1. Introduction
The so-called ‘iron maiden’ molecules [
1,
2,
3,
4,
5,
6,
7,
8,
9] form one of the most interesting subgroups of
in-cyclophanes [
10,
11]. They are characterized by the presence of a benzene ring with three bridges (usually aliphatic, but not necessarily) connected to each other in the keystone carbon atom that additionally forms a bond to a hydrogen atom (i.e., a C-H bond with methine H) or its substituent, e.g., a methyl group [
6]. Crucially, this hydrogen atom is pointed towards the center of the ring. Such an arrangement of bonds (
in) is often more stable than a structure in which the C-H bond is directed in the opposite direction to the ring (
out arrangement) [
5,
12]. What is quite peculiar is that the compounds are named for the similarity of the final stage of ring closure during synthesis to medieval human-shaped torture devices, the so-called “iron maidens” in which spikes were driven into the victims enclosed in them [
13]. Due to such a specific structure, iron maidens show interesting spectral properties, e.g., a fairly large blue-shift of the C-H stretching vibration frequency on the IR spectrum and a large
1H NMR resonance.
In the current work, the most important iron maiden compound is
in-[3
][7]metacyclophane (
1), which has three propenyl (i.e., -CH
2-CH
2-CH
2-) bridges, as the other compounds studied can be considered as its derivatives. For the first time, this compound was synthesized in 1987 by Pascal Jr. et al. [
2] by oxidation of the less spatially crowded sulfur derivative 2,8,17-trithia-
in-[4
][9]metacyclophane (
2) (having bridges -CH
2-S-CH
2-CH
2-) by a mixture of 30% aqueous hydrogen peroxide and acetic acid followed by thermal extrusion of sulfur dioxide. Unfortunately, the authors failed to obtain a crystal and perform X-ray crystallographic analysis. Nevertheless, spectroscopic analysis showed a very large field resonance for the methine hydrogen atom (
= −4.03 ppm) in the
1H NMR spectrum as well as a very large blue-shift of ca. 400 cm
−1 for the
frequency. This blue-shift was attributed to strong steric compression. Indeed, this is quite a telltale effect in steric constraint [
14,
15]. In addition to the spectroscopic measurements mentioned, Pascal et al. also performed molecular mechanics calculations (MM2(85)), which showed that the methine hydrogen is only 1.78 Å from the benzene ring [
2]. It should be mentioned that, despite the failure to determine the X-ray crystallographic structure of
in-[3
][7]metacyclophane (
1), Pascal et al., however, managed to perform crystallographic analysis for its derivatives, e.g., 2,6,15-trithia-
in-[3
][7]metacyclophane (
3) [
3] and 2,8,17-trithia-
in-[4
][9]metacyclophane (
2) [
4]. The structural formulas of
1–
3 are shown in
Figure 1.
Figure 1 clearly shows that iron maiden molecules in the
in conformation can be thought of as cage structures in which the methine hydrogen atom is tightly trapped between the keystone carbon atom, the ring plane and the aliphatic side chains. Very recently, we have studied the effect of replacing the methine hydrogen atom with a halogen atom X (X = F, Cl, Br) on the geometries and electronic structures of several iron maiden molecules with CCC, CCCC, CSC or CSCC side chains [
9]. Many interesting findings have emerged. In terms of geometric changes, it has been shown that the H→F→Cl→Br substitution leads to a significant expansion of the cage structure of the iron maiden molecule. This structural expansion has been shown to be associated with an increase in the energetic destabilization of X. On the contrary, the H→F→Cl→Br substitution leads to an increasingly pronounced shortening of the C-X bond. Importantly, shorter side chains lead to stronger effects, while insertion of sulfur atoms into the side chains reduces these effects relative to the carbon counterpart [
9].
