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Keywords = milled rice recovery

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15 pages, 3210 KiB  
Article
Identifying the Quantitative Trait Locus and Candidate Genes of Traits Related to Milling Quality in Rice via a Genome-Wide Association Study
by Changmin Hu, Xinru Li, Mengyuan Zhang, Chunyu Jing, Mei Hai, Jiaming Shen, Qing Xu, Xiaojing Dang, Yingyao Shi, Erbao Liu and Jianhua Jiang
Plants 2024, 13(10), 1324; https://doi.org/10.3390/plants13101324 - 11 May 2024
Viewed by 1309
Abstract
Milling quality directly affects production efficiency in rice, which is closely related to the brown rice recovery (BRR), the milled rice recovery (MRR) and the head milled rice recovery (HMRR). The present study investigated these three traits in 173 germplasms in two environments, [...] Read more.
Milling quality directly affects production efficiency in rice, which is closely related to the brown rice recovery (BRR), the milled rice recovery (MRR) and the head milled rice recovery (HMRR). The present study investigated these three traits in 173 germplasms in two environments, finding abundant phenotypic variation. Three QTLs for BRR, two for MRR, and three for HMRR were identified in a genome-wide association study, five of these were identified in previously reported QTLs and three were newly identified. By combining the linkage disequilibrium (LD) analyses, the candidate gene LOC_Os05g08350 was identified. It had two haplotypes with significant differences and Hap 2 increased the BRR by 4.40%. The results of the qRT-PCR showed that the expression of LOC_Os05g08350 in small-BRR accessions was significantly higher than that in large-BRR accessions at Stages 4–5 of young panicle development, reaching the maximum value at Stage 5. The increase in thickness of the spikelet hulls of the accession carrying LOC_Os05g08350TT occurred due to an increase in the cell width and the cell numbers in cross-sections of spikelet hulls. These results help to further clarify the molecular genetic mechanism of milling-quality-related traits and provide genetic germplasm materials for high-quality breeding in rice. Full article
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9 pages, 788 KiB  
Case Report
The Improvement in Head Milled Rice Yield in Middle-Season Hybrid Rice: Evidence from a Case Study of Two Cultivars Released 18 Years Apart
by Jialin Cao, Ruichun Zhang, Jiana Chen, Fangbo Cao, Longsheng Liu, Shengliang Fang, Ming Zhang and Min Huang
Agronomy 2023, 13(2), 407; https://doi.org/10.3390/agronomy13020407 - 30 Jan 2023
Viewed by 1542
Abstract
Head milled rice is the main form of rice for sale and consumption. However, previous studies on the yield change due to the development of new cultivars in rice generally focus on grain yield but few on head milled rice yield. In this [...] Read more.
Head milled rice is the main form of rice for sale and consumption. However, previous studies on the yield change due to the development of new cultivars in rice generally focus on grain yield but few on head milled rice yield. In this study, field experiments were conducted in two years (2019 and 2020) to compare head milled rice yield and associated traits (grain yield, milled recovery traits, and shape and chalkiness traits of rice grains) between two middle-season hybrid rice cultivars released 18 years apart, i.e., Jingliangyou 1468 (JLY1468), a recently-released cultivar with high eating quality, and Liangyoupeijiu (LYPJ), an old cultivar with high grain yield. JLY1468 had higher head milled rice yield than LYPJ by 30% in 2019 and by 33% in 2020. The higher head milled rice yield in JLY1468 than in LYPJ was attributable to improvements in both grain yield, and head milled rice rate (HMRR). The improvement in HMRR in JLY1468 compared to LYPJ was mainly attributable to a reduction in chalkiness degree, which was associated with a decrease in rice grain size. The results of this study provide evidence for the improvement in head milled rice yield in middle-season hybrid rice with the development of new cultivars in recent years. Full article
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21 pages, 1519 KiB  
Article
Genetic Evaluation of a Diverse Rice Panel for Direct Seeded Adapted Traits Using Kompetitive Allele Specific Primer Assay
by Harpreet Singh, Jasneet Singh, Pooja Ankush Ade, Om Prakash Raigar, Rupinder Kaur, Renu Khanna, Gurjit Singh Mangat and Nitika Sandhu
Agronomy 2022, 12(9), 2083; https://doi.org/10.3390/agronomy12092083 - 1 Sep 2022
Cited by 1 | Viewed by 3529
Abstract
Direct seeded rice (DSR) cultivation is an attractive non-conventional technology for growing rice. It saves labor, water, energy, and takes 5 to 7 days for early crop maturity. The yield advantage in DSR can be obtained by implementing various cultural practices including proper [...] Read more.
