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10 pages, 1826 KB  
Article
An Initial Genetic Assessment of the Emblematic Pumas of the Torres del Paine UNESCO Biosphere Reserve
by L. Mark Elbroch, Byron V. Weckworth, Kristine Pilgrim, Omar Ohrens, Nicolás Lagos, Stephanny Arroyo-Arce, Mauricio Montt, Dania Goic and Michael K. Schwartz
Diversity 2024, 16(9), 581; https://doi.org/10.3390/d16090581 - 13 Sep 2024
Viewed by 2827
Abstract
Physical and genetic isolation are recognized as significant threats to wildlife, especially in large carnivores inhabiting fragmented landscapes. We conducted an initial genetic assessment of pumas (Puma concolor) using 19 microsatellite loci for the emblematic puma population in the Torres del [...] Read more.
Physical and genetic isolation are recognized as significant threats to wildlife, especially in large carnivores inhabiting fragmented landscapes. We conducted an initial genetic assessment of pumas (Puma concolor) using 19 microsatellite loci for the emblematic puma population in the Torres del Paine UNESCO Biosphere Reserve in southernmost Chile, which exhibits some distinctive phenology that some local people speculate may be due to isolation and inbreeding depression. We extracted DNA from 385 scats collected in the field, of which 96 were identified as puma, representing 20 unique individuals. Torres del Paine pumas exhibited an Ho (0.51) only slightly lower than He (0.53), with 2 of the 19 loci significantly out of Hardy–Weinberg Equilibrium. Tests for a recent bottleneck of the population were not significant. The small sample size of individuals notwithstanding, these results seemingly do not support high levels of inbreeding. We also identified individual pumas in the field and assessed them for observable cowlicks (twirls of fur on their backs), a trait some have associated with genetic inbreeding depression in other puma populations. A total of 7 of 39 pumas exhibited cowlicks, consistent with geographic patterns of cowlicks within the species. Our tests exploring population structure among local pumas provided the most support for a single-population cluster, but we explored secondary structures as well, given its conservation implications. We encourage additional sampling in the region to further explore population structure and connectivity and determine the conservation status of the region’s pumas to guide the development of best strategies to ensure their persistence. Full article
(This article belongs to the Section Animal Diversity)
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22 pages, 5270 KB  
Article
Daytime Dysfunction: Symptoms Associated with Nervous System Disorders Mediated by SIRT1
by Tianke Huang, Xianxie Zhang, Ling Qi, Fang Li, Zuoxu Liu, Zhixing Wang, Yi Ru, Maoxing Li, Chengrong Xiao, Yuguang Wang, Zengchun Ma and Yue Gao
Biomedicines 2024, 12(9), 2070; https://doi.org/10.3390/biomedicines12092070 - 11 Sep 2024
Cited by 4 | Viewed by 3645
Abstract
Daytime dysfunction, including symptoms like sleepiness, poor memory, and reduced responsiveness, is not well researched. It is crucial to develop animal models and study the biological mechanisms involved. We simulated sleep disorders through sleep deprivation, and stressful stimuli were used to establish daytime [...] Read more.
