.8 ( α -CH2), 128.2 (CH-Ar), 136.8 ( γ -CH), 148.2 (C-Ar); δ B (193 MHz, acetonitrile- d 3 ) 27.2; LC-MS (retention time: 7.25 min) m / z (ESI) 273 (M+ + H, 100%); HRMS (ESI) calcd. for C9H14BN2O3S2 [M + H]+ m / z = 273.0533, found: 273.0534.

4. Conclusions

Gao and coworkers [10] have reported that on reacting 2-FPBA and 2-APBA with L-cysteine in 0.10 M phosphate-buffered saline (PBS) buffer at physiological pH, bicyclic or tricyclic heterocycles form, which led to the survey of an array of borazaros and oxazaborons described herein (Figure 3); however, in this work, such reactions exclusively furnished tetracyclic and heteroaromatic structures. Whilst almost all the diazaborines as well as boronate ester 12 described in this work have, one way or another, been reported in the literature, by all means, this work is the first of its kind to delineate a ‘tetracyclic caged’ structure for novel boronate esters 11 and 1318, and report full chemical characterisation, i.e., mp, optical rotation, IR, NMR (1H, 13C and 11B cf. Supplementary Materials), LC-MS and HRMS of the aforementioned benzodiazaborines, diazaborines and novel boronate esters for which, so far as this work is concerned, there are no known precedents, and the specific applications and the broad implications of these intriguing heterocycles may, hopefully, be of interest to the synthetic and medicinal chemist alike.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules29214998/s1, Figures S1–S19: 1H, 13C and 11B NMR spectra (where applicable) of the diazaborines & boronate esters.

Funding

This work was supported by the Biotechnology and Biological Sciences Research Council (Grant No. BB/P504373/1) and GlaxoSmithKline.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The original contributions presented in this study are included in the article alongside Supplementary Materials, which can be downloaded at: https://www.mdpi.com/article/10.3390/molecules29214998/s1; further enquiries can be directed to the corresponding author.

Acknowledgments

Special thanks are due to Professors Mark G. Moloney and Jeremy Robertson for helpful discussions. The author is particularly grateful to the Royal Society of Chemistry for their generous donations facilitated by Kim Sutton. In addition, it cannot be too firmly emphasised, however, that it is both a duty and pleasure to place on record the debt that the author owes to the reviewers, whose invaluable comments on the original submission greatly improved the quality of this article.

Conflicts of Interest

The author declares no conflicts of interest.

