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Keywords = agostic interaction

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19 pages, 6021 KiB  
Article
Electron Density and Molecular Orbital Analyses of the Nature of Bonding in the η3-CCH Agostic Rhodium Complexes Preceding the C–C and C–H Bond Cleavages
by Irena Efremenko
Molecules 2024, 29(20), 4788; https://doi.org/10.3390/molecules29204788 - 10 Oct 2024
Cited by 1 | Viewed by 1626
Abstract
In our recent work, we revisited C–H and C–C bond activation in rhodium (I) complexes of pincer ligands PCP, PCN, PCO, POCOP, and SCS. Our findings indicated that an η3-Csp2Csp3H agostic intermediate acts as a common precursor [...] Read more.
In our recent work, we revisited C–H and C–C bond activation in rhodium (I) complexes of pincer ligands PCP, PCN, PCO, POCOP, and SCS. Our findings indicated that an η3-Csp2Csp3H agostic intermediate acts as a common precursor to both C–C and C–H bond activation in these systems. We explore the electronic structure and bonding nature of these precleavage complexes using electron density and molecular orbital analyses. Using NBO, IBO, and ESI-3D methods, the bonding in the η3-CCH agostic moiety is depicted by two three-center agostic bonds: Rh–Csp2–Csp3 and Rh–Csp3–H, with all three atoms datively bound to Rh(I). IBO analysis specifically highlights the involvement of three orbitals (CC→Rh and CH→Rh σ donation, plus Rh→CCH π backdonation) in both C–C and C–H bond cleavages. NCIPLOT and QTAIM analyses highlight anagostic (Rh–H) or β-agostic (Rh–Csp2–H) interactions and the absence of Rh–Csp3 interactions. QTAIM molecular graphs suggest bond path instability under dynamic conditions due to the nearness of line and ring critical points. Several low-frequency and low-force vibrational modes interconvert various bonding patterns, reinforcing the dynamic η3-CCH agostic nature. The kinetic preference for C–H bond breaking is attributed to the smaller reduced mass of C–H vibrations compared to C–C vibrations. Full article
(This article belongs to the Special Issue Exclusive Feature Papers on Molecular Structure)
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13 pages, 3302 KiB  
Article
Unveiling the Unusual Mn(CO)3 Migration in a Manganese Cyclohexenyl Complex by DFT Computations
by Guangchao Liang and Min Zhang
Molecules 2024, 29(12), 2945; https://doi.org/10.3390/molecules29122945 - 20 Jun 2024
Viewed by 1173
Abstract
Homogeneous catalysis involving a transition metal agostic interaction (TMHC) is an attractive strategy for C–H bond activation, in which the transition metal agostic intermediates serve as the critical component. To investigate the roles of manganese agostic intermediates in the [...] Read more.
Homogeneous catalysis involving a transition metal agostic interaction (TMHC) is an attractive strategy for C–H bond activation, in which the transition metal agostic intermediates serve as the critical component. To investigate the roles of manganese agostic intermediates in the unusual migration of the Mn(CO)3 fragment in the (exo-phenyl)(η3-cyclohexenyl)manganese tricarbonyl [(Ph)(η3-C6H8)Mn(CO)3] (complex 1) under the protonation of tetrafluoroboric acid–diethyl ether (HBF4.Et2O), a comprehensive density functional theory (DFT) theoretical study was performed. The computational results showed that formation of the [(cyclohex-3-enyl)-η6-benzene]manganese tricarbonyl complex [(C6H9)(η6-Ph)Mn(CO)3+][BF4] (complex 2) was achieved via a series of mono-agostic and di-agostic intermediates. The overall rate-limiting step for this unusual migration of the Mn(CO)3 fragment is the formation of the di-agostic (η2-phenyl)manganese complex 8 (458) with a Gibbs barrier of 15.4 kcal mol−1. The agostic intermediates with TMHC agostic interactions were well-characterized by geometry parameters, Atoms-In-Molecules (AIM) analyses, and the Natural Adaptive Orbitals (NAdOs). The located pathways in the current study successfully explained the experimental observations, and the findings on the TMHC agostic interaction provided a new aspect of the catalytic reaction with the manganese complex. Full article
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11 pages, 2278 KiB  
Article
Insights into the Fluxional Processes of Monomethylcyclohexenyl Manganese Tricarbonyl
by Guangchao Liang and Min Zhang
Molecules 2023, 28(7), 3232; https://doi.org/10.3390/molecules28073232 - 4 Apr 2023
Cited by 2 | Viewed by 1668
Abstract
Multiple fluxional processes of 6-monomethylcyclohexenylmanganese tricarbonyl [(6-MeC6H8)Mn(CO)3, complex 1] and 5-monomethylcyclohexenylmanganese tricarbonyl [(5-MeC6H8)Mn(CO)3, complex 2] have been explored using density functional theory (DFT) computations. The contributions of four agostomers— [...] Read more.