Direct seeded rice (DSR) cultivation is an attractive non-conventional technology for growing rice. It saves labor, water, energy, and takes 5 to 7 days for early crop maturity. The yield advantage in DSR can be obtained by implementing various cultural practices including proper sowing time and seed rate, selection of suitable cultivars with appropriate management of weeds and water. The present study involves the agronomic and molecular screening of advanced breeding lines under direct seeded as well as transplanted conditions, so as to identify DSR adapted genotypes. Significant variations among genotypes have been observed for most of the traits measured in the present study. The yield under DSR was comparable to TPR but the grain quality was not comparable, and poor milling and head rice recovery were observed. Molecular characterization using 106 Kompetitive Allele-Specific PCR assays (KASP) was performed. The best performing genotypes with different allele combinations under DSR were PAU 6456-8-2-1-1-1, PAU 5187-RIL1649-F8, PAU 6456-8-1-1-1-3, PAU 6456-8-2-1-1-2, NVSR 2107, and PAU 6778-12-1-4-1-1. The selected genotypes performed better in terms of traits associated with seedling establishment, root architecture, yield, and yield-related traits. The identified promising breeding lines may serve as novel donors to be further used in a marker-assisted selection program which target improving the grain yield and adaptability under DSR. Full article
(This article belongs to the Special Issue Agronomy of Direct-Seeded Rice)
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16 pages, 2452 KiB  
Article
Development of Broad Spectrum and Durable Bacterial Blight Resistant Variety through Pyramiding of Four Resistance Genes in Rice
by Kartik Chandra Pradhan, Elssa Pandit, Shakti Prakash Mohanty, Arpita Moharana, Priyadarsini Sanghamitra, Jitendriya Meher, Binod Kumar Jena, Prasanta K. Dash, Lambodar Behera, Pavitra Mohan Mohapatra, Debendra Nath Bastia and Sharat Kumar Pradhan
Agronomy 2022, 12(8), 1903; https://doi.org/10.3390/agronomy12081903 - 14 Aug 2022
Cited by 22 | Viewed by 3170
Abstract
Bacterial blight (BB) disease caused by Xanthomonas oryzae pv. oryzae is a major biotic constraint on obtaining higher grain yields in rice. Marker-assisted backcross breeding (MABB) was performed by the pyramiding of Xa4, xa5, xa13 and Xa21 resistance genes in the [...] Read more.
Bacterial blight (BB) disease caused by Xanthomonas oryzae pv. oryzae is a major biotic constraint on obtaining higher grain yields in rice. Marker-assisted backcross breeding (MABB) was performed by the pyramiding of Xa4, xa5, xa13 and Xa21 resistance genes in the popular variety, Ranidhan. A foreground selection in BC1F1, BC2F1, and BC3F1 progenies detected all the target genes in 12, 7 and 16 progenies by using the closely linked markers from a population size of 446, 410, and 530, respectively. The BB-positive progenies carrying the target genes with a maximal similarity to the recipient parent was backcrossed in each backcross generation. A total of 1784 BC3F2 seeds were obtained from the best BC3F1 progeny. The screening of the BC3F2 progenies for the four target genes resulted in eight plants carrying all the four target genes. A bioassay of the pyramided lines conferred very high levels of resistance to the predominant isolates of bacterial blight disease. In addition, these pyramided lines were similar to Ranidhan in 16 morpho-quality traits, namely, plant height, filled grains/panicle, panicles/plant, grain length, grain breadth, grain weight, milling, head rice recovery, kernel length after cooking, water uptake, the volume expansion ratio, gel consistency, alkali-spreading value, and the amylose content. Full article
(This article belongs to the Special Issue Molecular and Genetic Mechanisms of Plant Disease Resistance)
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21 pages, 9115 KiB  
Article
Dispersive Liquid–Liquid Microextraction (DLLME) and LC-MS/MS Analysis for Multi-Mycotoxin in Rice Bran: Method Development, Optimization and Validation
by Sofiyatul Akmal Salim, Rashidah Sukor, Mohd Nazri Ismail and Jinap Selamat
Toxins 2021, 13(4), 280; https://doi.org/10.3390/toxins13040280 - 15 Apr 2021
Cited by 40 | Viewed by 5369
Abstract
Rice bran, a by-product of the rice milling process, has emerged as a functional food and being used in formulation of healthy food and drinks. However, rice bran is often contaminated with numerous mycotoxins. In this study, a method to simultaneous detection of [...] Read more.