References

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Figure 1. Despite having identical coordination and chemical environments, the signals from B1 and B2 are the furthest apart from each other in 11B NMR spectrum of n-B9H15. Both B1 and B2 are connected to five other boron atoms and one proton in the capped Archimedean antiprism n-B9H15; nota bene: for simplicity, protons are omitted from the borane cluster.
Figure 1. Despite having identical coordination and chemical environments, the signals from B1 and B2 are the furthest apart from each other in 11B NMR spectrum of n-B9H15. Both B1 and B2 are connected to five other boron atoms and one proton in the capped Archimedean antiprism n-B9H15; nota bene: for simplicity, protons are omitted from the borane cluster.
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Figure 2. (a) in crystallo Dynamic combinatorial chemistry of L-cysteine methyl ester with 2-FPBA on the surface of OXA-10; (b) X-ray crystal structure of the boronate ester 12 on OXA-10 (courtesy of Dr Jürgen Brem).
Figure 2. (a) in crystallo Dynamic combinatorial chemistry of L-cysteine methyl ester with 2-FPBA on the surface of OXA-10; (b) X-ray crystal structure of the boronate ester 12 on OXA-10 (courtesy of Dr Jürgen Brem).
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Figure 3. Benzodiazaborines, diazaborines and boronate esters.
Figure 3. Benzodiazaborines, diazaborines and boronate esters.
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Figure 4. The accessible electronic cloud of the oxygens on boron can account for the upfield shift in 11B NMR of the ‘tetracyclic caged’ boronate esters.
Figure 4. The accessible electronic cloud of the oxygens on boron can account for the upfield shift in 11B NMR of the ‘tetracyclic caged’ boronate esters.
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Figure 5. Both 11B centres i.e., D3h in 2-FPBA, and C3h in the ‘ring-open’ boronate estersshould resonate with similar frequencies in 11B NMR by virtue of similar bonding and shielding effects; however, the boron signal is upshifted in 11B NMR spectra of ’ring-closed’ boronate esters (Table 1).
Figure 5. Both 11B centres i.e., D3h in 2-FPBA, and C3h in the ‘ring-open’ boronate estersshould resonate with similar frequencies in 11B NMR by virtue of similar bonding and shielding effects; however, the boron signal is upshifted in 11B NMR spectra of ’ring-closed’ boronate esters (Table 1).
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Figure 6. No matter what the hybridisation of boron, the solvation effect of methanol- d 4 is sufficient to significantly shield the boron centres in benzodiazaborine 4.
Figure 6. No matter what the hybridisation of boron, the solvation effect of methanol- d 4 is sufficient to significantly shield the boron centres in benzodiazaborine 4.
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Figure 7. The tricyclic boronic acid intermediate sets the stage for further cyclisation to furnish the isolated tertacyclic caged boronate esters cf. (Figure 3), the carbonyl IR frequencies i.e., ≈ 1730–1710 c m 1 of which are in agreement with that expected for esters.
Figure 7. The tricyclic boronic acid intermediate sets the stage for further cyclisation to furnish the isolated tertacyclic caged boronate esters cf. (Figure 3), the carbonyl IR frequencies i.e., ≈ 1730–1710 c m 1 of which are in agreement with that expected for esters.
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Table 1. 1H, 13C, 11B and IR Data for 2-FPBA, Diazaborines & Boronate Esters.
Table 1. 1H, 13C, 11B and IR Data for 2-FPBA, Diazaborines & Boronate Esters.
Entry11B (CHO or γ -CH or δ -CH) (CHO or γ -C or δ -C) IR: C=O
2-FPBA29.910.05197.0
129.88.08142.71673s
229.8 146.91687s
327.77.96140.4
416.2 8.35 175.5 1682s
528.3 1683s
628.68.20140.01698s
728.4 142.41699s
828.88.15145.01700s
929.98.13144.0
1030.0 147.6
11 11.46.1665.61730s
13 11.36.2571.21713s
15 11.1 66.81715s
17 11.5 76.21723s
; Boronate esters 11, 13, 15 and 17 are enantiomers of 12, 14, 16 and 18, respectively, with identical spectroscopic data. ; 193 MHz, acetonitrile- d 3 . ; 600 MHz, acetonitrile- d 3 . ; 151 MHz, acetonitrile- d 3 . ; benzodiazaborine 4 is much less soluble in acetonitrile- d 3 ; its NMR spectra were recorded in methanol- d 4 instead. ; ν m a x / c m 1 (ATR), s stands for sharp.
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Dey, A.L. 11B NMR Together with Infrared Spectroscopy Provides Insight into Structural Elucidation of Quadrivalent Diazaborines & Cyclic Boronate Esters: Intriguing & Little-Explored. Molecules 2024, 29, 4998. https://doi.org/10.3390/molecules29214998

AMA Style

Dey AL. 11B NMR Together with Infrared Spectroscopy Provides Insight into Structural Elucidation of Quadrivalent Diazaborines & Cyclic Boronate Esters: Intriguing & Little-Explored. Molecules. 2024; 29(21):4998. https://doi.org/10.3390/molecules29214998

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Dey, Ashley L. 2024. "11B NMR Together with Infrared Spectroscopy Provides Insight into Structural Elucidation of Quadrivalent Diazaborines & Cyclic Boronate Esters: Intriguing & Little-Explored" Molecules 29, no. 21: 4998. https://doi.org/10.3390/molecules29214998

APA Style

Dey, A. L. (2024). 11B NMR Together with Infrared Spectroscopy Provides Insight into Structural Elucidation of Quadrivalent Diazaborines & Cyclic Boronate Esters: Intriguing & Little-Explored. Molecules, 29(21), 4998. https://doi.org/10.3390/molecules29214998

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