Multiple fluxional processes of 6-monomethylcyclohexenylmanganese tricarbonyl [(6-MeC6H8)Mn(CO)3, complex 1] and 5-monomethylcyclohexenylmanganese tricarbonyl [(5-MeC6H8)Mn(CO)3, complex 2] have been explored using density functional theory (DFT) computations. The contributions of four agostomers—1, 2, 3, and 4—to the (MeC6H8)Mn(CO)3 exchange processes were revealed. The computational results demonstrated that the 1, 2-agostic isomerization only occurred via the η4-diene hydride transition state (TS-1-2, 14.0 kcal/mol), which is consistent with the experimentally proposed high-energy exchange process (16.0 kcal/mol). Excellent agreement is observed (R2 = 0.9862) when comparing the computed and experimentally observed variable temperature 1H NMR chemical shifts. With these results, important insights into the role of agostic interaction in the homogeneous catalysis process could be made, especially with regard to transition metal catalyzed C-H activation. Full article
(This article belongs to the Special Issue Inorganic Young Investigators' Contributions Collection)
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17 pages, 6585 KiB  
Article
Effects of Site Geometry and Local Composition on Hydrogenation of Surface Carbon to Methane on Ni, Co, and NiCo Catalysts
by Sebastian Godoy, Prashant Deshlahra, Francisco Villagra-Soza, Alejandro Karelovic and Romel Jimenez
Catalysts 2022, 12(11), 1380; https://doi.org/10.3390/catal12111380 - 7 Nov 2022
Cited by 6 | Viewed by 2256
Abstract
Surface carbon deposits deactivate Ni and Co catalysts in reactions involving hydrocarbons and COx. Electronic properties, adsorption energies of H, C, and CHx species, and the energetics of the hydrogenation of surface C atom to methane are studied for (100) [...] Read more.
Surface carbon deposits deactivate Ni and Co catalysts in reactions involving hydrocarbons and COx. Electronic properties, adsorption energies of H, C, and CHx species, and the energetics of the hydrogenation of surface C atom to methane are studied for (100) and (111) surfaces of monometallic Ni and Co, and bimetallic NiCo. The bimetallic catalyst exhibits a Co→Ni electron donation and a concomitant increase in the magnetization of Co atoms. The CHx species resulting from sequential hydrogenation are more stable on Co than on Ni atoms of the NiCo surfaces due to more favorable (C-H)–Co agostic interactions. These interactions and differences between Co and Ni sites are more significant for (111) than for (100) bimetallic surfaces. On (111) surfaces, CH is the most stable species, and the first hydrogenation of C atom exhibits the highest barrier, followed by the CH3 hydrogenation steps. In contrast, on (100) surfaces, surface C atom is the most stable species and CH2 or *CH3 hydrogenations exhibit the highest barriers. The Gibbs free energy profiles suggest that C removal on (111) surfaces is thermodynamically favorable and exhibits a lower barrier than on the (100) surfaces. Thus, the (100) surfaces, especially Ni(100), are more prone to C poisoning. The NiCo(100) surfaces exhibit weaker binding of C and CHx species than Ni(100) and Co(100), which improves C poisoning resistance and lowers hydrogenation barriers. These results show that the electronic effects of alloying Ni and Co strongly depend on the local site composition and geometry. Full article
(This article belongs to the Special Issue Applications of Heterogeneous Catalysts in Green Chemistry)
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15 pages, 3240 KiB  
Article
Synthesis, Crystal Structure and Magnetic Properties of a Trinuclear Copper(II) Complex Based on P-Cresol-Substituted Bis(α-Nitronyl Nitroxide) Biradical
by Sabrina Grenda, Maxime Beau and Dominique Luneau
Molecules 2022, 27(10), 3218; https://doi.org/10.3390/molecules27103218 - 18 May 2022
Cited by 4 | Viewed by 3207
Abstract
Trinuclear copper(II) complex [CuII3(NIT2PhO)2Cl4] was synthesized with p-cresol-substituted bis(α-nitronyl nitroxide) biradical: 4-methyl-2,6-bis(1-oxyl-3-oxido-4,4,5,5-tetramethyl-2-imidazolin-2-yl)phenol (NIT2PhOH). The crystal structure of this heterospin complex was determined using single-crystal X-ray diffraction analysis and exhibits four unusual seven-membered [...] Read more.
