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Keywords = non-metric multidimensional scaling (NMS)

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16 pages, 5345 KB  
Article
Sensory Evaluation and Spectra Evolution of Two Kiwifruit Cultivars during Cold Storage
by Andreia M. Afonso, Rui Guerra, Sandra Cruz and Maria D. Antunes
Horticulturae 2023, 9(7), 772; https://doi.org/10.3390/horticulturae9070772 - 6 Jul 2023
Cited by 5 | Viewed by 2298
Abstract
Kiwifruit consumption has increased due to its rich nutritional properties. Although ‘Hayward’ continues to be the main cultivar, others, such as yellow fleshed ‘Jintao’, are of increasing interest. The objective of this research was to evaluate the acceptability and storage performance of these [...] Read more.
Kiwifruit consumption has increased due to its rich nutritional properties. Although ‘Hayward’ continues to be the main cultivar, others, such as yellow fleshed ‘Jintao’, are of increasing interest. The objective of this research was to evaluate the acceptability and storage performance of these two cultivars. Sensory evaluation of green ‘Hayward’ and yellow ‘Jintao’ kiwifruit were performed along cold storage for three seasons/years to follow the organoleptic characteristics through ripening, as well as the acquisition of their spectra by Vis-NIR. For ‘Jintao’ were performed two sensory evaluations per year at 2.5- and 4.5-months’ storage and for ‘Hayward’ at 2.5-, 4.5- and 5.5-months’ storage. The nonparametric Mann–Whitney test and Kruskal–Wallis ANOVA were performed to test the significant differences between the mean ranks among the storage time. A non-metric multidimensional scaling plot method using the ALSCAL algorithm in a seven-point Likert scale was applied to determine the relationships in the data, and a new approach using the receiver operating characteristic (ROC) analysis was tested. The last revealed that, for both cultivars, sweetness, acidity and texture were the variables with better scores for General flavor. Aroma was also important on ‘Jintao’. A strong correlation between soluble solids content (SSC) and reflectance was found for both cultivars, with the 635–780 nm range being the most important. Regarding firmness, a good correlation with reflectance spectra was observed, particularly in ‘Hayward’ kiwifruit. Based on these results, Vis-NIR can be an objective alternative to explore for determination of the optimum eating-ripe stage. Full article
(This article belongs to the Collection Postharvest Handling of Horticultural Crops)
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11 pages, 1080 KB  
Article
Inventory and Assemblage Classification of the Freshwater Mussels (Mollusca: Unionidae) of the Strawberry River, Arkansas, USA, with Implications for Conservation Planning
by Alan D. Christian, Sean T. McCanty, Sujata Poudel, Steve W.A. Chordas and John L. Harris
Diversity 2021, 13(2), 86; https://doi.org/10.3390/d13020086 - 18 Feb 2021
Cited by 1 | Viewed by 2983
Abstract
Spatial hierarchical approaches to classify freshwater systems can add to our understanding of biogeographical patterns and can be used for biodiversity conservation planning. The Strawberry River is located primarily in the Ozark Highlands Central Plateau of north central Arkansas, USA, with a small [...] Read more.
