Search Results (66)

Research has evaluated the efficacy of various methods for eliminating endophytes from grass seeds, as well as changes in endophyte viability during seed storage under different conditions, indicating significant variation in different procedures and cultivars. Chemical seed treatment (tebuconazole and thiram) completely eliminated viable fungal mycelia, leaving no trace in any tested cultivar. Non-chemical methods, such as drying and microwave treatment, only partially reduced mycelial viability by 30.3% and 33.1%, respectively, with no statistically significant difference between them. A significant positive correlation was observed between the initial mycelial viability and its reduction. Lolium perenne cv. Vigor showed no impact from non-chemical methods, while Festuca rubra cv. Anielka exhibited the greatest reduction (79% after microwave treatment). Seed storage also impacted endophyte survival. Storage at +7 °C, +23 °C, and −20 °C reduced viability by 27.4%, 31.7%, and 37.3%, respectively. Positive correlations existed between initial viability and post-storage reductions. Similarly to elimination methods, cv. Vigor showed resistance to storage conditions. However, −20 °C storage proved least favorable for endophyte survival, particularly for Festuca pratensis cv. Artema, cv. Anielka, and Festuca ovina cv. Jolka. To maintain the viability of beneficial endophytes during seed storage, we must carefully control storage conditions, especially ambient temperature. Full article

Soybean is one of the main agricultural commodities, and its productivity is limited by several diseases, such as anthracnose, which is caused by a complex of fungal species, with Colletotrichum truncatum being the most prevalent. Management is mainly carried out through chemical seed treatment. However, a reduction in the sensitivity of C. truncatum to fungicides was observed. Therefore, it is extremely important to search for products that are effective in controlling the disease. The objectives of this study were to evaluate the efficacy of commercial formulations of copper, potassium, manganese, and zinc phosphites in the treatment of soybean seeds infected by C. truncatum, as well as their direct fungitoxicity and ability to induce soybean defense mechanisms. For this purpose, seeds inoculated with C. truncatum were subjected to phosphites and a fungicide (carbendazim + thiram). The seeds were exposed to germination, health, and vigor tests. Fungal toxicity and the ability of phosphites to induce defense through the activities of catalase, peroxidase, and superoxide dismutase enzymes, as well as the levels of lignin and total soluble phenols, were also evaluated. Mn and Zn phosphites showed direct toxicity to C. truncatum and were as effective as the fungicide (carbendazim + thiram) in treating soybean seeds infected by the fungus. Mn phosphite induced the production of catalase (CAT), peroxidase (POX) and lignin, while Zn phosphite increased the production of CAT and POX. These results demonstrate the efficacy of Mn and Zn phosphites in controlling C. truncatum in infected soybean seeds, their direct toxic action, and their ability to induce resistance. Full article

In response to the shortcomings of traditional surface-enhanced Raman spectroscopy (SERS) substrates, such as short shelf life, poor uniformity, and low selectivity, this study innovatively proposed a three-dimensional composite substrate of CNTs/Ag/AgNWs/SiO₂. This substrate demonstrates excellent SERS enhancement effects, with a detection limit of 10⁻¹² mol/L for the probe molecule Rhodamine 6G (R6G) and an enhancement factor (EF) of 8.947 × 10⁸. Further experiments confirmed the substrate’s superior uniformity and stability. The enhancement mechanism was investigated using both experimental methods and the Finite Difference Time Domain (FDTD) approach. When commonly used pesticide thiram was used as the target analyte, the detection limit of the substrate reached 0.1 mg/L, which is significantly lower than the pesticide residue standards of China and the European Union. Additionally, the genetic algorithm (GA)-optimized Back Propagation (BP) neural network was introduced for the quantitative analysis of thiram concentrations. The experimental results indicated that the GA-BP algorithm achieved the training prediction accuracy of 92.5% for thiram, demonstrating good network performance. This method shows good selectivity and has broad application prospects in the detection of toxic chemicals, environmental pollutants, and food additives. Full article