Daytime dysfunction, including symptoms like sleepiness, poor memory, and reduced responsiveness, is not well researched. It is crucial to develop animal models and study the biological mechanisms involved. We simulated sleep disorders through sleep deprivation, and stressful stimuli were used to establish daytime functional animal models. We used tests like the sodium pentobarbital sleep synergy test and the DSI telemetry system to measure sleep duration and structure. We also used tests like the Morris water maze, open field test, grip test, and baton twirling test to assess mental and physical fatigue. To assess the intrinsic biological mechanisms, we measured sleep–wake-related neurotransmitters and related receptor proteins, circadian rhythm-related proteins and cognition-related proteins in hypothalamus tissue, and oxidative stress, inflammatory factors, S100β, and HPA axis-related indexes in serum. Multi-factor sleep deprivation resulted in the disruption of sleep–wakefulness structure, memory–cognitive function degradation, decreased grip coordination, and other manifestations of decreased energetic and physical strength. The intrinsic biological mechanisms were related to the disturbed expression of sleep–wake, circadian rhythm, memory–cognition-related proteins, as well as the significant elevation of inflammatory factors, oxidative stress, the HPA axis, and other related indicators. Intrinsically related biological mechanisms and reduced sirt1 expression can lead to disruption of circadian rhythms; resulting in disruption of their sleep–wake-related neurotransmitter content and receptor expression. Meanwhile, the reduced expression of sirt1 also resulted in reduced expression of synapse-associated proteins. This study prepared an animal model of daytime dysfunction by means of multi-factor sleep deprivation. With sirt1 as a core target, the relevant biological mechanisms of neurological disorders were modulated. Full article
(This article belongs to the Special Issue Molecular Mechanisms and Novel Therapies for Brain Injury)
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21 pages, 7152 KB  
Article
Error Mitigation in the NISQ Era: Applying Measurement Error Mitigation Techniques to Enhance Quantum Circuit Performance
by Misha Urooj Khan, Muhammad Ahmad Kamran, Wajiha Rahim Khan, Malik Muhammad Ibrahim, Muhammad Umair Ali and Seung Won Lee
Mathematics 2024, 12(14), 2235; https://doi.org/10.3390/math12142235 - 17 Jul 2024
Cited by 6 | Viewed by 6813
Abstract
In quantum computing, noisy intermediate-scale quantum (NISQ) devices offer unprecedented computational capabilities but are vulnerable to errors, notably measurement inaccuracies that impact computation accuracy. This study explores the efficacy of error mitigation techniques in improving quantum circuit performance on NISQ devices. Techniques such [...] Read more.
In quantum computing, noisy intermediate-scale quantum (NISQ) devices offer unprecedented computational capabilities but are vulnerable to errors, notably measurement inaccuracies that impact computation accuracy. This study explores the efficacy of error mitigation techniques in improving quantum circuit performance on NISQ devices. Techniques such as dynamic decoupling (DD), twirled readout error extraction (T-REx) and zero-noise extrapolation (ZNE) are examined through extensive experimentation on an ideal simulator, IBM Kyoto, and IBM Osaka quantum computers. Results reveal significant performance discrepancies across scenarios, with error mitigation techniques notably enhancing both estimator result and variance values, aligning more closely with ideal simulator outcomes. The comparison results with ideal simulator (having expected result value 0.8284) shows that T-Rex has improved results on IBM Kyoto and enhanced average expected result value from 0.09 to 0.35. Similarly, DD has improved average expected result values from 0.2492 to 0.3788 on IBM Osaka. These findings underscore the critical role of error mitigation in bolstering quantum computation reliability. The results suggest that selection of mitigation technique depends upon quantum circuit and its depth, type of hardware and operations to be performed. Full article
(This article belongs to the Special Issue Quantum Computing and Networking)
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15 pages, 8476 KB  
Article
Simulation of an Elastic Rod Whirling Instabilities by Using the Lattice Boltzmann Method Combined with an Immersed Boundary Method
by Suresh Alapati, Wooseong Che, Sunkara Srinivasa Rao and Giang T. T. Phan
Axioms 2023, 12(11), 1011; https://doi.org/10.3390/axioms12111011 - 26 Oct 2023
Viewed by 2276
Abstract
Mathematical modeling and analysis of biologically inspired systems has been a fascinating research topic in recent years. In this work, we present the results obtained from the simulation of an elastic rod (that mimics a flagellum axoneme) rotational motion in a viscous fluid [...] Read more.