Interestingly, based on the obtained MBO (Mayer Bond Order [
16,
17,
18,
19], which is a generalization of Wiberg Bond Index [
20]) values, it has been shown that the Br
interaction is bonding regardless of the molecule, the Cl
interaction is bonding in molecules with longer side chains (i.e., CCCC or CSCC) and anti-bonding when the side chains are short (i.e., CCC or CSC), while the interaction F
is to be anti-bonding regardless of the type of molecule. Nevertheless, regardless of whether the MBO values suggest a bonding or anti-bonding nature of the X
interaction, the QTAIM-based (Quantum Theory of Atoms in Molecules [
21,
22,
23,
24,
25]) calculations have always given three bond paths between the apical X atom and the carbon atoms of the benzene ring. Therefore, if the X
interaction were to be anti-bonding indeed, the presence of such bond paths should be considered counterintuitive [
26,
27,
28,
29,
30,
31] and contrary to the orthodox QTAIM [
24,
25]. On the other hand, the QTAIM-based IQA (Interaction Quantum Atoms [
32,
33]) energy decomposition scheme has shown that the X
interaction in each of the analyzed iron maiden molecules is stabilizing and, interestingly, almost purely covalent in nature, as indicated by the overwhelming dominance (>95%) of the exchange-correlation energy term [
9]. To this picture of the X-substituted iron maidens must be added a rather complex pattern of the repulsive and attractive interactions inside the cage structure as has been obtained using NCI (i.e., the Noncovalent Interactions index [
34,
35]). Namely, the X
interaction has turned out to be composed of areas corresponding to both of these contributions (i.e., the repulsive and attractive interactions) and not just one of them. Most importantly, however, it has turned out that the substitution H→F→Cl→Br leads to the expansion of a repulsive region between the apical X atom and the side chains, especially the C-C bonds. Following this finding, we have proposed [
9] that the steric hindrance in the
in conformers of iron maiden molecules is not so much due to the repulsion between the apical X atom and the benzene ring, but rather to unfavorable steric interactions between the X and the C-C side bonds.
At the time of our earlier article on iron maiden molecules [
9], we were unaware of two slightly earlier theoretical papers on the subject [
7,
8]. In the first of them, Vujović et al. [
7] have applied ETS-NOCV (i.e., the combination of the Extended Transition State (ETS) method [
36] with the Natural Orbitals for Chemical Valence (NOCV) method [
37,
38,
39]) and DF-SAPT (Density-Fitting Symmetry-Adapted Perturbation Theory [
40,
41]) interaction energy decomposition methods to describe
in/
out isomerism in
1 and
3 as well as their X-substituted derivatives. Most importantly, Vujović et al. [
7] have shown that the greater stability of
in forms of
1 and
3 results mainly from orbital stabilization with the participation of the aromatic ring electron density. However, the result may depend on the fragmentation scheme of the molecule within ETS-NOCV, in this case to the methine hydrogen or halogen and the rest of the molecule. In the case of SAPT-based calculations, the dimer model [
42] was used, in which the interaction in cyclophanes was modeled using the dimer 1,3,5-trimethylbenzene⋯methane. Interactions between fragments of such a dimer have turned out to be repulsive, thus suggesting the repulsive nature of the H/X
contact in the considered
in forms of the iron maiden molecules [
7]. However, it should be noted at this point that both ETS-NOCV and SAPT give results dependent on the interaction between whole fragments, while IQA may give a more local insight [
9]. In the second article, Østrøm et al. [
8], in addition to molecules
1 and
3, also examined a series of their derivatives in which the central atoms of the side chains were replaced by NH
, NH or O and the benzene (or 1,3,5-triazine) ring contained three substituents. It turned out that, among the considered systems, the shortest C-H
contact occurred in the derivative of
3 containing a 1,3,5-triazine ring and oxygen atoms built in place of sulfur atoms. Nevertheless, the
out conformer was more energetically favorable in this case.
To shed more light on the structural relationships and electronic structure of molecular iron maidens, derivatives of
in-[3
][7]metacyclophane (i.e.,
1) and its X-substituted (X = F, Cl, Br) counterparts in which, additionally, hydrogen atoms from the benzene ring have been replaced with amino, nitrile or methyl groups (
Figure 2) are studied in this work.
As the parent molecule,
1 has been chosen because, as mentioned earlier, having short CCC carbon chains, it has been characterized by the most pronounced effects [
9]. On the other hand, the amino group is one of the most electron-donating substituent, while on the contrary, the nitrile group is one of the most electron-withdrawing [
43,
44,
45]. In addition, the number of as many as three amino or nitrile groups provides the greatest electronic effect and thus the greatest impact on the distribution of electron density in the benzene ring. In this way, the entire range of electronic properties of substituents is covered because other substituents or a different number of them should only lead to intermediate effects. Nevertheless, derivatives with three methyl groups have also been considered to check the influence of the presence of substituents creating only (almost) pure inductive effect. It should be noted that the number of three substituents preserves the symmetry of the molecule (C
symmetry point group). Otherwise, this symmetry would be broken, which would significantly complicate the presentation of the obtained results. The main purpose of this paper is to present the effect of charge enrichment or depletion of the benzene ring on the structure of X-derivatives of molecule
1 and on the characteristics of the X
ultrashort contacts. The presented results also perfectly complement the findings of earlier theoretical works [
7,
8] on molecular iron maidens.