Rhizoctonia root rot and web blight caused by Rhizoctonia solani Kühn is one of the destructive diseases of the common bean (Phaseolus vulgaris L.). A two-year study was conducted (2019–2021) to evaluate the common bean landraces and genotype, biocontrol agents, and chemical fungicides against the pathogen. Nine landraces from high-altitude agriculture in the Jumla district in western Nepal (29.27443900, 82.19332200; 2540 m msl) and one genotype of commercial common bean from the sub-tropical Chitwan district in central Nepal (27.65186564, 84.34869288; 256 m masl) were evaluated for resistance against the pathogen under screenhouse and field conditions. All were found highly susceptible to the pathogen and the highest lesion length (3.02 cm) was measured in the Rato Male Simi followed by Rato Sano Chhirke Simi (2.40 cm) in Chitwan conditions. Three chemical fungicides—SAAF™ (carbendazim 12% + mancozeb 63% WP), Vitavax^® (carboxin 37.5% + thiram 37.5% DS), and Nativo^® (tebuconazole 50% + trifloxystrobin 25% w/w (75 WG)—and three biocontrol agents—Trichoderma viride (10⁹ cfu/mL), Pseudomonas fluorescens (10⁹ cfu/mL), and Bacillus subtilis (10⁸ cfu/mL)—were evaluated as seed and soil treatments in fourteen different combinations against R. solani. SAAF™ and Vitavax^® were found highly effective as they completely suppressed the incidence of pre-emergence damping off. SAAF™ was equally effective followed by Vitavax^® and Nativo^® in suppressing post-emergence damping off. On the other hand, the highest disease incidence (26.63%) was recorded in treatment where seed treatment with Pseudomonas fluorescens formulation at the rate of 10 g per kg of FYM slurry along with soil application with Pseudomonas fluorescens formulation at the rate of 10 kg per ha with 50 kg FYM was applied, whereas the lowest disease incidence (4.96%) occurred in SAAF™ for both seed and soil applications. Highest grain yield (4125 kg/ha) was recorded on Nativo^® where seed treatment at the rate of 1.5 g per kg along with soil drenching at the rate of 1.5 g per liter was used. Thus, it can be concluded that the best control for pre-emergence damping off was achieved by SAAF™ where seed treatment at the rate of 2 g per kg along with soil drenching at the rate of 2 g per liter and Vitavax^® as seed treatment at the rate of 2 g per kg along with soil drenching at the rate of 2 g per liter was used, while the best control of post-emergence damping off was achieved with combined seed treatment and soil treatment with SAAF™. There was no incidence of web blight throughout the growing period. Our findings could be useful in devising strategies for the integrated management of R. solani causing root rot disease in common beans. Full article

Functionalized plasmonic nanostructure platforms are widely used for developing optical biosensors and SERS assays. In this work, we present a low-cost and scalable surface-enhanced Raman scattering (SERS) system based on an innovative optical transducer comprising gold nanoparticles (AuNPs) embedded in nano-fibrillated bacterial cellulose (BC). The AuNPs@BC composite leverages the unique nanofibrillar architecture of bacterial cellulose, which provides a high surface area, flexibility, and uniform nanoparticle distribution, enabling the formation of numerous electromagnetic “hot spots”. This structure excites localized surface plasmon resonance (LSPR), as demonstrated by a bulk sensitivity of 72 nm/RIU, and supports enhanced Raman signal amplification. The eco-friendly and disposable AuNPs@BC platform was tested for agrifood applications, focusing on the detection of thiram pesticide. The system achieved a detection limit of 0.24 ppm (1 µM), meeting the sensitivity requirements for regulatory compliance in food safety. A strong linear correlation (R² ≈ 0.99) was observed between the SERS peak intensity at 1370 cm⁻¹ and thiram concentrations, underscoring its potential for quantitative analysis. The combination of high sensitivity, reproducibility, and environmental sustainability makes the AuNPs@BC platform a promising solution for developing cost-effective, flexible, and portable sensors for pesticide monitoring and other biosensing applications. Full article