Mathematical modeling and analysis of biologically inspired systems has been a fascinating research topic in recent years. In this work, we present the results obtained from the simulation of an elastic rod (that mimics a flagellum axoneme) rotational motion in a viscous fluid by using the lattice Boltzmann method (LBM) combined with an immersed boundary method (IBM). A finite element model consists of a set of beam and truss elements used to discretize the flagellum axoneme while the fluid flow is solved by the well-known LBM. The hydrodynamic coupling to maintain the no-slip boundary condition between the fluid and the elastic rod is conducted with the IBM. The rod is actuated with a torque applied at its base cross-section that acts as a driving motor of the axoneme. We simulated the rotational dynamics of the rod for three different rotational frequencies (low, medium, and high) of the motor. To compare with previous publication results, we chose the sperm number Sp=L(4πμω)/(EI)1/4 as the validation parameter. We found that at the low rotational frequency, f = 1.5 Hz, the rod performs stable twirling motion after attaining an equilibrium state (the rod undergoes rigid rotation about its axis). At the medium frequency, f = 2.65 Hz, the rod undergoes whirling motion, where the tip of the rod rotates about the central rotational axis of the driving motor. When the frequency increases further, i.e., when it reaches the critical value, fc  2.7 Hz, the whirling motion becomes over-whirling, where the tip of the filament falls back to the base and performs a steady crank-shafting motion. All three rotational dynamics, twirling, whirling, and over-whirling, and the critical value of rotational frequency are in good agreement with the previously published results. We also observed that our present simulation technique is computationally more efficient than previous works. Full article
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10 pages, 1882 KB  
Article
Comparison of the Ultrasound Visibility of Tissue Markers in Metastatic Lymph Nodes after Neoadjuvant Chemotherapy in Patients with Breast Cancer
by Ka Eun Kim, Eun Young Ko, Boo-Kyung Han, Eun Sook Ko, Ji Soo Choi, Haejung Kim, Jeong Eon Lee and Hyunwoo Lee
Diagnostics 2022, 12(10), 2424; https://doi.org/10.3390/diagnostics12102424 - 7 Oct 2022
Cited by 1 | Viewed by 4168
Abstract
This study aimed to investigate the differences in ultrasound (US) visibility for the localization of clipped metastatic lymph nodes after neoadjuvant chemotherapy (NAC), according to tissue marker type. This single-center retrospective study included 59 consecutive patients with breast cancer who underwent tissue marker [...] Read more.
This study aimed to investigate the differences in ultrasound (US) visibility for the localization of clipped metastatic lymph nodes after neoadjuvant chemotherapy (NAC), according to tissue marker type. This single-center retrospective study included 59 consecutive patients with breast cancer who underwent tissue marker insertion for histologically proven metastatic axillary lymph nodes before NAC, between March 2020 and August 2021. Two breast tissue markers were used: UltraClip™ (n = 29) and UltraCor™ Twirl™ (n = 30). The US visibility of tissue markers after NAC and the successful excision rate of the clipped lymph nodes were compared between the two types of tissue markers. UltraCor™ Twirl™ showed better overall US visibility than UltraClip™ after NAC (86.7% vs. 72.4%), but the difference was statistically insignificant. In the absence of residual metastatic lymph nodes on US after NAC (n = 32), UltraCor™ Twirl™ showed significantly better US visibility (83.3%, 15/18) than UltraClip™ (42.9%, 6/14; p = 0.027). The marker type was not associated with the successful excision of the clipped lymph node. UltraCor™ Twirl™ showed better US visibility than UltraClip™ in the metastatic axillary lymph nodes after NAC in the absence of residual suspicious lymph nodes on US. Full article
(This article belongs to the Special Issue Breast Cancer Imaging: Successes and Challenges)
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20 pages, 608 KB  
Article
Isospectral Twirling and Quantum Chaos
by Lorenzo Leone, Salvatore F. E. Oliviero and Alioscia Hamma
Entropy 2021, 23(8), 1073; https://doi.org/10.3390/e23081073 - 19 Aug 2021
Cited by 30 | Viewed by 4450
Abstract
We show that the most important measures of quantum chaos, such as frame potentials, scrambling, Loschmidt echo and out-of-time-order correlators (OTOCs), can be described by the unified framework of the isospectral twirling, namely the Haar average of a k-fold unitary channel. We [...] Read more.
