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Keywords = chronoculture

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42 pages, 2055 KB  
Review
Time to Eat Your Vegetables: The Role of Circadian Clocks in Insect Herbivory
by Lena Smith, Connor J. Tyler, Shubhangi Mahajan, Haruko Okamoto and Herman Wijnen
Insects 2026, 17(2), 139; https://doi.org/10.3390/insects17020139 - 26 Jan 2026
Viewed by 427
Abstract
Insects exhibit a range of ecological relationships with plants, including pollination, seed dispersal, parasitism, predation, and herbivory. Interactions between insects and plants are shaped by internal daily timekeeping systems in both sets of organisms termed circadian clocks. This review describes the impact of [...] Read more.
Insects exhibit a range of ecological relationships with plants, including pollination, seed dispersal, parasitism, predation, and herbivory. Interactions between insects and plants are shaped by internal daily timekeeping systems in both sets of organisms termed circadian clocks. This review describes the impact of the circadian clocks of insects and plants on herbivory, which is highly relevant not only to natural ecosystems, but also to agriculture and forest management. Following an introduction to the circadian clocks of plants and insects, we discuss the circadian organization of relevant aspects of plant metabolism and defense. Next, we describe how insect clocks govern herbivory-associated physiology and behavior before exploring how rhythmic processes in plants and insects interact to temporally control herbivory. Finally, we describe how insights from the clock control of herbivory may inform pest management strategies and what future research in this area may contribute. Full article
(This article belongs to the Collection Plant Responses to Insect Herbivores)
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22 pages, 5178 KB  
Review
Application of Chronobiology in Plant Agriculture
by Maria Stolarz
Appl. Sci. 2025, 15(17), 9614; https://doi.org/10.3390/app15179614 - 31 Aug 2025
Cited by 1 | Viewed by 1012
Abstract
Plants grow, develop, and reproduce within a rhythmic environment. Environmental cues—such as light, temperature, nutrition, water—initiate, sustain, or terminate basic physiological processes within the plant, such as photosynthesis, respiration, nutrient uptake, water management, transpiration, growth, and hormone regulation. Simultaneously, inside the plant, internal [...] Read more.
Plants grow, develop, and reproduce within a rhythmic environment. Environmental cues—such as light, temperature, nutrition, water—initiate, sustain, or terminate basic physiological processes within the plant, such as photosynthesis, respiration, nutrient uptake, water management, transpiration, growth, and hormone regulation. Simultaneously, inside the plant, internal “living clocks” are ticking and helping plants to synchronize internal processes with environmental cues and defend themselves against stressful conditions. These clock-regulated processes underlie a variety of plant traits, such as germination capability, growth and development rate, time of flowering, fruiting and yielding, development of plant shape, and size and biomass production. Most of these physiological traits are important attributes of crop plants. In recent years, the growing understanding of environmental rhythms as environmental cues and the mechanisms underlying plant internal clocks has begun to play an increasingly important role in agricultural practices. This is an emerging area of research that integrates insights from chronobiology with practices in plant agriculture. In this review, this new research area is studied and mapped using Scopus, Web of Science, Google Scholar, Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA protocol), and VOSviewer1.6.20 software. The analyses were carried out on 18 July–27 August 2025. For the VOSviewer author keywords co-occurrence analysis, all 1022 documents covering the time range of the last 7.5–2.5 years (2018–July 2025) were included and three maps were generated. Additionally, 59 review documents covering the last 27 years (1988–July 2025) were extracted by relevance using Google Scholar. In this review, recent advances and topics in plant chronobiology were examined. The issue of how these advances respond to key challenges in plant agriculture was explored. The bidirectional influence between chronobiology and practices in plant agriculture were also considered. Full article
(This article belongs to the Section Agricultural Science and Technology)
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24 pages, 3121 KB  
Article
How Mitochondrial DNA Can Write Pre-History: Kinship and Culture in Duero Basin (Spain) during Chalcolithic and Bronze Age
by Sara Palomo-Díez, Ángel Esparza-Arroyo, Olga Rickards, Cristina Martínez-Labarga and Eduardo Arroyo-Pardo
Genealogy 2023, 7(3), 51; https://doi.org/10.3390/genealogy7030051 - 27 Jul 2023
Cited by 2 | Viewed by 6651
Abstract
The chronological period from the beginning of the Chalcolithic Age to the end of the Bronze Age on the Iberian northern sub-plateau of the Iberic Peninsula involves interesting social and cultural phenomena, such as the appearance of the Bell Beaker and, later, the [...] Read more.