In this work, a new surface plasmon resonance (SPR) sensor based on sulphur-doped titanium dioxide (S-TiO₂) nanostructures and molecularly imprinted polymer (MIP) was presented for thiram (THI) determination in milk samples. Firstly, the S-TiO₂ nanomaterial with a high product yield was prepared by using a facile sol-gel hydrolysis technique with a high product yield. After that, UV polymerization was carried out for the preparation of the THI-imprinted SPR chip based on S-TiO₂ using a mixture including ethylene glycol dimethacrylate (EGDMA) as the cross-linker, N,N′-azobisisobutyronitrile (AIBN) as the initiator, and methacryloylamidoglutamicacid (MAGA) as the monomer. The reliability of the sensor preparation procedure has been successfully proven by characterization studies of the prepared nanomaterials and SPR chip surfaces through spectroscopic, microscopic, and electrochemical methods. As a result, the prepared SPR sensor showed linearity in the range of 1.0 × 10⁻⁹–1.0 × 10⁻⁷ M with a detection limit (LOD) of 3.3 × 10⁻¹⁰ M in the real samples, and a sensor technique for THI determination with high sensitivity, repeatability, and selectivity can be included in the literature. Full article

There is a growing interest in the use of flexible substrates for label-free and in situ Surface-enhanced Raman Spectroscopy (SERS) applications. In this study, a flexible SERS substrate was prepared using self-assembled Au/Ti₃C₂ nanocomposites deposited on a cellulose (CS) paper. The Au/Ti₃C₂ nanocomposites uniformly wrapped around the cellulose fibers to provide a three-dimensional plasma SERS platform. The limit of detection (LOD) of CS/Au/Ti₃C₂ was as low as 10⁻⁹ M for 4-mercaptobenzoic acid(4-MBA) and crystal violet (CV), demonstrating good SERS sensitivity. CS/Au/Ti₃C₂ was used for in situ SERS detection of thiram on apple surfaces by simple swabbing, and a limit of detection of 0.05 ppm of thiram was achieved. The results showed that CS/Au/Ti₃C₂ is a flexible SERS substrate that can be used for the detection of thiram on apple surfaces. These results demonstrate that CS/Au/Ti₃C₂ can be used for the non-destructive, rapid and sensitive detection of pesticides on fruit surfaces. Full article

In this paper, a self-assembly method was used to prepare gold nanorod composites, and a seed-growth method was used to adjust the amount of AgNO₃ solution, enabling the preparation of gold nanorods with different aspect ratios. AuNRs@SiO₂ nanocomposite particles were then prepared by using the Stöber method to coat the gold nanorod surface with silica. Transmission electron microscopy showed that the maximum aspect ratio of the gold nanorods was 4.53, which was achieved using 2 mL of 10 mM AgNO₃ solution. The Raman-scattering intensity of the gold nanorods was studied using rhodamine 6G, thiram, melamine, and piroxicam, and detection limits of 10⁻⁸ M, 10⁻⁵ M, and 10⁻³ M were, respectively, achieved. As a substrate, these gold nanorods showed good repeatability and reproducibility, and trace detection was successfully achieved. A transmission electron microscopy analysis shows that the SiO₂ shell became thicker with increasing tetraethyl orthosilicate addition. Using AuNRs@SiO₂ as the base and R6G, thiram, and piroxicam as the probes, measurable detection limits of 10⁻⁹ M, 10⁻⁶ M, and 10⁻⁵ M were achieved, and this composite also showed excellent repeatability and reproducibility. Full article