We show that the most important measures of quantum chaos, such as frame potentials, scrambling, Loschmidt echo and out-of-time-order correlators (OTOCs), can be described by the unified framework of the isospectral twirling, namely the Haar average of a k-fold unitary channel. We show that such measures can then always be cast in the form of an expectation value of the isospectral twirling. In literature, quantum chaos is investigated sometimes through the spectrum and some other times through the eigenvectors of the Hamiltonian generating the dynamics. We show that thanks to this technique, we can interpolate smoothly between integrable Hamiltonians and quantum chaotic Hamiltonians. The isospectral twirling of Hamiltonians with eigenvector stabilizer states does not possess chaotic features, unlike those Hamiltonians whose eigenvectors are taken from the Haar measure. As an example, OTOCs obtained with Clifford resources decay to higher values compared with universal resources. By doping Hamiltonians with non-Clifford resources, we show a crossover in the OTOC behavior between a class of integrable models and quantum chaos. Moreover, exploiting random matrix theory, we show that these measures of quantum chaos clearly distinguish the finite time behavior of probes to quantum chaos corresponding to chaotic spectra given by the Gaussian Unitary Ensemble (GUE) from the integrable spectra given by Poisson distribution and the Gaussian Diagonal Ensemble (GDE). Full article
(This article belongs to the Special Issue Scrambling of Quantum Information in Chaotic Quantum Systems)
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23 pages, 641 KB  
Article
Recommendations for Abnormal Behaviour Ethograms in Monkey Research
by Andrea Polanco, Brenda McCowan, Lee Niel, David L. Pearl and Georgia Mason
Animals 2021, 11(5), 1461; https://doi.org/10.3390/ani11051461 - 19 May 2021
Cited by 9 | Viewed by 7652
Abstract
Laboratory monkey ethograms currently include subcategories of abnormal behaviours that are based on superficial morphological similarity. Yet, such ethograms may be misclassifying behaviour, with potential welfare implications as different abnormal behaviours are likely to have distinct risk factors and treatments. We therefore investigated [...] Read more.
Laboratory monkey ethograms currently include subcategories of abnormal behaviours that are based on superficial morphological similarity. Yet, such ethograms may be misclassifying behaviour, with potential welfare implications as different abnormal behaviours are likely to have distinct risk factors and treatments. We therefore investigated the convergent validity of four hypothesized subcategories of abnormal behaviours (‘motor’, e.g., pacing; ‘self-stimulation’, e.g., self-sucking; ‘postural’, e.g., hanging; and ‘self-abuse’, e.g., self-biting). This hypothesis predicts positive relationships between the behaviours within each subcategory. Rhesus macaque (Macaca mulatta) data on 19 abnormal behaviours were obtained from indoor-housed animals (n = 1183). Logistic regression models, controlling for sex, age, and the number of observations, revealed that only 1/6 ‘motor’ behaviours positively predicted pacing, while 2/3 ‘self-abuse’ behaviours positively predicted self-biting (one-tailed p-value < 0.05). Furthermore, ‘self-stimulation’ behaviours did not predict self-sucking, and none of the ‘postural’ behaviours predicted hanging. Thus, none of the subcategories fully met convergent validity. Subsequently, we created four new valid subcategories formed of comorbid behaviours. The first consisted of self-biting, self-hitting, self-injurious behaviour, floating limb, leg-lifting, and self-clasping. The second comprised twirling, bouncing, rocking, swinging, and hanging. The third comprised pacing and head-twisting, while the final subcategory consisted of flipping and eye-poking. Self-sucking, hair-plucking, threat-biting, and withdrawn remained as individual behaviours. We encourage laboratories to replicate the validation of these subcategories first, and for scientists working with other species to validate their ethograms before using them in welfare assessments. Full article
(This article belongs to the Special Issue Non-human Primates: Emotion, Cognition and Welfare)
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15 pages, 2769 KB  
Article
The Symmetries in Film and Television Production Areas Based on Virtual Reality and Internet of Things Technology
by Zheng Xie
Symmetry 2020, 12(8), 1377; https://doi.org/10.3390/sym12081377 - 18 Aug 2020
Cited by 7 | Viewed by 4653
Abstract
To enrich the form of film and television production, improve the level of film and television production, and satisfy the film-watching experiences of audiences, based on Virtual Reality (VR) and the Internet of Things (IoT) technology, with the help of S3 Studio Max [...] Read more.
