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Keywords = exogenous/endogenous phenomena

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23 pages, 1667 KB  
Review
Benefits of Natural Antioxidants on Oral Health
by Giuseppina Malcangi, Assunta Patano, Anna Maria Ciocia, Anna Netti, Fabio Viapiano, Irene Palumbo, Irma Trilli, Mariafrancesca Guglielmo, Alessio Danilo Inchingolo, Gianna Dipalma, Francesco Inchingolo, Elio Minetti and Angelo Michele Inchingolo
Antioxidants 2023, 12(6), 1309; https://doi.org/10.3390/antiox12061309 - 20 Jun 2023
Cited by 43 | Viewed by 7198
Abstract
In recent years, special attention has been paid to the correlation between oxidation–reduction mechanisms and human health. The free radicals produced via physiological cellular biochemical processes are major contributors to oxidation phenomena. Their instability is the major cause of cellular damage. Free radical [...] Read more.
In recent years, special attention has been paid to the correlation between oxidation–reduction mechanisms and human health. The free radicals produced via physiological cellular biochemical processes are major contributors to oxidation phenomena. Their instability is the major cause of cellular damage. Free radical reactive oxygen species containing oxygen are the best-known ones. The body neutralises the harmful effects of free radicals via the production of endogenous antioxidants (superoxide dismutase, catalase, glutathione, and melatonin). The field of study of nutraucetics has found antioxidant capacity in substances such as vitamins A, B, C, E, coenzyme Q-10, selenium, flavonoids, lipoic acid, carotenoids, and lycopene contained in some foods. There are several areas of investigation that aim to research the interaction between reactive oxygen species, exogenous antioxidants, and the microbiota to promote increased protection via the peroxidation of macromolecules (proteins, and lipids) by maintaining a dynamic balance among the species that make up the microbiota. In this scoping review, we aim to map the scientific literature on oxidative stress related to the oral microbiota, and the use of natural antioxidants to counteract it, to assess the volume, nature, characteristics, and type of studies available to date, and to suggest the possible gaps that will emerge from the analysis. Full article
(This article belongs to the Special Issue The Role of Oxidative Stress and Antioxidant Systems in Oral Health)
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13 pages, 3805 KB  
Review
Alcohol, Inflammation, and Microbiota in Alcoholic Liver Disease
by Marija Dukić, Tijana Radonjić, Igor Jovanović, Marija Zdravković, Zoran Todorović, Nemanja Kraišnik, Bojana Aranđelović, Olga Mandić, Višeslav Popadić, Novica Nikolić, Slobodan Klašnja, Andrea Manojlović, Anica Divac, Jasna Gačić, Milica Brajković, Svetlana Oprić, Maja Popović and Marija Branković
Int. J. Mol. Sci. 2023, 24(4), 3735; https://doi.org/10.3390/ijms24043735 - 13 Feb 2023
Cited by 105 | Viewed by 8428
Abstract
Alcoholic liver disease (ALD) is a consequence of excessive alcohol use. According to many studies, alcohol represents a significant socioeconomic and health risk factor in today’s population. According to data from the World Health Organization, there are about 75 million people who have [...] Read more.
