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Keywords = alkylhydrazide

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35 pages, 7644 KiB  
Review
Drug Discovery for Histone Deacetylase Inhibition: Past, Present and Future of Zinc-Binding Groups
by Gustavo Salgado Pires, Heber Victor Tolomeu, Daniel Alencar Rodrigues, Lídia Moreira Lima, Carlos Alberto Manssour Fraga and Pedro de Sena Murteira Pinheiro
Pharmaceuticals 2025, 18(4), 577; https://doi.org/10.3390/ph18040577 - 16 Apr 2025
Cited by 2 | Viewed by 2114
Abstract
Histone deacetylases (HDACs) are key regulators of gene expression, influencing chromatin remodeling and playing a crucial role in various physiological and pathological processes. Aberrant HDAC activity has been linked to cancer, neurodegenerative disorders, and inflammatory diseases, making these enzymes attractive therapeutic targets. HDAC [...] Read more.
Histone deacetylases (HDACs) are key regulators of gene expression, influencing chromatin remodeling and playing a crucial role in various physiological and pathological processes. Aberrant HDAC activity has been linked to cancer, neurodegenerative disorders, and inflammatory diseases, making these enzymes attractive therapeutic targets. HDAC inhibitors (HDACis) have gained significant attention, particularly those containing zinc-binding groups (ZBGs), which interact directly with the catalytic zinc ion in the enzyme’s active site. The structural diversity of ZBGs profoundly impacts the potency, selectivity, and pharmacokinetics of HDACis. While hydroxamic acids remain the most widely used ZBGs, their limitations, such as metabolic instability and off-target effects, have driven the development of alternative scaffolds, including ortho-aminoanilides, mercaptoacetamides, alkylhydrazides, oxadiazoles, and more. This review explores the structural and mechanistic aspects of different ZBGs, their interactions with HDAC isoforms, and their influence on inhibitor selectivity. Advances in structure-based drug design have allowed the fine-tuning of HDACi pharmacophores, leading to more selective and efficacious compounds with improved drug-like properties. Understanding the nuances of ZBG interactions is essential for the rational design of next-generation HDACis, with potential applications in oncology, neuroprotection, and immunotherapy. Full article
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15 pages, 4924 KiB  
Article
Development of Low-Molecular-Weight Gelator/Polymer Composite Materials Utilizing the Gelation and Swelling Process of Polymeric Materials
by Yutaka Ohsedo and Chinatsu Takagi
Gels 2024, 10(5), 298; https://doi.org/10.3390/gels10050298 - 26 Apr 2024
Viewed by 1995
Abstract
The creation of polymer composite materials by compositing fillers into polymer materials is an effective method of improving the properties of polymer materials, and the development of new fillers and their novel composite methods is expected to lead to the creation of new [...] Read more.
The creation of polymer composite materials by compositing fillers into polymer materials is an effective method of improving the properties of polymer materials, and the development of new fillers and their novel composite methods is expected to lead to the creation of new polymer composite materials. In this study, we develop a new filler material made of low-molecular-weight gelators by applying a gelation process that simultaneously performs the swelling (gelation) of crosslinked polymer materials and the self-assembly of low-molecular-weight gelators into low-dimensional crystals in organic solvents within polymer materials. The gelation process of crosslinking rubber-based polymers using alkylhydrazides/toluene as the low-molecular-weight gelator allowed us to composite self-assembled sheet-like crystals of alkylhydrazides as fillers in polymeric materials, as suggested by various microscopic observations, including infrared absorption measurements, small-angle X-ray diffraction measurements and thermal analysis, microscopy, and infrared absorption measurements. Furthermore, tensile tests of the composite materials demonstrated that the presence of fillers improved both the Young’s modulus and the tensile strength, as well as the elongation at yield. Additionally, heat treatment was shown to facilitate filler dispersion and enhance the mechanical properties. The findings demonstrate the potential of self-assembled sheet-like crystals of low-molecular-weight gelators as novel filler materials for polymers. The study’s composite method utilizing gelators via gelation proved effective. Full article
(This article belongs to the Section Gel Processing and Engineering)
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24 pages, 3772 KiB  
Article
Application of Ligand- and Structure-Based Prediction Models for the Design of Alkylhydrazide-Based HDAC3 Inhibitors as Novel Anti-Cancer Compounds
by Emre F. Bülbül, Dina Robaa, Ping Sun, Fereshteh Mahmoudi, Jelena Melesina, Matthes Zessin, Mike Schutkowski and Wolfgang Sippl
Pharmaceuticals 2023, 16(7), 968; https://doi.org/10.3390/ph16070968 - 6 Jul 2023
Cited by 6 | Viewed by 2773
Abstract
Histone deacetylases (HDAC) represent promising epigenetic targets for several diseases including different cancer types. The HDAC inhibitors approved to date are pan-HDAC inhibitors and most show a poor selectivity profile, side effects, and in particular hydroxamic-acid-based inhibitors lack good pharmacokinetic profiles. Therefore, the [...] Read more.
Histone deacetylases (HDAC) represent promising epigenetic targets for several diseases including different cancer types. The HDAC inhibitors approved to date are pan-HDAC inhibitors and most show a poor selectivity profile, side effects, and in particular hydroxamic-acid-based inhibitors lack good pharmacokinetic profiles. Therefore, the development of isoform-selective non-hydroxamic acid HDAC inhibitors is a highly regarded field in medicinal chemistry. In this study, we analyzed different ligand-based and structure-based drug design techniques to predict the binding mode and inhibitory activity of recently developed alkylhydrazide HDAC inhibitors. Alkylhydrazides have recently attracted more attention as they have shown promising effects in various cancer cell lines. In this work, pharmacophore models and atom-based quantitative structure–activity relationship (QSAR) models were generated and evaluated. The binding mode of the studied compounds was determined using molecular docking as well as molecular dynamics simulations and compared with known crystal structures. Calculated free energies of binding were also considered to generate QSAR models. The created models show a good explanation of in vitro data and were used to develop novel HDAC3 inhibitors. Full article
(This article belongs to the Special Issue Computational Methods in the Design of Anticancer Drugs)
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11 pages, 1192 KiB  
Review
Low-Molecular-Weight Gelators as Base Materials for Ointments
by Yutaka Ohsedo
Gels 2016, 2(2), 13; https://doi.org/10.3390/gels2020013 - 1 Apr 2016
Cited by 30 | Viewed by 7896
Abstract
Ointments have been widely used as an efficient means of transdermal drug application for centuries. In order to create ointments suitable for various new medicinal drugs, the creation of ointment base materials, such as gels, has attracted much research attention in this decade. [...] Read more.
Ointments have been widely used as an efficient means of transdermal drug application for centuries. In order to create ointments suitable for various new medicinal drugs, the creation of ointment base materials, such as gels, has attracted much research attention in this decade. On the other hand, the chemical tuning of low-molecular-weight gelators (LMWGs) has been increasingly studied for two decades because LMWGs can be tailored for different purposes by molecular design and modification. In this review, several series of studies related to the creation of ointment base materials with enhanced properties using existing and newly-created LMWGs are summarized. Full article
(This article belongs to the Special Issue Organogels for Biomedical Applications)
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