Substrate Specificity of Chimeric Enzymes Formed by Interchange of the Catalytic and Specificity Domains of the 5′-Nucleotidase UshA and the 3′-Nucleotidase CpdB
Abstract
:1. Introduction
2. Results
2.1. Construction of the Chimeras and Confirmation of Their Molecular Identities
2.2. Substrate Specificity of the Chimeras
3. Discussion
3.1. Limitations of the Study
3.2. Significance of the Study and Conclusions
4. Materials and Methods
4.1. Construction of the Chimeras
4.2. Homology Modeling of Chimeric Proteins
4.3. Expression and Purification of Chimeric Proteins
4.4. Tryptic Peptide Mass Fingerprinting
4.5. Activity Assays and Determination of Kinetic Parameters
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Sample Availability
Abbreviations
Bis-4-NPP | Bis-4-nitrophenylphosphate |
CpdB_Cdom | C-terminal domain of CpdB |
CpdB_Ndom | N-terminal domain of CpdB |
GST | Glutathione S-transferase |
SDS-PAGE | Sodium dodecyl sulfate polyacrylamide gel electrophoresis |
UshA_Cdom | C-terminal domain of UshA |
UshA_Ndom | N-terminal domain of UshA |
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Protein | Substrate | Rate at Fixed Substrate Concentration (750 µM) 1 | kcat | KM | kcat/KM |
---|---|---|---|---|---|
nmol min−1 mg−1 | s−1 | µM | M−1 s−1 | ||
UshA_Ndom–CpdB_Cdom | 5′-AMP | <3 | na | na | na |
CDP-choline | 83 ± 8 | 0.3 ± 0.01 | 1400 ± 400 | 210 ± 60 | |
UDP-glucose | 12 ± 4 | 0.1 ± 0.01 | 5000 ± 1700 | 20 ± 10 | |
3′-AMP | <3 | na | na | na | |
2′,3′-cAMP | 1900 ± 1060 | 3.6 ± 1.0 | 1100 ± 350 | 3400 ± 1300 | |
Bis-4-NPP | 20,500 ± 2700 | 45 ± 3 | 670 ± 120 | 68,000 ± 13,000 | |
CpdB_Ndom–UshA_Cdom | 5′-AMP | <3 | na | na | na |
CDP-choline | 1800 ± 210 | 11 ± 3 | 3900 ± 600 | 2700 ± 300 | |
UDP-glucose | 27 ± 6 | 0.2 ± 0.1 | 5900 ± 1900 | 40 ± 8 | |
3′-AMP | <3 | na | na | na | |
2′,3′-cAMP | 75,000 ± 15,000 | 117 ± 24 | 370 ± 40 | 320,000 ± 80,000 | |
Bis-4-NPP | 71,000 ± 18,000 | 208 ± 77 | 1400 ± 60 | 150,000 ± 55,000 | |
Native UshA [32] (or as referenced in parenthesis) | 5′-AMP | 360,000 (135,000 [33]) | ns (372 [33]) | ns (1.8 [33]) | ns (2 × 108 [33]) |
CDP-choline | ns (51,000 [33]) | ns (231 [33]) | ns (2.4 [33]) | ns (108 [33]) | |
UDP-glucose | 131,000 (16,000 [33]) | 504 (71 [33]) | 45 (10 [33]) | 107 (107 [33]) | |
3′-AMP | 0 (0 [34]) | na | na | na | |
2′,3′-cAMP | ns (800 [33]; 0 [34]) | ns | ns | ns | |
Bis-4-NPP | 537,000 (800 [33]) | ns | ns | ns | |
Native CpdB [35] | 5′-AMP | 4 | na | na | na |
CDP-choline | 370 | 0.5 | 219 | 2300 | |
UDP-glucose | 17 | 0.02 | 392 | 28 | |
3′-AMP | 147,000 | 176 | 14 | 1.3 × 107 | |
2′,3′-cAMP | 123,000 | 190 | 27 | 7.3 × 106 | |
Bis-4-NPP | 127,000 | 340 | 96 | 3.6 × 106 |
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Cabezas, A.; López-Villamizar, I.; Costas, M.J.; Cameselle, J.C.; Ribeiro, J.M. Substrate Specificity of Chimeric Enzymes Formed by Interchange of the Catalytic and Specificity Domains of the 5′-Nucleotidase UshA and the 3′-Nucleotidase CpdB. Molecules 2021, 26, 2307. https://doi.org/10.3390/molecules26082307
Cabezas A, López-Villamizar I, Costas MJ, Cameselle JC, Ribeiro JM. Substrate Specificity of Chimeric Enzymes Formed by Interchange of the Catalytic and Specificity Domains of the 5′-Nucleotidase UshA and the 3′-Nucleotidase CpdB. Molecules. 2021; 26(8):2307. https://doi.org/10.3390/molecules26082307
Chicago/Turabian StyleCabezas, Alicia, Iralis López-Villamizar, María Jesús Costas, José Carlos Cameselle, and João Meireles Ribeiro. 2021. "Substrate Specificity of Chimeric Enzymes Formed by Interchange of the Catalytic and Specificity Domains of the 5′-Nucleotidase UshA and the 3′-Nucleotidase CpdB" Molecules 26, no. 8: 2307. https://doi.org/10.3390/molecules26082307