Alcoholic liver disease (ALD) is a consequence of excessive alcohol use. According to many studies, alcohol represents a significant socioeconomic and health risk factor in today’s population. According to data from the World Health Organization, there are about 75 million people who have alcohol disorders, and it is well known that its use leads to serious health problems. ALD is a multimodality spectrum that includes alcoholic fatty liver disease (AFL) and alcoholic steatohepatitis (ASH), consequently leading to liver fibrosis and cirrhosis. In addition, the rapid progression of alcoholic liver disease can lead to alcoholic hepatitis (AH). Alcohol metabolism produces toxic metabolites that lead to tissue and organ damage through an inflammatory cascade that includes numerous cytokines, chemokines, and reactive oxygen species (ROS). In the process of inflammation, mediators are cells of the immune system, but also resident cells of the liver, such as hepatocytes, hepatic stellate cells, and Kupffer cells. These cells are activated by exogenous and endogenous antigens, which are called pathogen and damage-associated molecular patterns (PAMPs, DAMPs). Both are recognized by Toll-like receptors (TLRs), which activation triggers the inflammatory pathways. It has been proven that intestinal dysbiosis and disturbed integrity of the intestinal barrier perform a role in the promotion of inflammatory liver damage. These phenomena are also found in chronic excessive use of alcohol. The intestinal microbiota has an important role in maintaining the homeostasis of the organism, and its role in the treatment of ALD has been widely investigated. Prebiotics, probiotics, postbiotics, and symbiotics represent therapeutic interventions that can have a significant effect on the prevention and treatment of ALD. Full article
(This article belongs to the Special Issue Alcohol and Inflammation)
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28 pages, 6381 KB  
Review
State of the Art in Carbon Nanomaterials for Photoacoustic Imaging
by Moon Sung Kang, Haeni Lee, Seung Jo Jeong, Tae Joong Eom, Jeesu Kim and Dong-Wook Han
Biomedicines 2022, 10(6), 1374; https://doi.org/10.3390/biomedicines10061374 - 10 Jun 2022
Cited by 32 | Viewed by 4903
Abstract
Photoacoustic imaging using energy conversion from light to ultrasound waves has been developed as a powerful tool to investigate in vivo phenomena due to their complex characteristics. In photoacoustic imaging, endogenous chromophores such as oxygenated hemoglobin, deoxygenated hemoglobin, melanin, and lipid provide useful [...] Read more.
Photoacoustic imaging using energy conversion from light to ultrasound waves has been developed as a powerful tool to investigate in vivo phenomena due to their complex characteristics. In photoacoustic imaging, endogenous chromophores such as oxygenated hemoglobin, deoxygenated hemoglobin, melanin, and lipid provide useful biomedical information at the molecular level. However, these intrinsic absorbers show strong absorbance only in visible or infrared optical windows and have limited light transmission, making them difficult to apply for clinical translation. Therefore, the development of novel exogenous contrast agents capable of increasing imaging depth while ensuring strong light absorption is required. We report here the application of carbon nanomaterials that exhibit unique physical, mechanical, and electrochemical properties as imaging probes in photoacoustic imaging. Classified into specific structures, carbon nanomaterials are synthesized with different substances according to the imaging purposes to modulate the absorption spectra and highly enhance photoacoustic signals. In addition, functional drugs can be loaded into the carbon nanomaterials composite, and effective in vivo monitoring and photothermal therapy can be performed with cell-specific targeting. Diverse applied cases suggest the high potential of carbon nanomaterial-based photoacoustic imaging in in vivo monitoring for clinical research. Full article
(This article belongs to the Section Biomedical Engineering and Materials)
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15 pages, 5543 KB  
Article
Tracking the Endogenous Dynamics of the Solfatara Volcano (Campi Flegrei, Italy) through the Analysis of Ground Thermal Image Temperatures
by Paola Cusano, Teresa Caputo, Enza De Lauro, Mariarosaria Falanga, Simona Petrosino, Fabio Sansivero and Giuseppe Vilardo
Atmosphere 2021, 12(8), 940; https://doi.org/10.3390/atmos12080940 - 22 Jul 2021
Cited by 15 | Viewed by 3356
Abstract
In the last decades, thermal infrared ground-based cameras have become effective tools to detect significant spatio-temporal anomalies in the hydrothermal/volcanic environment, possibly linked to impending eruptions. In this paper, we analyzed the temperature time-series recorded by the ground-based Thermal Infrared Radiometer permanent network [...] Read more.