3. Methodology
All calculations were performed on the
B97X-D/6-311++G(d,p) level of theory that is utilizing the range-separated dispersion-corrected hybrid
B97X-D exchange-correlation functional by Chai and Head-Gordon [
76] and the 6-311++G(d,p) basis set [
77]. It was shown that
B97X-D is one of the best exchange-correlation functionals for general use [
78]. The 6-311++G(d,p) basis set is of the triple-zeta type and contains both polarization and diffuse functions on all atoms [
77,
79]. The presence of diffuse functions is necessary to reliably describe the lone electron pairs on halogen and nitrogen atoms. All the presented iron maiden molecules correspond to the true minima on the potential energy surface as indicated by the lack of imaginary frequencies. Both the geometry optimization and frequency calculations were performed with the Gaussian 16 package [
80].
In this article, the
in and
out forms of the reference molecule
in-[3
][7]metacyclophane (
1) (
Figure 1) and its X- and ring-substituted derivatives (X = F, Cl, Br; ring substituent = -NH
, -CN, -CH
) are considered (see
Figure 2). For simplicity, the compact notation
Xn will be used from now on, where
X =
H,
F,
Cl,
Br and
n =
0 for the unsubstituted benzene ring,
n =
1 for the ring with three groups -NH
,
n =
2 for the ring with three groups -CN, and
n =
3 for the ring with three groups -CH
. Thus, the parent molecule
1 is now on
H0 and, e.g., its derivative with an apical chlorine atom and three -NH
groups in the benzene ring is
Cl1. As already mentioned, the considered molecules have C
symmetry.
To consider the energetics of the
out→
in isomerization, the energy of this transition was determined,
=
(
Xn) −
(
Xn), where
(
Xn) and
(
Xn) are the total energies of the
in and
out forms, respectively. In addition, in order to study the effect of the H → X (X = F, Cl, Br) substitution, the energy of the X substituent (converted to kcal/mol) in the
Xn molecule,
(X), was determined using the following equations [
50]:
where the symbol without a subscript is the total energy of the molecule shown in parantheses. For example,
E(MeX) is the total energy of halogenomethane and
E(
Xn) is the total energy of either the
in or
out form of the
Xn molecule. Importantly,
is actually the energy of the following homodesmotic reaction, as can be seen by substituting the right-hand sides of Equations (
1) and (
2) into Equation (
3):
As a consequence, the substituent energy
(X) has a clear physical meaning. Namely, the value of
(X) tells how much X prefers to be (if
(X)
) or not (if
(X)
) in the
Xn molecule compared to MeX. Halogenomethane was chosen as a reference because it preserves the formal sp
hybridization on the keystone carbon atom, and it is also the simplest molecule. However, this does not matter much, since the intention was to obtain relative energies, not absolute ones.
One way to estimate the bond strength is to determine its order [
81]. This was completed by computing the very popular but quite outdated Wiberg Bond Index (WBI) [
20]:
and its more recent generalization in the form of the Mayer Bond Order (MBO) [
16,
17,
18,
19]:
where
P and
S are the density and atomic orbital overlap matrices, respectively. Unlike WBI, MBO can also take negative values.
Bader’s QTAIM is an important and frequently used theoretical tool to describe various types of inter- and intramolecular interactions [
21,
22,
23,
24,
25]. In particular, it is helpful to know the electron density (
), its Laplacian (
, where
are the eigenvalues of the Hessian matrix of the electron density), the total electronic energy density (
H) [
82] and the bond ellipticity (
where
) at the bond critical point (BCP) [
21] of interest. The value of
H is negative for interactions with significant sharing of electrons and therefore is a measure of the covalence of an interaction, while the positive value of
H is characteristic for non-covalent interactions such as, e.g., weak hydrogen bonds. The bond ellipticity is a measure of the anisotropy in the electron density distribution at a critical point [
21]. Originally, it was used to describe the
-electron nature of multiple bonds; nevertheless, it is also often used to describe charge delocalization [
83] and molecular strain and instability [
84]. As mentioned in the Introduction, the analyzed iron maiden molecules are characterized by the presence of three equivalent (due to C
symmetry) bond paths (BP) [
21] X⋯C
. Each of them traces the maximum electron density value relative to neighboring points and has a minimum in the BCP between the linked nuclei (attractors). These QTAIM parameters, i.e.,
,
,
H and
, were calculated in BCP
. However, another valuable QTAIM-based parameter is the A-B bond delocalization index,
(A,B). It describes the average number of electrons delocalized (shared) between atoms A and B and becomes a bond index when atoms A and B are connected to each other by a bond path [
21,
85,
86,
87,
88,
89]. Moreover,
(A,B) divided by the distance A⋯B is closely related to the exchange-correlation energy of the A-B bond [
72]. Although, as we have shown [
9], the X
interaction may well be characterized by a single value of
(X,C
ring), the total delocalization index [
73,
74] was also determined to take into account the fact that X actually interacts with the entire ring, i.e., with all six of its carbon atoms, not just one:
The IQA method [
32,
33] was used to gain an in-depth insight into the energetics of the X
interaction. It allows for a decomposition of the total energy of a system into mono- and polyatomic contributions. Of the many IQA parameters available, the interatomic interaction energy is most likely the most useful:
In this equation,
is the repulsion energy between nuclei of atoms E
and E
,
is the attraction energy between the nucleus of the atom E
and the electrons of the atom E
,
is the attraction energy between electrons of the atom E
and the nucleus of the atom E
and
is the interatomic two-electron repulsion energy. The sum of the middle two terms gives the energy of the interatomic nucleus–electron attraction (
). Then, the interelectron repulsion energy can be further divided into a sum of the purely classical (Coulombic) contribution and the exchange-correlation (i.e., the non-classical term) energy:
Moreover, the sum of the first three terms in Equation (
9) and
gives the electrostatic energy, leading to a compact expression for the interatomic interaction energy:
In this way, the interatomic interaction energy
is divided into its classical electrostatic contribution and a non-classical exchange-correlation contribution. An important ability of the IQA approach, not to be underestimated, is that
can be computed for any pair of E
and E
atoms and not necessarily linked to each other by a bond path. Moreover, IQA does not require any reference system or any further model-dependent assumptions (as is the case, for example, in ETS-NOCV [
36,
37,
38,
39], where results depend on the system defragmentation scheme). To take into account the fact that the apical X atom interacts with the entire benzene ring and that there are two types of ring carbon atoms (chain, no-chain), as in the case of the total delocalization index (Equations (
7) and (
8)), the interaction energy and its components for the X
interaction were determined by summing up all the energy components computed for the individual X⋯C
contacts:
In order to obtain a non-local insight into the characteristics of the interaction between the apical X atom and the remaining atoms, especially of the benzene ring, the NCI method was used [
34,
35]. This method is based on the reduced electron density gradient (
) and
, i.e., the electron density multiplied by the sign of the second eigenvalue of the electron density Hessian matrix (
). As a consequence, NCI allows for displaying individual weak interactions as certain regions of real space rather than as local features of a BCP corresponding to a pairwise interatomic contact. Most importantly, these interactions can be easily and visually (by using different colors) separated into attractive (if
) and repulsive (if
) [
34,
35]. The QTAIM-, IQA- and NCI-based calculations were performed using the AIMAll program [
90].
4. Conclusions
The so-called molecular iron maidens are interesting examples of cyclophanes distinguished by the unique ultrashort contact between an apical hydrogen atom or its small substitute and the benzene ring. It is widely believed that this forced ultrashort contact X is associated with a large spatial hindrance giving iron maidens specific properties. It seems, therefore, that these properties should strongly depend on the electronic features of the benzene ring. The main aim of the article was to investigate the influence of a strong charge enrichment or depletion of this ring on the properties of iron maiden molecules, especially on the characteristics of the ultrashort C-X contact. For this purpose, either three -NH groups characterized by extremely strong electron-donating properties or three -CN groups characterized by extremely strong electron-accepting properties were substituted into the benzene ring of in-[3][7]metacyclophane and its halogen derivatives (X = F, Cl, Br). In addition, their counterparts with three -CH groups, characterized almost only by the inductive effect, were also tested. Surprisingly, it has been shown that, despite such extremely strong electronic properties of both the -NH or -CN substituents, the tested iron maiden molecules show quite high resistance to their presence in the benzene ring.
In the case of halogenated derivatives, i.e., when X = halogen, the presence of three -NH, -CN or -CH groups slightly reduces the unfavorable endothermic effect of the out→in isomerization process. The energy of this process strongly depends on the X substituent. In the case of systems with either -NH or -CN, the negative values of Mayer Bond Order suggest the anti-bonding nature of the X interactions in the substituted iron maidens regardless of the type of X. However, in the case of unsubstituted and methyl-trisubstituted derivatives with Br, positive values suggest bonding nature of the Br interaction in these systems, which can be explained by the presence of an extremely pronounced -hole on the bromine atom. On the contrary, the IQA-based analysis has shown that the X interactions are stabilizing, and this stabilization increases after the insertion of either -NH or -CN groups. Although these interactions are almost purely covalent in nature according to IQA, the presence of three -NH groups on the benzene ring of the F-derivative significantly reduces the percentage contribution of the exchange-correlation energy due to the significant electrostatic interaction between the charge-depleted ring carbon atom and the F atom. The NCI-based analysis has shown that the substitution of three -NH, -CN or -CH groups into the benzene ring does not significantly affect the areas of weak interactions or weak attractions within the cage structure of iron maiden molecules. The new regions, on the other hand, are observed on the periphery of molecules and are associated with interactions between substituents and side chain atoms.