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Keywords = in situ respirometry

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21 pages, 6704 KB  
Article
A Methodology for Evaluating the Distribution of Dissolved Oxygen in Aquaculture Ponds: An Approach Based on In Situ Respirometry and Computational Fluid Dynamics
by Aylin Trujillo-Rogel, Iván Gallego-Alarcón, Boris Miguel López-Rebollar, David García-Mondragón, Iván Cervantes-Zepeda, Ricardo Arévalo-Mejía and Jesús Ramiro Félix-Félix
Aquac. J. 2026, 6(1), 1; https://doi.org/10.3390/aquacj6010001 - 19 Dec 2025
Viewed by 1130
Abstract
Inefficient management of dissolved oxygen (DO) in intensive aquaculture systems limits fish welfare and productivity by creating oxygen-deficient zones and promoting hydrodynamic conditions that hinder their dispersion. Because water movement directly influences how oxygen is transported and mixed within the culture unit, inadequate [...] Read more.
Inefficient management of dissolved oxygen (DO) in intensive aquaculture systems limits fish welfare and productivity by creating oxygen-deficient zones and promoting hydrodynamic conditions that hinder their dispersion. Because water movement directly influences how oxygen is transported and mixed within the culture unit, inadequate flow management can allow localized hypoxia to persist even when total oxygen input appears sufficient. To address this issue, this study proposes an integrated methodology that combines in situ respirometry measurements with Computational Fluid Dynamics (CFD) simulations to evaluate the spatial distribution of DO and diagnose the operational performance of aquaculture systems. The methodology quantifies oxygen consumption using intermittent-flow respirometry, applies a three-dimensional two-phase CFD model (water–oxygen) incorporating experimental oxygen consumption rates as boundary conditions, and validates the model under real operating conditions, focusing on active metabolism as the most demanding physiological state. The model generates a spatial distribution of DO patterns that are significantly modified by pond geometry, water flow characteristics, the metabolism of the fish and fish positioning. The differences between experimental and simulated values ranged from 7.8% to 10.7%, confirming the accuracy of the proposed method. The integration of in situ metabolic measurements with CFD modeling provides a realistic representation of DO dynamics, enabling system optimization and promoting more efficient and sustainable aquaculture. Full article
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14 pages, 3225 KB  
Communication
Metabolic Rates of Rainbow Trout Eggs in Reconstructed Salmonid Egg Pockets
by Rudy Benetti, Tobia Politi, Marco Bartoli and Nerijus Nika
Water 2024, 16(4), 612; https://doi.org/10.3390/w16040612 - 19 Feb 2024
Cited by 1 | Viewed by 2179
Abstract
In situ evaluations of the metabolic rates (i.e., respiration and excretion) of salmonid eggs are mostly indirect, focusing on the sampling of hyporheic water from wild or artificial nests. Comparatively, experimental studies carried out under controlled, laboratory conditions are less abundant due to [...] Read more.
In situ evaluations of the metabolic rates (i.e., respiration and excretion) of salmonid eggs are mostly indirect, focusing on the sampling of hyporheic water from wild or artificial nests. Comparatively, experimental studies carried out under controlled, laboratory conditions are less abundant due to methodological difficulties. This study presents a novel experimental setup aimed to address this issue and enable the measurement of oxygen and dissolved inorganic nitrogen fluxes in simulated rainbow trout (O. mykiss) egg pockets. The experimental setup consists of reconstructed egg pockets in cylindrical cores under flow-through conditions. Live and dead eyed-stage eggs were incubated in a natural, sterilised gravel substrate. Hyporheic water circulation was ensured using peristaltic pumps, with the possibility to collect and analyse inflowing and outflowing water for chemical analyses. Microcosm incubations, with closed respirometry of eggs in water alone, were also carried out in order to infer the importance of microbial respiration in the simulated egg pockets. The results show an increasing trend in oxygen demand, due to the development of biofilm in the reconstructed egg pockets and increased egg respiration rates. Moreover, egg pockets showed positive ammonium net fluxes connected with the advancing developmental egg stage, while nitrate removal peaked during the last phase of the experiment, mainly due to the formation of oxic-hypoxic interfaces, leading to couple nitrification–denitrification processes. The suggested approach enables to test a number of in situ situations, including the effects of extreme hydrological conditions, sediment clogging and sudden changes in water chemistry or temperature on the survival and metabolic performances of nests, at different egg development stages. Full article
(This article belongs to the Section Biodiversity and Functionality of Aquatic Ecosystems)
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8 pages, 975 KB  
Article
Mitochondrial Respiration Changes in R6/2 Huntington’s Disease Model Mice during Aging in a Brain Region Specific Manner
by Johannes Burtscher, Alba Di Pardo, Vittorio Maglione, Christoph Schwarzer and Ferdinando Squitieri
Int. J. Mol. Sci. 2020, 21(15), 5412; https://doi.org/10.3390/ijms21155412 - 30 Jul 2020
Cited by 15 | Viewed by 3338
Abstract
Mitochondrial dysfunction is crucially involved in aging and neurodegenerative diseases, such as Huntington’s Disease (HD). How mitochondria become compromised in HD is poorly understood but instrumental for the development of treatments to prevent or reverse resulting deficits. In this paper, we investigate whether [...] Read more.
