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Keywords = flexible manifold embedding

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16 pages, 2594 KiB  
Article
Topological Reinforcement Adaptive Algorithm (TOREADA) Application to the Alerting of Convulsive Seizures and Validation with Monte Carlo Numerical Simulations
by Stiliyan Kalitzin
Algorithms 2024, 17(11), 516; https://doi.org/10.3390/a17110516 - 8 Nov 2024
Viewed by 1212
Abstract
The detection of adverse events—for example, convulsive epileptic seizures—can be critical for patients suffering from a variety of pathological syndromes. Algorithms using remote sensing modalities, such as a video camera input, can be effective for real-time alerting, but the broad variability of environments [...] Read more.
The detection of adverse events—for example, convulsive epileptic seizures—can be critical for patients suffering from a variety of pathological syndromes. Algorithms using remote sensing modalities, such as a video camera input, can be effective for real-time alerting, but the broad variability of environments and numerous nonstationary factors may limit their precision. In this work, we address the issue of adaptive reinforcement that can provide flexible applications in alerting devices. The general concept of our approach is the topological reinforced adaptive algorithm (TOREADA). Three essential steps—embedding, assessment, and envelope—act iteratively during the operation of the system, thus providing continuous, on-the-fly, reinforced learning. We apply this concept in the case of detecting convulsive epileptic seizures, where three parameters define the decision manifold. Monte Carlo-type simulations validate the effectiveness and robustness of the approach. We show that the adaptive procedure finds the correct detection parameters, providing optimal accuracy from a large variety of initial states. With respect to the separation quality between simulated seizure and normal epochs, the detection reinforcement algorithm is robust within the broad margins of signal-generation scenarios. We conclude that our technique is applicable to a large variety of event detection systems. Full article
(This article belongs to the Section Algorithms for Multidisciplinary Applications)
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15 pages, 1543 KiB  
Article
Multi-View Graph Fusion for Semi-Supervised Learning: Application to Image-Based Face Beauty Prediction
by Fadi Dornaika and Abdelmalik Moujahid
Algorithms 2022, 15(6), 207; https://doi.org/10.3390/a15060207 - 14 Jun 2022
Cited by 4 | Viewed by 2760
Abstract
Facial Beauty Prediction (FBP) is an important visual recognition problem to evaluate the attractiveness of faces according to human perception. Most existing FBP methods are based on supervised solutions using geometric or deep features. Semi-supervised learning for FBP is an almost unexplored research [...] Read more.
Facial Beauty Prediction (FBP) is an important visual recognition problem to evaluate the attractiveness of faces according to human perception. Most existing FBP methods are based on supervised solutions using geometric or deep features. Semi-supervised learning for FBP is an almost unexplored research area. In this work, we propose a graph-based semi-supervised method in which multiple graphs are constructed to find the appropriate graph representation of the face images (with and without scores). The proposed method combines both geometric and deep feature-based graphs to produce a high-level representation of face images instead of using a single face descriptor and also improves the discriminative ability of graph-based score propagation methods. In addition to the data graph, our proposed approach fuses an additional graph adaptively built on the predicted beauty values. Experimental results on the SCUTFBP-5500 facial beauty dataset demonstrate the superiority of the proposed algorithm compared to other state-of-the-art methods. Full article
(This article belongs to the Special Issue Advanced Graph Algorithms)
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17 pages, 4384 KiB  
Article
Should We Embed in Chemistry? A Comparison of Unsupervised Transfer Learning with PCA, UMAP, and VAE on Molecular Fingerprints
by Mario Lovrić, Tomislav Đuričić, Han T. N. Tran, Hussain Hussain, Emanuel Lacić, Morten A. Rasmussen and Roman Kern
Pharmaceuticals 2021, 14(8), 758; https://doi.org/10.3390/ph14080758 - 2 Aug 2021
Cited by 20 | Viewed by 7141
Abstract
Methods for dimensionality reduction are showing significant contributions to knowledge generation in high-dimensional modeling scenarios throughout many disciplines. By achieving a lower dimensional representation (also called embedding), fewer computing resources are needed in downstream machine learning tasks, thus leading to a faster training [...] Read more.
Methods for dimensionality reduction are showing significant contributions to knowledge generation in high-dimensional modeling scenarios throughout many disciplines. By achieving a lower dimensional representation (also called embedding), fewer computing resources are needed in downstream machine learning tasks, thus leading to a faster training time, lower complexity, and statistical flexibility. In this work, we investigate the utility of three prominent unsupervised embedding techniques (principal component analysis—PCA, uniform manifold approximation and projection—UMAP, and variational autoencoders—VAEs) for solving classification tasks in the domain of toxicology. To this end, we compare these embedding techniques against a set of molecular fingerprint-based models that do not utilize additional pre-preprocessing of features. Inspired by the success of transfer learning in several fields, we further study the performance of embedders when trained on an external dataset of chemical compounds. To gain a better understanding of their characteristics, we evaluate the embedders with different embedding dimensionalities, and with different sizes of the external dataset. Our findings show that the recently popularized UMAP approach can be utilized alongside known techniques such as PCA and VAE as a pre-compression technique in the toxicology domain. Nevertheless, the generative model of VAE shows an advantage in pre-compressing the data with respect to classification accuracy. Full article
(This article belongs to the Special Issue In Silico Approaches in Drug Design)
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16 pages, 2899 KiB  
Article
Multi Similarity Metric Fusion in Graph-Based Semi-Supervised Learning
by Saeedeh Bahrami, Alireza Bosaghzadeh and Fadi Dornaika
Computation 2019, 7(1), 15; https://doi.org/10.3390/computation7010015 - 7 Mar 2019
Cited by 12 | Viewed by 5076
Abstract
In semi-supervised label propagation (LP), the data manifold is approximated by a graph, which is considered as a similarity metric. Graph estimation is a crucial task, as it affects the further processes applied on the graph (e.g., LP, classification). As our knowledge of [...] Read more.
In semi-supervised label propagation (LP), the data manifold is approximated by a graph, which is considered as a similarity metric. Graph estimation is a crucial task, as it affects the further processes applied on the graph (e.g., LP, classification). As our knowledge of data is limited, a single approximation cannot easily find the appropriate graph, so in line with this, multiple graphs are constructed. Recently, multi-metric fusion techniques have been used to construct more accurate graphs which better represent the data manifold and, hence, improve the performance of LP. However, most of these algorithms disregard use of the information of label space in the LP process. In this article, we propose a new multi-metric graph-fusion method, based on the Flexible Manifold Embedding algorithm. Our proposed method represents a unified framework that merges two phases: graph fusion and LP. Based on one available view, different simple graphs were efficiently generated and used as input to our proposed fusion approach. Moreover, our method incorporated the label space information as a new form of graph, namely the Correlation Graph, with other similarity graphs. Furthermore, it updated the correlation graph to find a better representation of the data manifold. Our experimental results on four face datasets in face recognition demonstrated the superiority of the proposed method compared to other state-of-the-art algorithms. Full article
(This article belongs to the Section Computational Engineering)
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