Spatial hierarchical approaches to classify freshwater systems can add to our understanding of biogeographical patterns and can be used for biodiversity conservation planning. The Strawberry River is located primarily in the Ozark Highlands Central Plateau of north central Arkansas, USA, with a small downstream portion in the Mississippi Alluvial Plain and has been designated an Extraordinary Resource Water, an Ecologically Sensitive Water Body, and a Natural Scenic Waterway. The goals of this study were to document Strawberry River, Arkansas freshwater mussels to aid in conservation planning. Our first objective was to inventory freshwater mussel species in the Strawberry River. Our second objective was to use this stream-wide dataset to classify the freshwater mussel assemblages. We used unpublished survey data of 59 sites distributed from the headwaters to the mouth to inventory species occurrence and abundance, classified mussel assemblages using non-metric multi-dimensional scaling (NMS), and conducted indicator species analysis on resulting assemblages. We observed 39 taxa across the 59 survey sites including two S1, five S2, 16 S3, 11 S4, four S5, and one state non-ranked conservation rank species. Furthermore, our assemblage NMS revealed two distinct freshwater mussel assemblages roughly organized by an upstream (Sites 1–31) to downstream (Sites 32–59) gradient. There were five upstream indicator species and 13 downstream indicator species. This study provides a case study on using existing datasets with NMS and indicator species analyses to classify mussel assemblages and adds to our understanding of freshwater mussel fauna classification at smaller spatial scales. Both NMS and indicator species outcomes can aid in conservation planning for freshwater mussels. Full article
(This article belongs to the Special Issue Freshwater Mollusk Conservation)
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29 pages, 3361 KB  
Article
Small-Scale Environmental Drivers of Plant Community Structure and Diversity in Neotropical Montane Cloud Forests Harboring Threatened Magnolia dealbata in Southern Mexico
by Reyna Domínguez-Yescas, José Antonio Vázquez-García, Miguel Ángel Muñiz-Castro, Gerardo Hernández-Vera, Eduardo Salcedo-Pérez, Ciro Rodríguez-Pérez and Sergio Ignacio Gallardo-Yobal
Diversity 2020, 12(12), 444; https://doi.org/10.3390/d12120444 - 24 Nov 2020
Cited by 7 | Viewed by 4383
Abstract
Gradient analysis was used to determine factors driving small-scale variation of cloud forest communities harboring Magnolia dealbata, a threatened species and bioculturally relevant tree for the Chinantecan, Mazatecan, Nahuan, and Zapotecan ethnicities in southern Mexico. Particularly, we aimed to: (a) determine factors [...] Read more.
Gradient analysis was used to determine factors driving small-scale variation of cloud forest communities harboring Magnolia dealbata, a threatened species and bioculturally relevant tree for the Chinantecan, Mazatecan, Nahuan, and Zapotecan ethnicities in southern Mexico. Particularly, we aimed to: (a) determine factors explaining major community gradients at different heterogeneity scales along a small-scale elevational gradient, (b) test the Decreasing and the Continuum hypotheses along elevation, and (c) classify vegetation to assist in identifying conservation priorities. We used a stratified random sampling scheme for 21 woody stands along a small-scale (352 m) elevational transect. Four main data matrices were used (presence-absence, density, basal area, and guild data). Through Non-metric Multidimensional Scaling (NMS), Principal Coordinates Analysis (PCoA), and distance-based Redundancy Analysis (db-RDA), we found that major community variation was explained by soil pH, displaying an outstanding vegetation discontinuity, separating the species-rich relic Oreomunnea-Ticodendron-stands from stands with higher importance values for M. dealbata. The high species richness observed was explained by a combination of the windward effect of dry-seasonal maximum cloud condensation gain and habitat differentiation-specialization, a phenomenon that may also explain the mid-peak hypothesis and ensure the survival of relic species. Sampling-truncation and conservation status also played a role in this. Our results do not support the Decreasing and Continuum hypotheses along elevation. Full article
(This article belongs to the Special Issue Vascular Plant Diversity at Different Scales)
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15 pages, 1784 KB  
Article
Effects of Student-Induced Trampling on Aquatic Macroinvertebrates in Agricultural Headwater Streams
by Jon P. Bossley and Peter C. Smiley
Water 2018, 10(1), 77; https://doi.org/10.3390/w10010077 - 17 Jan 2018
Cited by 3 | Viewed by 4570
Abstract
Outdoor education (OE) stream classes provide students with an opportunity to gain hands-on experience with sampling methods for evaluating stream water quality. Trampling by students as a result of stream classes may disrupt the substrate and negatively impact aquatic macroinvertebrates. The impact of [...] Read more.