Rice bran, a by-product of the rice milling process, has emerged as a functional food and being used in formulation of healthy food and drinks. However, rice bran is often contaminated with numerous mycotoxins. In this study, a method to simultaneous detection of aflatoxins (AFB1, AFB2, AFG1, and AFG2), ochratoxin A (OTA), deoxynivalenol (DON), fumonisins (FB1 and FB2), sterigmatocystin (STG), T-2 toxin, HT-2 toxin, diacetoxyscirpenol (DAS) and zearalenone (ZEA) in rice bran was developed, optimized and validated using dispersive liquid–liquid microextraction (DLLME) and liquid chromatography-tandem mass spectrometry (LC-MS/MS). In DLLME, using a solvent mixture of methanol/water (80:20, v/v) as the dispersive solvent and chloroform as the extraction solvent with the addition of 5% salt improved the extraction recoveries (63–120%). The developed method was further optimized using the response surface methodology (RSM) combined with Box–Behnken Design (BBD). Under the optimized experimental conditions, good linearity was obtained with a correlation coefficient (r2) ≥ 0.990 and a limit of detection (LOD) between 0.5 to 50 ng g−1. The recoveries ranged from 70.2% to 99.4% with an RSD below 1.28%. The proposed method was successfully applied to analyze multi-mycotoxin in 24 rice bran samples. Full article
(This article belongs to the Section Mycotoxins)
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18 pages, 4052 KiB  
Article
Alkaline Fractionation and Subsequent Production of Nano-Structured Silica and Cellulose Nano-Fibrils for the Comprehensive Utilization of Rice Husk
by Hyun Jin Jung, Hyun Kwak, Jinyoung Chun and Kyeong Keun Oh
Sustainability 2021, 13(4), 1951; https://doi.org/10.3390/su13041951 - 11 Feb 2021
Cited by 10 | Viewed by 2987
Abstract
The parameters of the alkaline fractionation process were investigated and optimized using a statistical analysis method to simultaneously remove hemicellulose and ash from rice husk (RH) concomitantly. After the alkaline fractionation process, the residual solid contained high cellulose, and the recovery yield of [...] Read more.
The parameters of the alkaline fractionation process were investigated and optimized using a statistical analysis method to simultaneously remove hemicellulose and ash from rice husk (RH) concomitantly. After the alkaline fractionation process, the residual solid contained high cellulose, and the recovery yield of hemicellulose was enhanced in the fractionated liquid hydrolyzate. The hemicellulosic sugar recovery yield (71.6%), de-ashing yield (>99%), and lignin removal (>80%) were obtained at the reaction conditions of 150 °C of temperature, 40 min of reaction time, and 6% (w/v) of NaOH concentration. Subsequently, nano-structured silica was synthesized using black liquor obtained as a by-product of this fractionation process. For the production of nano-structured silica, it was observed that the pH of a black liquor and the heat treatment temperature significantly influenced the textural properties of silica product. In addition, the two-stage bleaching of solid residue followed by colloid milling for the production of high value-added CNF with was attempted. As a result, in addition to 119 g of fermentable sugar, 143 g of high-purity (>98%) silica with a surface area of 328 m2g−1 and 273.1 g of high-functional CNF with cellulose content of 80.1% were simultaneously obtained from 1000 g of RH. Full article
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15 pages, 2323 KiB  
Article
Influence of Nitrogen Management Regimes on Milling Recovery and Grain Quality of Aromatic Rice in Different Rice Production Systems
by Muhammad Ishfaq, Nadeem Akbar, Usman Zulfiqar, Saddam Hussain, Khadija Murtza, Zarina Batool, Umair Ashraf, Mohammed Nasser Alyemeni and Parvaiz Ahmad
Agronomy 2020, 10(11), 1841; https://doi.org/10.3390/agronomy10111841 - 23 Nov 2020
Cited by 18 | Viewed by 4505
Abstract
To examine the effect of nitrogen (N) management regimes on rice quality in different rice production systems, a field experiment was conducted in 2017 and 2018. The experimental treatments comprised of two production systems (transplanted rice: TPR and dry direct-seeded rice: DDSR) and [...] Read more.