In this research, a method was developed for fabricating Au–Au nanorod array substrates through the deposition of large-area Au nanostructures on an Au nanorod array using a galvanic cell reaction. The incorporation of a granular structure enhanced both the number and intensity of surface-enhanced Raman scattering (SERS) hot spots on the substrate, thereby elevating the SERS performance beyond that of substrates composed solely of an Au nanorod. Calculations using the finite difference time domain method confirmed the generation of a strong electromagnetic field around the nanoparticles. Motivated by the electromotive force, Au ions in the chloroauric acid solution were reduced to form nanostructures on the nanorod array. The size and distribution density of these granular nanostructures could be modulated by varying the reaction time and the concentration of chloroauric acid. The resulting Au–Au nanorod array substrate exhibited an active, uniform, and reproducible SERS effect. With 1,2-bis(4-pyridyl)ethylene as the probe molecule, the detection sensitivity of the Au–Au nanorod array substrate was enhanced to 10⁻¹¹ M, improving by five orders of magnitude over the substrate consisting only of an Au nanorod array. For a practical application, this substrate was utilized for the detection of pesticides, including thiram, thiabendazole, carbendazim, and phosmet, within the concentration range of 10⁻⁴ to 5 × 10⁻⁷ M. An analytical model combining a random forest and a one-dimensional convolutional neural network, referring to the important variable-one-dimensional convolutional neural network model, was developed for the precise identification of thiram. This approach demonstrated significant potential for biochemical sensing and rapid on-site identification. Full article

Quinoa saponins are pentacyclic triterpene compounds composed of one triterpenoid glycoside and two different sugar chains. Previous studies have showed that natural quinoa saponins showed little or no antifungal activity, and there are few reports about their antifungal effects in recent decades. Fusarium wilt caused by Fusarium oxysporum f. sp. lycopersici (FOL) is the most serious for tomatoes in the field and under greenhouse conditions. The main objective of this study was to investigate the effectiveness of different concentrations and application modes of crude saponins from quinoa bran against the causal pathogen of tomato wilt under a greenhouse experiment. The results showed that the anti-FOL activity of quinoa saponins was weak in vitro, but significantly enhanced in vivo. Tomato seeds and seedlings treated with solution of quinoa saponins at 0.5 and 1.0 g/L significantly reduced the disease incidence (%) of tomato Fusarium wilt. The treatment types of saponin solution have influence on the preventive effects (%) of tomato seedlings against Fusarium wilt, among them, root soaking > foliar spray > seed soaking. The treatment of seed soaking with quinoa saponins inhibited germination of tomato seeds to some extent. However, the germination rate of tomato seeds after saponin soaking was comparable to the chemical pesticide (thiram carboxin); therefore, it could be used to control tomato wilt disease. This is due to the fact that the antifungal activity of quinoa saponins in vivo was much higher than that in vitro when the saponin concentration was between 0.5–1.0 g/L, indicating that the antifungal activity of quinoa saponins may be achieved mainly by inducing resistance. This investigation supports the potential use of quinoa saponins as a supplier of antifungal compounds, and could be the foundation for a future study examining the use of quinoa bran as a new resource against FOL. Full article

Fungal diseases, including downy mildew (caused by Plasmopara viticola) and gray mold (caused by Botrytis cinerea), significantly impact the marketable yield of grapes produced worldwide. Cytochrome b of the mitochondrial respiratory chain of these two fungi is a key target for Quinone outside inhibitor (QoI)-based fungicide development. Since the mode of action (MOA) of QoI fungicides is restricted to a single site, the extensive usage of these fungicides has resulted in fungicide resistance. The use of fungicide combinations with multiple targets is an effective way to counter and slow down the development of fungicide resistance. Due to the high cost of in planta trials, in silico techniques can be used for the rapid screening of potential fungicides. In this study, a combination of in silico simulations that include Schrödinger Glide docking, molecular dynamics, and Molecular Mechanism-Generalized Born Surface Area calculation were used to screen the most potent QoI and non-QoI-based fungicide combinations to wild-type, G143A-mutated, F129L-mutated, and double-mutated versions that had both G143A and F129L mutations of fungal cytochrome b. In silico docking studies indicated that mandestrobin, famoxadone, captan, and thiram have a high affinity toward WT cytochrome b of Botrytis cinerea. Although the QoIs mandestrobin and famoxadone were effective for WT based on in vitro results, they were not broadly effective against G143A-mutated isolates. Famoxadone was only effective against one isolate with G143A-mutated cytochrome b. The non-QoI fungicides thiram and captan were effective against both WT and isolates with G143A-mutated cytochrome b. Follow-up in silico docking and molecular dynamics studies suggested that fungicide combinations consisting of famoxadone, mandestrobin, fenamidone, and thiram should be considered in field testing targeting Plasmopara viticola and Botrytis cinerea fungicide resistance. Full article