Outdoor education (OE) stream classes provide students with an opportunity to gain hands-on experience with sampling methods for evaluating stream water quality. Trampling by students as a result of stream classes may disrupt the substrate and negatively impact aquatic macroinvertebrates. The impact of student-induced trampling in headwaters as a result of stream classes on aquatic macroinvertebrates has not been evaluated. Our aim was to document the short-term macroinvertebrate responses to an experimental disturbance that simulated the impacts of trampling by students in riffles within small headwater streams. We measured hydrologic variables, visually estimated substrate composition and sampled aquatic macroinvertebrates within control and experimental riffles in three agricultural headwater streams in central Ohio one day prior to experimental disturbance, immediately after disturbance and one day after disturbance. Hydrologic variables and substrate type did not differ daily or between riffle types. Macroinvertebrate abundance, percentage of Ephemeroptera Plecoptera Trichoptera and percentage of Leuctridae increased after experimental disturbance, while diversity, evenness, percentage of clingers and non-metric multidimensional scaling (NMS) axis 1 site scores declined after disturbance. Macroinvertebrate diversity, percent clingers and NMS axis 1 site scores were lower in experimental riffles than control riffles. None of the macroinvertebrate response variables exhibited a significant interaction effect of day × riffle type that is indicative of an effect of the experimental disturbance. Our results suggest the one-time use of an undisturbed riffle within an agricultural headwater stream for an OE stream class is not likely to impact aquatic macroinvertebrates. Full article
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13 pages, 2303 KB  
Article
Diversity and Distribution of Endemic Stream Insects on a Nationwide Scale, South Korea: Conservation Perspectives
by Mi-Jung Bae and Young-Seuk Park
Water 2017, 9(11), 833; https://doi.org/10.3390/w9110833 - 30 Oct 2017
Cited by 13 | Viewed by 6141
Abstract
This study aimed to identify the biogeographical and environmental factors affecting the biodiversity of endemic aquatic species (i.e., Ephemeroptera, Plecoptera and Trichoptera; EPT). We used data collected from 714 sampling sites combined with 39 environmental factors. Ten EPT endemic species were identified. The [...] Read more.
This study aimed to identify the biogeographical and environmental factors affecting the biodiversity of endemic aquatic species (i.e., Ephemeroptera, Plecoptera and Trichoptera; EPT). We used data collected from 714 sampling sites combined with 39 environmental factors. Ten EPT endemic species were identified. The sampling sites grouped into four clusters based on the similarities of the endemic EPT assemblages using a hierarchical cluster analysis. Non-metric multidimensional scaling (NMS) revealed the differences among the four clusters, with the first three axes being strongly related to annual average, August, and January temperatures, as well as altitude. The random forest model identified geological and meteorological factors as the main factors influencing species distribution, even though the contributions of environmental factors were species-specific. Species with the lower occurrence frequency (i.e., Pteronarcys macra, Kamimuria coreana, and Psilotreta locumtenens) mainly occurred in the least-disturbed habitats. P. macra represents a priority conservation species, because it has a limited distribution range and is highly vulnerable to anthropogenic disturbance. Our results support the need for an environmental management policy to regulate deforestation and conserve biodiversity, including endemic species. Full article
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15 pages, 1121 KB  
Article
Spatio-Temporal Variability in Benthic Macroinvertebrate Communities in Headwater Streams in South Korea
by Mi-Jung Bae, Jung Hwa Chun, Tae-Soo Chon and Young-Seuk Park
Water 2016, 8(3), 99; https://doi.org/10.3390/w8030099 - 12 Mar 2016
Cited by 16 | Viewed by 6888
Abstract
Comprehensive research on the structural and functional variability of benthic macroinvertebrate communities within headwater streams is limited, despite the fact that the majority of streams within a watershed are headwater streams that form the primary link between terrestrial and aquatic ecosystems. Therefore, we [...] Read more.
Comprehensive research on the structural and functional variability of benthic macroinvertebrate communities within headwater streams is limited, despite the fact that the majority of streams within a watershed are headwater streams that form the primary link between terrestrial and aquatic ecosystems. Therefore, we investigated the structure and function of benthic macroinvertebrate communities in four headwater streams at two different spatial scales (i.e., sampling sites (i.e., reaches) >samples (i.e., riffles)) over three seasons (i.e., spring, summer and autumn) of the year. Community indices, functional feeding guilds and habit trait guilds varied significantly depending on the seasons rather than on sites in two-way ANOVA based on spatial (i.e., sampling sites) and seasonal effects in each headwater stream. Non-metric multidimensional scaling analyses showed the differences between communities according to the considered spatial and temporal scales. At the individual stream scale, the differences between samples followed seasonal variation more than spatial differences. Site differences became more important when performing an ordination within a single season (i.e., spring, summer, and autumn). Continued research and monitoring employing both multidisciplinary and multidimensional approaches are required to maintain macroinvertebrate diversity within headwater streams. Full article
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