Search Results (5)

Live-attenuated vaccines face a critical challenge in balancing immunogenicity with safety. To address this, we engineered programmable finite-replicated organisms (FROs) by depositing a limited number of indispensable components (such as noncanonical amino acids, ncAAs) within the cell, consuming the coenabling precise control of bacterial replication capability while preserving antigenic breadth. Two strategies were adopted to achieve the following purposes: (1) encoding ncAA in essential genes; (2) encoding ncAA in antitoxin of toxin–antitoxin (TA) systems. As noncanonical amino acids, 3,5-dichlorotyrosine (Cl2Y) was encoded by the amber codon (TAG) and inserted into the essential genes (e.g., serS, murG, and dnaA) or antitoxin genes. After optimizing expression and the number of amber codons in the storage genes, the FRO cells can grow up to six generations, achieving amplification approaching 100 times after depletion of the ncAA in the growth medium. The escape frequencies are 10⁻⁵ to 10⁻⁷, which need to be optimized by combining multiple storage genes in the same genome in the future. This work holds the potential to amplify the amounts of antigens for vaccines, potentially accelerating the development of next-generation vaccines against antibiotic-resistant threats. Full article

The goal of this study was to construct a mathematical and computational model that accurately represents the complex, flexible movements and mechanics of an elephant’s trunk. Rather than serving as a biological study, the elephant trunk model was used as an application to demonstrate the effectiveness of a proposed rigid–flexible coupling framework. This model has broader applications beyond understanding the mechanics of an elephant trunk, including its potential use in designing flexible robotic systems and prosthetics, as well as contributions to the fields of biomechanics and animal locomotion. An elephant’s trunk, a highly flexible and muscular organ without bones, is best modeled using continuum mechanics to capture the dynamic behavior of its motion. Given the rigid body nature of an elephant’s head movement and the highly flexible nature of the trunk, a robust geometric framework for the rigid–flexible interface is crucial to accurately capture the complex interactions, force transmission, and dynamic behavior arising from their distinct motion characteristics and differing coordinate representations. Under the umbrella of flexible multibody dynamics, this study introduced a hybrid coordinate system, integrating the Natural Coordinates Formulation (NCF) and the Absolute Nodal Coordinates Formulation (ANCF), to establish the geometric constraints governing the interaction between the rigid body (the head) and the highly flexible body (the trunk). Moreover, the model illustrates how forces and moments are transmitted between these components in both direct and inverse scenarios. Various finite elements were evaluated to identify suitable elements for modeling the elephant’s trunk. The model’s accuracy was validated through simulations of bending, twisting, compression, and other characteristic trunk movements. The solution method is presented alongside the simulation analysis for various motion scenarios, providing a comprehensive framework for understanding and replicating the trunk’s complex dynamics. Full article

This study introduces an organic light-emitting diode (OLED) light extraction method using a wavy-patterned polydimethylsiloxane (PDMS) substrate created via oxygen (O₂) plasma treatment. A rapid fabrication process adjusted the flow, pressure, duration, and power of the O₂ plasma treatment to replicate the desired wavy structure. This method allowed the treated samples to maintain over 90% total transmittance and enabled controlled haze adjustments from 10% to 70%. Finite-difference time-domain (FDTD) simulations were employed to determine optimal amplitudes and periods for the wavy structure to maximize optical performance. Further experiments demonstrated that bottom-emitting green fluorescent OLEDs constructed on these substrates achieved an external quantum efficiency (EQE) of 3.5%, representing a 97% improvement compared to planar PDMS OLEDs. Additionally, color purity variation was minimized to 0.044, and the peak wavelength shift was limited to 10 nm, ensuring consistent color purity and intensity even at wide viewing angles. This study demonstrates the potential of this cost-effective and efficient method in advancing high-quality display. Full article

Biochemical methylation reactions mediate the transfer of the methyl group regulating vital biochemical reactions implicated in various diseases as well as the methylation of DNA regulating the replication processes occurring in living organisms. As a finite number of methyl carriers are involved in the methyl transfer, their quantification could aid towards the assessment of an organism’s methylation potential. An Hydrophilic Interaction Chromatography-Liquid Chromatography Multiple Reaction Monitoring (HILIC-LC-MRM) mass spectrometry (MS) methodology was developed and validated according to Food & Drug Administration (FDA), European Medicines Agency (EMA), and International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH) for the simultaneous determination of nine metabolites i.e., B12, folic acid, 5-methyltetrahydrofolate, S-adenosylmethionine, S-adenosylhomocysteine, betaine, phosphocholine, N,N-dimethylglycine, and deoxythymidine monophosphate in human blood plasma. The sample pretreatment was based on a single step Solid-phase extraction (SPE) methodology using C18 cartridges. The methodology was found to accurately quantitate the analytes under investigation according to the corresponding dynamic range proposed in the literature for each analyte. The applicability of the method was assessed using blood donor samples and its applicability demonstrated by the assessment of their basal levels, which were shown to agree with the established basal levels. The methodology can be used for diagnostic purposes as well as for epigenetic screening. Full article

There is no alternative to phosphorus (P) in agriculture as it is second most important plant nutrient after nitrogen. Mineral P fertilizers are derived from rock phosphate (RP) which is finite, non-renewable and geographically restricted to a few countries, thus its shortage likely affects agriculture in near future as the world population is growing at a greater pace. This could increase P inputs in agriculture in order to meet rising food demands which may result in the depletion of RP reserves. Furthermore, P losses from farmlands in case of mineral P fertilizers also demands the sustainable use of P not only because of its finite resources but also the environmental concerns associated with P fertilization such as eutrophication. The present study was designed to formulate biochar-based P fertilizer that would help in the sustainable use of P fertilizer. Biochar(s) were prepared using wheat straw at 350–400 °C pyrolytic temperature followed by enrichment with Di-ammonium phosphate (DAP) taking into account all possible combination of DAP to biochar on the w/w basis (0:100, 25:75, 50:50, 75:25 and 100:0). Enrichment was carried out using two different methods i.e., phosphorus enriched biochar (PEB₁) by hot method and cold method (PEB₂). An incubation experiment was performed to assess the impact of each biochar on selected properties of soil. The treatments were organized in factorial arrangement under complete randomized design (CRD) with three replications. Both the amendments were applied at rate of 1% of dry soil on a w/w basis. A significant increase in soil extractable P and total nitrogen (N) was recorded for the ratio 50:50 as compared to control as well of rest of treatments. Similarly, high organic contents were found for both PEB₁ and PEB₂ at the ratio 50:50. An incubation experiment was followed by pot trial using 50:50 for both PEB₁ and PEB₂ and split doses of recommended P were applied (0%, 25%, 50% and 100%) with a control under CRD with three replications using chickpea as test crop. Both PEB₁ and PEB₂ with 50% P have significantly improved crop growth, yield, nodulation, and plant physiological and chemical parameters as compared to a recommended dose of P alone. The result may imply that the integration of P-enriched biochar and chemical fertilizer could be an effective approach to improve chickpea production and soil properties. Full article