In the last decades, thermal infrared ground-based cameras have become effective tools to detect significant spatio-temporal anomalies in the hydrothermal/volcanic environment, possibly linked to impending eruptions. In this paper, we analyzed the temperature time-series recorded by the ground-based Thermal Infrared Radiometer permanent network of INGV-OV, installed inside the Solfatara-Pisciarelli area, the most active fluid emission zones of the Campi Flegrei caldera (Italy). We investigated the temperatures’ behavior in the interval 25 June 2016–29 May 2020, with the aim of tracking possible endogenous hydrothermal/volcanic sources. We performed the Independent Component Analysis, the time evolution estimation of the spectral power, the cross-correlation and the Changing Points’ detection. We compared the obtained patterns with the behavior of atmospheric temperature and pressure, of the time-series recorded by the thermal camera of Mt. Vesuvius, of the local seismicity moment rate and of the CO2 emission flux. We found an overall influence of exogenous, large scale atmospheric effect, which dominated in 2016–2017. Starting from 2018, a clear endogenous forcing overcame the atmospheric factor, and dominated strongly soil temperature variations until the end of the observations. This paper highlights the importance of monitoring and investigating the soil temperature in volcanic environments, as well as the atmospheric parameters. Full article
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28 pages, 13193 KB  
Article
Can Machine Learning and PS-InSAR Reliably Stand in for Road Profilometric Surveys?
by Nicholas Fiorentini, Mehdi Maboudi, Pietro Leandri and Massimo Losa
Sensors 2021, 21(10), 3377; https://doi.org/10.3390/s21103377 - 12 May 2021
Cited by 17 | Viewed by 4765
Abstract
This paper proposes a methodology for correlating products derived by Synthetic Aperture Radar (SAR) measurements and laser profilometric road roughness surveys. The procedure stems from two previous studies, in which several Machine Learning Algorithms (MLAs) have been calibrated for predicting the average vertical [...] Read more.
This paper proposes a methodology for correlating products derived by Synthetic Aperture Radar (SAR) measurements and laser profilometric road roughness surveys. The procedure stems from two previous studies, in which several Machine Learning Algorithms (MLAs) have been calibrated for predicting the average vertical displacement (in terms of mm/year) of road pavements as a result of exogenous phenomena occurrence, such as subsidence. Such algorithms are based on surveys performed with Persistent Scatterer Interferometric SAR (PS-InSAR) over an area of 964 km2 in the Tuscany Region, Central Italy. Starting from this basis, in this paper, we propose to integrate the information provided by these MLAs with 10 km of in situ profilometric measurements of the pavement surface roughness and relative calculation of the International Roughness Index (IRI). Accordingly, the aim is to appreciate whether and to what extent there is an association between displacements estimated by MLAs and IRI values. If a dependence exists, we may argue that road regularity is driven by exogenous phenomena and MLAs allow for the replacement of in situ surveys, saving considerable time and money. In this research framework, results reveal that there are several road sections that manifest a clear association among these two methods, while others denote that the relationship is weaker, and in situ activities cannot be bypassed to evaluate the real pavement conditions. We could wrap up that, in these stretches, the road regularity is driven by endogenous factors which MLAs did not integrate during their training. Once additional MLAs conditioned by endogenous factors have been developed (such as traffic flow, the structure of the pavement layers, and material characteristics), practitioners should be able to estimate the quality of pavement over extensive and complex road networks quickly, automatically, and with relatively low costs. Full article
(This article belongs to the Special Issue Sensing Advancement and Health Monitoring of Transport Structures)
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8 pages, 758 KB  
Commentary
Exogenous RNA as a Regulatory Signal during a Plant’s Interaction with the Biotic Environment: An Evolutionary Perspective and Future Applications in Agriculture
by Sergey Ivashuta, Alberto Iandolino and Greg Watson
Plants 2021, 10(3), 532; https://doi.org/10.3390/plants10030532 - 12 Mar 2021
Viewed by 2533
Abstract
Environmental RNAi (eRNAi) is a sequence-specific regulation of endogenous gene expression in a responsive organism by exogenous RNA. While exogenous RNA transfer between organisms of different kingdoms of life have been unambiguously identified in nature, our understanding of the biological significance of this [...] Read more.