The chronological period from the beginning of the Chalcolithic Age to the end of the Bronze Age on the Iberian northern sub-plateau of the Iberic Peninsula involves interesting social and cultural phenomena, such as the appearance of the Bell Beaker and, later, the Cogotas I cultures. This work constructs a genetic characterisation of the maternal lineages of the human population that lived on the northern sub-plateau between 5000 and 3000 years ago through an analysis of mitochondrial DNA (mtDNA), a kind of genetic marker that is inherited through maternal lineages, unaltered from generation to generation. Population and cultural questions are investigated through mtDNA analyses. This study intends to shed light on the following questions. Were individuals who were buried together in multiple or collective burials biologically related through their maternal lineages? Were there distinct maternal human lineages in the same or different geographical areas if different material cultures (Bell Beaker and Cogotas I) were associated with the arrival of new human populations who established close biological relationships with the endogenous populations? Or could this be the result of the transmission of knowledge without human populations mixing? Another important question is whether the material cultures were related to the female populations. We analysed 91 individuals from 28 different archaeological sites of the Iberian northern sub-plateau from four different chrono-cultural periods (Pre-Bell Beaker, Bell Beaker, Proto-Cogotas I, and Cogotas I), from the end of the Chalcolithic Age up to the Bronze Age. There were two historical moments of new populations arriving: the first during the Pre-Bell Beaker period, associated with the K mtDNA haplogroup, and the second during the Proto-Cogotas I culture, with new lineages of the H, HVO, and T haplogroups. Neither of these new population flows were directly associated with the maximum development of the two main material cultures Bell Beaker and Cogotas I, so they must have occurred immediately beforehand, during the Pre-Bell Beaker and Proto-Cogotas I periods, respectively. However, we cannot discard an association between the populations and material cultures. Curiously, it has also been observed that there was also a tendency towards multiple burials, in which the individuals who were buried together belonged to the same maternal lineage, during these two periods of population change. This study has shed some light on the populational changes that occurred through these different periods in this specific geographical area of the northern sub-plateau of the Iberian Peninsula. Full article
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26 pages, 7561 KB  
Article
Submergence Stress Alters the Expression of Clock Genes and Configures New Zeniths and Expression of Outputs in Brachypodium distachyon
by Lucisabel Medina-Chávez, Christian Camacho, Jorge Arturo Martínez-Rodríguez, Blanca Estela Barrera-Figueroa, Dawn H. Nagel, Piyada Juntawong and Julián Mario Peña-Castro
Int. J. Mol. Sci. 2023, 24(10), 8555; https://doi.org/10.3390/ijms24108555 - 10 May 2023
Cited by 2 | Viewed by 3797
Abstract
Plant networks of oscillating genes coordinate internal processes with external cues, contributing to increased fitness. We hypothesized that the response to submergence stress may dynamically change during different times of the day. In this work, we determined the transcriptome (RNA sequencing) of the [...] Read more.
Plant networks of oscillating genes coordinate internal processes with external cues, contributing to increased fitness. We hypothesized that the response to submergence stress may dynamically change during different times of the day. In this work, we determined the transcriptome (RNA sequencing) of the model monocotyledonous plant, Brachypodium distachyon, during a day of submergence stress, low light, and normal growth. Two ecotypes of differential tolerance, Bd21 (sensitive) and Bd21-3 (tolerant), were included. We submerged 15-day-old plants under a long-day diurnal cycle (16 h light/8 h dark) and collected samples after 8 h of submergence at ZT0 (dawn), ZT8 (midday), ZT16 (dusk), ZT20 (midnight), and ZT24 (dawn). Rhythmic processes were enriched both with up- and down-regulated genes, and clustering highlighted that the morning and daytime oscillator components (PRRs) show peak expression in the night, and a decrease in the amplitude of the clock genes (GI, LHY, RVE) was observed. Outputs included photosynthesis-related genes losing their known rhythmic expression. Up-regulated genes included oscillating suppressors of growth, hormone-related genes with new late zeniths (e.g., JAZ1, ZEP), and mitochondrial and carbohydrate signaling genes with shifted zeniths. The results highlighted genes up-regulated in the tolerant ecotype such as METALLOTHIONEIN3 and ATPase INHIBITOR FACTOR. Finally, we show by luciferase assays that Arabidopsis thaliana clock genes are also altered by submergence changing their amplitude and phase. This study can guide the research of chronocultural strategies and diurnal-associated tolerance mechanisms. Full article
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28 pages, 11995 KB  
Article
Investigating the Influence of Different DEMs on GIS-Based Cost Distance Modeling for Site Catchment Analysis of Prehistoric Sites in Andalusia
by Daniel Becker, María De Andrés-Herrero, Christian Willmes, Gerd-Christian Weniger and Georg Bareth
ISPRS Int. J. Geo-Inf. 2017, 6(2), 36; https://doi.org/10.3390/ijgi6020036 - 26 Jan 2017
Cited by 41 | Viewed by 14370
Abstract
The overall objective of this work is to apply GIS-based cost distance modeling (CDM) to site catchment modeling and analysis of prehistoric (Solutrean) sites in Andalusia. The implementation of a GIS-method for slope-based CDM was explained in detail, so that it can be [...] Read more.
The overall objective of this work is to apply GIS-based cost distance modeling (CDM) to site catchment modeling and analysis of prehistoric (Solutrean) sites in Andalusia. The implementation of a GIS-method for slope-based CDM was explained in detail, so that it can be replicated easily in future studies. Additional cost components, vegetation and stream networks, were included in the method. The presented CDM approach uses slope rasters as input data, which were derived from digital elevation models (DEMs). Various DEMs that differ in cell size, accuracy and other characteristics can be applied to this method. Thus, a major goal of this work is to investigate the influence different publicly available DEMs (SRTM, ASTER GDEM, EU-DEM, official 5-m/10-m cell size DEMs) have on the results of GIS-based CDM. While the investigation was conducted on sites from different chronocultural periods, a case study was performed on Solutrean sites in order to test the CDM approach by producing actual results and then comparing and interpreting them from an archaeological perspective. The results of the DEM evaluation with resampled horizontal resolutions show a clear influence of the DEM cell size on the modeled catchment area sizes. The investigation also indicates that this influence can be superimposed by other factors, such as noise and residuals of filtered anthropogenic features, when using DEMs of different origins. Full article
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