Mitochondrial dysfunction is crucially involved in aging and neurodegenerative diseases, such as Huntington’s Disease (HD). How mitochondria become compromised in HD is poorly understood but instrumental for the development of treatments to prevent or reverse resulting deficits. In this paper, we investigate whether oxidative phosphorylation (OXPHOS) differs across brain regions in juvenile as compared to adult mice and whether such developmental changes might be compromised in the R6/2 mouse model of HD. We study OXPHOS in the striatum, hippocampus, and motor cortex by high resolution respirometry in female wild-type and R6/2 mice of ages corresponding to pre-symptomatic and symptomatic R6/2 mice. We observe a developmental shift in OXPHOS-control parameters that was similar in R6/2 mice, except for cortical succinate-driven respiration. While the LEAK state relative to maximal respiratory capacity was reduced in adult mice in all analyzed brain regions, succinate-driven respiration was reduced only in the striatum and cortex, and NADH-driven respiration was higher as compared to juvenile mice only in the striatum. We demonstrate age-related changes in respirational capacities of different brain regions with subtle deviations in R6/2 mice. Uncovering in situ oxygen conditions and potential substrate limitations during aging and HD disease progression are interesting avenues for future research to understand brain-regional vulnerability in HD. Full article
(This article belongs to the Special Issue Molecular Basis and Molecular Targets in Huntington’s Disease)
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10 pages, 231 KB  
Article
Impact of Cold Ischemia on Mitochondrial Function in Porcine Hearts and Blood Vessels
by Dominik Wiedemann, Thomas Schachner, Nikolaos Bonaros, Melissa Dorn, Martin Andreas, Alfred Kocher and Andrey V. Kuznetsov
Int. J. Mol. Sci. 2013, 14(11), 22042-22051; https://doi.org/10.3390/ijms141122042 - 7 Nov 2013
Cited by 14 | Viewed by 6878
Abstract
The effects of cold storage using Custodiol® (Histidine-Tryptophan-Ketoglutarate, HTK) or isotonic saline solution on mitochondrial function in hearts (left and rights ventricles) and various blood vessels of pigs were investigated. Hearts, saphenous veins, internal-mammary-arteries and aortas of male landrace pigs were harvested [...] Read more.
The effects of cold storage using Custodiol® (Histidine-Tryptophan-Ketoglutarate, HTK) or isotonic saline solution on mitochondrial function in hearts (left and rights ventricles) and various blood vessels of pigs were investigated. Hearts, saphenous veins, internal-mammary-arteries and aortas of male landrace pigs were harvested and exposed to cold ischemia in either saline or Custodiol-HTK solution. Mitochondrial function was measured in situ in permeabilized fibers by high-resolution respirometry. Mitochondrial respiratory capacities (maximal respiration rates) were similar in the right and left ventricle in controls and after 14 h of cold storage were significantly better preserved in Custodiol-HTK than in saline solution. Mitochondrial respiration rates in various blood vessels including aorta, arteries and veins were less than 5% of myocardium rates. In contrast to the pig heart, in some blood vessels, like veins, mitochondrial function remained stable even after 24 h of cold ischemia. HTK-Custodiol protection of mitochondrial function after prolonged cold ischemia was observed in the myocardium but not in blood vessels. HTK-Custodiol solution thus offers significant protection of myocardial mitochondria against cold ischemic injury and can be used as efficient preservation solution in organ transplantation but probably has no benefit for blood vessels preservation. Analysis of mitochondrial function can be used as a valuable approach for the assessment of cold ischemic injury in various tissues including pig heart and various blood vessels. Full article
(This article belongs to the Special Issue Oxidative Stress in Cardiovascular Disease)
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