To enrich the form of film and television production, improve the level of film and television production, and satisfy the film-watching experiences of audiences, based on Virtual Reality (VR) and the Internet of Things (IoT) technology, with the help of S3 Studio Max and Photoshop software, a VR film-watching system is built, which realizes the interaction with users on different devices through somatosensory interaction sensors. In addition, by utilizing Twirling720, the panoramic sound recording is achieved. Through this system, a smart IoT platform between users, films, and devices is built. Finally, this platform is utilized to produce the film and television work Van Gogh in Dream, which is evaluated and analyzed through questionnaires. The results show that the technology system of this set of film and television production is complete, and the production level of film and television works have been significantly improved. The audience recognition of film and television production based on this technology is 55%, and the impression evaluation is over 56%. However, knowledge acquisition is only 20%, and historical understanding is above 50%. These dimensions show that compared with traditional film production, artificial intelligence films can bring a better experience to audiences, but knowledge acquisition is less. Therefore, professional knowledge will be improved at the later stage. The above results provide a theoretical basis for the application of artificial intelligence technology in film production and production mode. Full article
(This article belongs to the Special Issue Symmetries in Art, Nature, and Biomolecules)
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17 pages, 447 KB  
Article
The Effect of Upgrades to Childcare Outdoor Spaces on Preschoolers’ Physical Activity: Findings from a Natural Experiment
by Michelle Ng, Michael Rosenberg, Ashleigh Thornton, Leanne Lester, Stewart G. Trost, Pulan Bai and Hayley Christian
Int. J. Environ. Res. Public Health 2020, 17(2), 468; https://doi.org/10.3390/ijerph17020468 - 10 Jan 2020
Cited by 25 | Viewed by 5815
Abstract
Physical inactivity is a significant risk factor for childhood obesity. Preventing obesity in the early years reduces the risk of developing chronic health conditions later. Early childhood education and care (ECEC) services are important settings to establish good preschooler physical activity behaviors. This [...] Read more.
Physical inactivity is a significant risk factor for childhood obesity. Preventing obesity in the early years reduces the risk of developing chronic health conditions later. Early childhood education and care (ECEC) services are important settings to establish good preschooler physical activity behaviors. This natural experiment investigated the influence of ECEC outdoor physical environment upgrade on preschoolers’ physical activity (aged 2–5 years). Centers implemented upgrades without researcher input. Physical activity was measured by 7-day accelerometry for intervention (n = 159; 6 centers) and control (n = 138; 5 centers) groups. ECEC outdoor space was assessed using a modified Environment and Policy Assessment and Observation (EPAO) Instrument. Key outcomes were measured at baseline and 6–12 months follow-up. Fixed sandboxes, balls, portable slides, portable floor play equipment (e.g., tumbling mats), and natural grassed areas were positively associated with activity levels; fixed tunnels and twirling equipment were negatively associated with activity levels (all p < 0.05). Post-upgrade portable play equipment (balls, twirling equipment, slides, floor play equipment) increased intervention preschoolers’ moderate-vigorous physical activity (MVPA) levels compared to control (p < 0.05). Intervention preschoolers were more active than control at follow-up (58.09 vs. 42.13 min/day increase in total physical activity; 30.46 vs. 19.16 min/day increase in MVPA (all p < 0.001)). Since few preschoolers meet daily activity recommendations while at ECEC, the findings may help ECEC providers to optimize outdoor physical environments and encourage more active play among preschoolers. Full article
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