Surface-enhanced Raman spectroscopy (SERS) is widely used as a detection method in scientific research fields. However, the method for creating SERS substrates often requires expensive equipment and involves a complex process. Additionally, preserving and effectively utilizing SERS substrates in the long term poses a challenging problem. In order to address these issues, we propose a new method for creating SERS substrates on various types of paper using a combination of a ballpoint pen and 3D printing. This method ensures a high enhancement factor and maximizes the utilization of the substrate. We achieved an enhancement factor of up to 8.2 × 10⁸ for detecting R6G molecules, with a relative standard deviation of 11.13% for the Raman peak at 612 cm⁻¹ of R6G, demonstrating excellent SERS sensitivity and spectral reproducibility. Furthermore, we successfully detected thiram at a concentration as low as 10⁻⁸, which is lower than both the Chinese national standard and European standard. Full article

Over the years, Eucalyptus plantations have rapidly expanded in Sarawak, Malaysia, accounting for 19% of the total forest plantation area. In a routine forest health surveillance conducted in 2022 at Sarawak, Malaysia, tree stands of Eucalyptus urograndis (Eucalyptus grandis × Eucalyptus urophylla hybrid) were detected with symptoms of stem canker disease caused by Chrysoporthe infection. Given the limited information on the chemical control of Chrysoporthe stem canker disease, there is a growing need to develop effective chemical control strategies to protect and cure Chrysoporthe infection on E. urograndis trees. Therefore, this study aimed to identify the causal pathogen of this stem canker disease in 7-year-old E. urograndis trees in Sarawak, Malaysia, and evaluate the efficacy of various fungicides as curative or protectant treatments on canker infection using artificial inoculation methods. Fungal isolates were first collected and subjected to molecular identification and pathogenicity analysis. Then, in vitro efficacy tests were evaluated using five licensed fungicides: thiram, prochloraz manganese chloride, copper hydroxide, dimethomorph, and mancozeb. Subsequently, the performance of these fungicides was assessed through preventive and curative field experiments on 10-year-old E. urograndis trees using the artificial inoculation technique. Based on the morphological and phylogenetic analysis of the ITS1/ITS4, β-tubulin 2 (BT2), and the combined ITS1/ITS4 and BT2 sequences extracted from 20 fungal isolates, Chrysoporthe deuterocubensis was identified as the causal pathogen of the canker disease, with isolate CHRY18 recording the highest virulence. The in vitro efficacy tests showed that prochloraz manganese chloride achieved 100% inhibition against C. deuterocubensis at 1.0 mg/mL. In the preventive experiment, thiram significantly inhibited C. deuterocubensis infection, yielding the shortest lesion length (19.40 mm) compared to the non-treated control (47.48 mm) at 20 weeks post-inoculation. In the curative experiment, a significant reduction of 54.7% in lesion length was observed in inoculated symptomatic trees after 20 weeks of post-fungicide treatment with copper hydroxide. In conclusion, this study demonstrated prochloraz manganese chloride, thiram, and copper hydroxide as effective chemical controls of C. deuterocubensis stem canker on E. urograndis. Full article

Organized two-dimensional polystyrene bead arrays perform ion etching, and protruding nanostructures are created on polystyrene beads due to the shadow effects from the ring beads, leading to nucleus selection and growth in Au nanostructure deposition. Ag nanostructures are prepared via plasmon-mediated chemical reactions (PMCRs), leading to the Ag nanocavity geometry of the honeycomb pattern when the etching time and Ag growth time are tuned. Due to the strong electromagnetic coupling, the Ag honeycomb-shaped nanocavity array works as the SERS substrate with high sensitivity and good repeatability, which is used to detect thiram pesticide residues with a concentration down to 10⁻⁹ M. Full article