Environmental RNAi (eRNAi) is a sequence-specific regulation of endogenous gene expression in a responsive organism by exogenous RNA. While exogenous RNA transfer between organisms of different kingdoms of life have been unambiguously identified in nature, our understanding of the biological significance of this phenomenon remains obscure, particularly within an evolutionary context. During the last decade multiple reports utilizing various mechanisms of natural eRNAi phenomena have been attempted to develop new agricultural traits and products including weed, disease and insect control. Although these attempts yielded mixed results, this concept remains extremely attractive for many agricultural applications. To better utilize eRNAi for practical applications, we would like to emphasize the necessity of understanding the biological significance of this phenomenon within an evolutionary context and learn from nature by developing advanced tools to identify and study new cases of exogeneous RNA transfer and eRNAi. In this opinion article we would like to look at the exogeneous RNA transfer from an evolutionary perspective, propose that new cases of exogeneous RNA transfer still remain to be identified in nature, and address a knowledge gap in understanding the biological function and significance of RNA transfer. We believe such approach may eventually result in a more successful use of this phenomenon for practical applications in agriculture. Full article
(This article belongs to the Special Issue External RNA Application for Gene Regulation and Plant Resistance)
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15 pages, 6277 KB  
Article
A Cellular Automata Model for Integrated Simulation of Land Use and Transport Interactions
by Nuno Pinto, António P. Antunes and Josep Roca
ISPRS Int. J. Geo-Inf. 2021, 10(3), 149; https://doi.org/10.3390/ijgi10030149 - 8 Mar 2021
Cited by 11 | Viewed by 4995
Abstract
Cellular automata (CA) models have been used in urban studies for dealing with land use change. Transport and accessibility are arguably the main drivers of urban change and have a direct influence on land use. Land use and transport interaction models deal with [...] Read more.
Cellular automata (CA) models have been used in urban studies for dealing with land use change. Transport and accessibility are arguably the main drivers of urban change and have a direct influence on land use. Land use and transport interaction models deal with the complexity of this relationship using many different approaches. CA models incorporate these drivers, but usually consider transport (and accessibility) variables as exogenous. Our paper presents a CA model where transport variables are endogenous to the model and are calibrated along with the land use variables to capture the interdependent complexity of these phenomena. The model uses irregular cells and a variable neighborhood to simulate land use change, taking into account the effect of the road network. Calibration is performed through a particle swarm algorithm. We present an application of the model to a comparison of scenarios for the construction of a ring road in the city of Coimbra, Portugal. The results show the ability of the CA model to capture the influence of change of the transport network (and thus in accessibility) in the land use dynamics. Full article
(This article belongs to the Special Issue Measuring, Mapping, Modeling, and Visualization of Cities)
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17 pages, 2311 KB  
Article
Establishment of a New Device for Electrical Stimulation of Non-Degenerative Cartilage Cells In Vitro
by Simone Krueger, Alexander Riess, Anika Jonitz-Heincke, Alina Weizel, Anika Seyfarth, Hermann Seitz and Rainer Bader
Int. J. Mol. Sci. 2021, 22(1), 394; https://doi.org/10.3390/ijms22010394 - 1 Jan 2021
Cited by 13 | Viewed by 4848
Abstract
In cell-based therapies for cartilage lesions, the main problem is still the formation of fibrous cartilage, caused by underlying de-differentiation processes ex vivo. Biophysical stimulation is a promising approach to optimize cell-based procedures and to adapt them more closely to physiological conditions. The [...] Read more.