Trinuclear copper(II) complex [CuII3(NIT2PhO)2Cl4] was synthesized with p-cresol-substituted bis(α-nitronyl nitroxide) biradical: 4-methyl-2,6-bis(1-oxyl-3-oxido-4,4,5,5-tetramethyl-2-imidazolin-2-yl)phenol (NIT2PhOH). The crystal structure of this heterospin complex was determined using single-crystal X-ray diffraction analysis and exhibits four unusual seven-membered metallocycles formed from the coordination of oxygen atoms of the N-O groups and of bridging phenoxo (µ-PhO) moieties with copper(II) ions. The crystal structure analysis reveals an incipient agostic interaction between a square planar copper center and a hydrogen-carbon bond from one methyl group carried on the coordinated nitronyl-nitroxide radical. The intramolecular Cu∙∙∙H-C interaction involves a six-membered metallocycle and may stabilize the copper center in square planar coordination mode. From the magnetic susceptibility measurements, the complex, which totals seven S = 1/2 spin carriers, has almost a ground state spin S = 1/2 at room temperature ascribed to strong antiferromagnetic interaction between the nitronyl nitroxide moieties and the copper(II) centers and in between the copper(II) centers through the bridging phenoxo oxygen atom. Full article
(This article belongs to the Special Issue Crystal Structures of Metal Complexes)
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18 pages, 4010 KiB  
Article
Theoretical Study of N-Heterocyclic-Carbene–ZnX2 (X = H, Me, Et) Complexes
by Mirosław Jabłoński
Materials 2021, 14(20), 6147; https://doi.org/10.3390/ma14206147 - 16 Oct 2021
Cited by 13 | Viewed by 2437
Abstract
This article discusses the properties of as many as 30 carbene–ZnX2 (X = H, Me, Et) complexes featuring a zinc bond C⋯Zn. The group of carbenes is represented by imidazol-2-ylidene and its nine derivatives (labeled as IR), in which both hydrogen atoms [...] Read more.
This article discusses the properties of as many as 30 carbene–ZnX2 (X = H, Me, Et) complexes featuring a zinc bond C⋯Zn. The group of carbenes is represented by imidazol-2-ylidene and its nine derivatives (labeled as IR), in which both hydrogen atoms of N-H bonds have been substituted by R groups with various spatial hindrances, from the smallest Me, iPr, tBu through Ph, Tol, and Xyl to the bulkiest Mes, Dipp, and Ad. The main goal is to study the relationship between type and size of R and X and both the strength of C⋯Zn and the torsional angle of the ZnX2 plane with respect to the plane of the imidazol-2-ylidene ring. Despite the considerable diversity of R and X, the range of dCZn is quite narrow: 2.12–2.20 Å. On the contrary, D0 is characterized by a fairly wide range of 18.5–27.4 kcal/mol. For the smallest carbenes, the ZnX2 molecule is either in the plane of the carbene or is only slightly twisted with respect to it. The twist angle becomes larger and more varied with the bulkier R. However, the value of this angle is not easy to predict because it results not only from the presence of steric effects but also from the possible presence of various interatomic interactions, such as dihydrogen bonds, tetrel bonds, agostic bonds, and hydrogen bonds. It has been shown that at least some of these interactions may have a non-negligible influence on the structure of the IR–ZnX2 complex. This fact should be taken into account in addition to the commonly discussed R⋯X steric repulsion. Full article
(This article belongs to the Special Issue Advances in Organocatalysts: Synthesis and Applications)
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