To examine the effect of nitrogen (N) management regimes on rice quality in different rice production systems, a field experiment was conducted in 2017 and 2018. The experimental treatments comprised of two production systems (transplanted rice: TPR and dry direct-seeded rice: DDSR) and six N management treatments (0, 50, 100, and 150 kg N ha−1 as basal, and 100 and 150 kg N ha−1 in three splits which were regarded as N1, N2, N3, N4, N5, and N6, respectively). The results revealed that the rice quality attributes, i.e., broken rice recovery, abortive kernel, bursting, and curling were increased by 8%, 14%, 8%, and 14%, respectively, under DDSR than TPR. In the case of N management, split application of N reduced the chalky kernel (44%), abortive kernel (23%), opaque kernel (31%), bursting (24%), and curling (31%), while kernel protein contents, water absorption ratio, cooked grain length, and elongation ratio were increased by 41%, 88%, 25%, and 26%, respectively, as compared to the basal application of N. In short, DDSR cultivation reduced the appearance and cooking quality traits but white head rice recovery and nutritional quality were comparable to TPR. However, N application in splits either in DDSR or in TPR potentially improved the grain quality of rice compared with the basal application. Full article
(This article belongs to the Special Issue Cereal Biofortification: Strategies, Challenges and Benefits)
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13 pages, 705 KiB  
Article
Identification and Verification of Quantitative Trait Loci Affecting Milling Yield of Rice
by Hui Zhang, Yu-Jun Zhu, An-Dong Zhu, Ye-Yang Fan, Ting-Xu Huang, Jian-Fu Zhang, Hua-An Xie and Jie-Yun Zhuang
Agronomy 2020, 10(1), 75; https://doi.org/10.3390/agronomy10010075 - 5 Jan 2020
Cited by 12 | Viewed by 3635
Abstract
Rice is generally consumed in the form of milled rice. The yield of total milled rice and head mill rice is affected by both the paddy rice yield and milling efficiency. In this study, three recombinant inbred line (RIL) populations and one F [...] Read more.
Rice is generally consumed in the form of milled rice. The yield of total milled rice and head mill rice is affected by both the paddy rice yield and milling efficiency. In this study, three recombinant inbred line (RIL) populations and one F4:5 population derived from a residual heterozygous (RH) plant were used to determine quantitative trait loci (QTLs) affecting milling yield of rice. Seven traits were analyzed, including recovery of brown rice (BR), milled rice (MR) and head rice (HR); grain yield (GY); and the yield of brown rice (BRY), milled rice (MRY) and head rice (HRY). A total of 77 QTLs distributed on 35 regions was detected in the three RIL populations. Four regions, where qBR5, qBR7, qBR10, and qBR12 were located, were validated in the RH-derived F4:5 population. In the three RIL populations, all the 11 QTLs for GY detected were accompanied with QTLs for two or all the three milling yield traits. Not only the allele direction for milling yield traits was unchanged, but also the effects were consistent with GY. In the RH-derived F4:5 population, regions controlling GY also affected all three milling yield traits. Results indicated that variations of BRY and MRY were mainly ascribed to GY, but HRY was determined by both GY and HR. Results also showed that the regions covering GW5Chalk5 and Wx loci had major effects on milling quality and milling yield of rice. These two regions, which have been known to affect multiple traits determining grain quality and yield of rice, provide good candidates for milled yield improvement. Full article
(This article belongs to the Special Issue Molecular Marker Technology for Crop Improvement)
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12 pages, 229 KiB  
Article
Putting Plant Genetic Diversity and Variability at Work for Breeding: Hybrid Rice Suitability in West Africa
by Raafat El-Namaky, Mamadou M. Bare Coulibaly, Maji Alhassan, Karim Traore, Francis Nwilene, Ibnou Dieng, Rodomiro Ortiz and Baboucarr Manneh
Diversity 2017, 9(3), 27; https://doi.org/10.3390/d9030027 - 10 Jul 2017
Cited by 6 | Viewed by 5722
Abstract
Rice is a staple food in West Africa, where its demand keeps increasing due to population growth. Hence, there is an urgent need to identify high yielding rice cultivars that fulfill this demand locally. Rice hybrids are already known to significantly increase productivity. [...] Read more.
Rice is a staple food in West Africa, where its demand keeps increasing due to population growth. Hence, there is an urgent need to identify high yielding rice cultivars that fulfill this demand locally. Rice hybrids are already known to significantly increase productivity. This study evaluated the potential of Asian hybrids with good adaptability to irrigated and rainfed lowland rice areas in Mali, Nigeria, and Senegal. There were 169 hybrids from China included in trials at target sites during 2009 and 2010. The genotype × environment interaction was highly significant (p < 0.0001) for grain yield indicating that the hybrids’ and their respective cultivar checks’ performance differed across locations. Two hybrids had the highest grain yield during 2010 in Mali, while in Nigeria, four hybrids in 2009 and one hybrid in 2010 had higher grain yield and matured earlier than the best local cultivar. The milling recovery, grain shape and cooking features of most hybrids had the quality preferred by West African consumers. Most of the hybrids were, however, susceptible to African rice gall midge (AfRGM) and Rice Yellow Mottle Virus (RMYV) isolate Ng40. About 60% of these hybrids were resistant to blast. Hybrids need to incorporate host plant resistant for AfRGM and RYMV to be grown in West Africa. Full article
(This article belongs to the Special Issue Plant Genetics and Biotechnology in Biodiversity)
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