In cell-based therapies for cartilage lesions, the main problem is still the formation of fibrous cartilage, caused by underlying de-differentiation processes ex vivo. Biophysical stimulation is a promising approach to optimize cell-based procedures and to adapt them more closely to physiological conditions. The occurrence of mechano-electrical transduction phenomena within cartilage tissue is physiological and based on streaming and diffusion potentials. The application of exogenous electric fields can be used to mimic endogenous fields and, thus, support the differentiation of chondrocytes in vitro. For this purpose, we have developed a new device for electrical stimulation of chondrocytes, which operates on the basis of capacitive coupling of alternating electric fields. The reusable and sterilizable stimulation device allows the simultaneous use of 12 cavities with independently applicable fields using only one main supply. The first parameter settings for the stimulation of human non-degenerative chondrocytes, seeded on collagen type I elastin-based scaffolds, were derived from numerical electric field simulations. Our first results suggest that applied alternating electric fields induce chondrogenic re-differentiation at the gene and especially at the protein level of human de-differentiated chondrocytes in a frequency-dependent manner. In future studies, further parameter optimizations will be performed to improve the differentiation capacity of human cartilage cells. Full article
(This article belongs to the Special Issue Cell Therapy Approaches for Bone and Cartilage Regeneration)
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19 pages, 12084 KB  
Review
O6-alkylguanine-DNA Alkyltransferases in Microbes Living on the Edge: From Stability to Applicability
by Rosanna Mattossovich, Rosa Merlo, Riccardo Miggiano, Anna Valenti and Giuseppe Perugino
Int. J. Mol. Sci. 2020, 21(8), 2878; https://doi.org/10.3390/ijms21082878 - 20 Apr 2020
Cited by 12 | Viewed by 4867
Abstract
The genome of living cells is continuously exposed to endogenous and exogenous attacks, and this is particularly amplified at high temperatures. Alkylating agents cause DNA damage, leading to mutations and cell death; for this reason, they also play a central role in chemotherapy [...] Read more.
The genome of living cells is continuously exposed to endogenous and exogenous attacks, and this is particularly amplified at high temperatures. Alkylating agents cause DNA damage, leading to mutations and cell death; for this reason, they also play a central role in chemotherapy treatments. A class of enzymes known as AGTs (alkylguanine-DNA-alkyltransferases) protects the DNA from mutations caused by alkylating agents, in particular in the recognition and repair of alkylated guanines in O6-position. The peculiar irreversible self-alkylation reaction of these enzymes triggered numerous studies, especially on the human homologue, in order to identify effective inhibitors in the fight against cancer. In modern biotechnology, engineered variants of AGTs are developed to be used as protein tags for the attachment of chemical ligands. In the last decade, research on AGTs from (hyper)thermophilic sources proved useful as a model system to clarify numerous phenomena, also common for mesophilic enzymes. This review traces recent progress in this class of thermozymes, emphasizing their usefulness in basic research and their consequent advantages for in vivo and in vitro biotechnological applications. Full article
(This article belongs to the Special Issue Thermophilic and Hyperthermophilic Microbes and Enzymes)
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44 pages, 1223 KB  
Review
The Initial Common Pathway of Inflammation, Disease, and Sudden Death
by Robert M. Davidson and Stephanie Seneff
Entropy 2012, 14(8), 1399-1442; https://doi.org/10.3390/e14081399 - 2 Aug 2012
Cited by 17 | Viewed by 23627
Abstract
In reviewing the literature pertaining to interfacial water, colloidal stability, and cell membrane function, we are led to propose that a cascade of events that begins with acute exogenous surfactant-induced interfacial water stress can explain the etiology of sudden death syndrome (SDS), as [...] Read more.
In reviewing the literature pertaining to interfacial water, colloidal stability, and cell membrane function, we are led to propose that a cascade of events that begins with acute exogenous surfactant-induced interfacial water stress can explain the etiology of sudden death syndrome (SDS), as well as many other diseases associated with modern times. A systemic lowering of serum zeta potential mediated by exogenous cationic surfactant administration is the common underlying pathophysiology. The cascade leads to subsequent inflammation, serum sickness, thrombohemorrhagic phenomena, colloidal instability, and ultimately even death. We propose that a sufficient precondition for sudden death is lowered bioavailability of certain endogenous sterol sulfates, sulfated glycolipids, and sulfated glycosaminoglycans, which are essential in maintaining biological equipose, energy metabolism, membrane function, and thermodynamic stability in living organisms. Our literature review provides the basis for the presentation of a novel hypothesis as to the origin of endogenous bio-sulfates which involves energy transduction from sunlight. Our hypothesis is amply supported by a growing body of data showing that parenteral administration of substances that lower serum zeta potential results in kosmotropic cationic and/or chaotropic anionic interfacial water stress, and the resulting cascade. Full article
(This article belongs to the Special Issue Biosemiotic Entropy: Disorder, Disease, and Mortality)
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