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Keywords = OSSAP

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39 pages, 2153 KB  
Article
OSSAPTestingPlus: A Blockchain-Based Collaborative Framework for Enhancing Trust and Integrity in Distributed Agile Testing of Archaeological Photogrammetry Open-Source Software
by Omer Aziz, Muhammad Shoaib Farooq, Junaid Nasir Qureshi, Muhammad Faraz Manzoor and Momina Shaheen
Information 2025, 16(11), 992; https://doi.org/10.3390/info16110992 - 17 Nov 2025
Viewed by 499
Abstract
(1) Background: A blockchain-based framework for distributed agile Open-Source Software for Archaeological Photogrammetry (OSSAP) testing life cycle is an innovative approach that uses blockchain technology to optimize the Open-Source Software for Archaeological Photogrammetry process. Previously, various methods have been employed to address communication [...] Read more.
(1) Background: A blockchain-based framework for distributed agile Open-Source Software for Archaeological Photogrammetry (OSSAP) testing life cycle is an innovative approach that uses blockchain technology to optimize the Open-Source Software for Archaeological Photogrammetry process. Previously, various methods have been employed to address communication and collaboration challenges in Open-Source Software for Archaeological Photogrammetry, but they were inadequate in aspects such as trust, traceability, and security. Additionally, a significant cause of project failure was the non-completion of unit testing by developers, leading to delayed testing. (2) Methods: This article discusses the integration of blockchain technology in Open-Source Software for Archaeological Photogrammetry and resolves critical concerns related to transparency, trust, coordination, testing and communication. A novel approach is proposed based on a blockchain framework named Open-Source Software for Archaeological Photogrammetry Testing-Plus. (3) Results: The Open-Source Software for Archaeological Photogrammetry Testing-Plus framework utilizes blockchain technology to provide a secure and transparent platform for acceptance testing and payment verification. Moreover, by leveraging smart contracts on a private Ethereum blockchain, Open-Source Software for Archaeological Photogrammetry Testing-Plus ensures that both the testing team and the development team are working towards a common goal and are compensated fairly for their contributions. (4) Conclusions: The experimental results conclusively show that this innovative approach substantially improves transparency, trust, coordination, testing and communication and provides security for both the testing team and the development team engaged in the distributed agile Open-Source Software for Archaeological Photogrammetry (Open-Source Software for Archaeological Photogrammetry) testing life cycle. Full article
(This article belongs to the Special Issue Blockchain and AI: Innovations and Applications in ICT)
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14 pages, 3156 KB  
Article
Spermidine Induces Expression of Stress Associated Proteins (SAPs) Genes and Protects Rice Seed from Heat Stress-Induced Damage during Grain-Filling
by Min Chen, Yuying Fu, Qingshan Mou, Jianyu An, Xiaobo Zhu, Temoor Ahmed, Sheng Zhang, Farwa Basit, Jin Hu and Yajing Guan
Antioxidants 2021, 10(10), 1544; https://doi.org/10.3390/antiox10101544 - 28 Sep 2021
Cited by 23 | Viewed by 3966
Abstract
Heat stress during seed maturation significantly reduced seed size and quality. Polyamines, especially spermidine (Spd), were reported to be closely related to seed development and plant heat tolerance. Stress-associated proteins (SAPs) also played a critical role in plant heat resistance, but the relationship [...] Read more.
Heat stress during seed maturation significantly reduced seed size and quality. Polyamines, especially spermidine (Spd), were reported to be closely related to seed development and plant heat tolerance. Stress-associated proteins (SAPs) also played a critical role in plant heat resistance, but the relationship between Spd and SAPs in improving rice tolerance to heat stress during grain filling has not been reported. Our results showed that the external spraying Spd (1.5 mM) significantly increased seed germination rate, germination index, vigor index and 1000-grain weight, significantly increased endogenous Spd, spermine (Spm) content and peroxidase activity; significantly reduced MDA content; and greatly alleviated the impact of heat stress on rice seed quality during grain filling stage as compared with high temperature control. OsSAP5 was the most upregulated expression induced by Spd, and may be mainly involved in the Spd-mediated enhancement of high-temperature resistance during rice seed development. Overexpression of OsSAP5 in Arabidopsis enhanced 1000-grain weight and seed heat resistance. Exogenous Spd alleviated the survival rate and seedling length, reduced MDA content, and upregulated the expression levels of SPDS and SPMS in Atsap4 mutant under high temperature during seed germination. In all, exogenous Spd alleviated the heat damage on seed quality during the grain filling stage and seed germination stage by improving endogenous Spd and Spm. OsSAP5, a key gene induced by Spd, might be involved in the rice heat resistance and seed quality in coordination with Spd and Spm. Full article
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20 pages, 4158 KB  
Article
Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice
by Se Eun Jung, Seung Woon Bang, Sung Hwan Kim, Jun Sung Seo, Ho-Bin Yoon, Youn Shic Kim and Ju-Kon Kim
Int. J. Mol. Sci. 2021, 22(14), 7656; https://doi.org/10.3390/ijms22147656 - 17 Jul 2021
Cited by 57 | Viewed by 6067
Abstract
Abiotic stresses severely affect plant growth and productivity. To cope with abiotic stresses, plants have evolved tolerance mechanisms that are tightly regulated by reprogramming transcription factors (TFs). APETALA2/ethylene-responsive factor (AP2/ERF) transcription factors are known to play an important role in various abiotic stresses. [...] Read more.
Abiotic stresses severely affect plant growth and productivity. To cope with abiotic stresses, plants have evolved tolerance mechanisms that are tightly regulated by reprogramming transcription factors (TFs). APETALA2/ethylene-responsive factor (AP2/ERF) transcription factors are known to play an important role in various abiotic stresses. However, our understanding of the molecular mechanisms remains incomplete. In this study, we identified the role of OsERF83, a member of the AP2/ERF transcription factor family, in response to drought stress. OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA). Overexpression of OsERF83 in transgenic plants (OsERF83OX) significantly increased drought tolerance, with higher photochemical efficiency in rice. OsERF83OX was also associated with growth retardation, with reduced grain yields under normal growth conditions. OsERF83 is predominantly expressed in the vascular tissue of all organs. Transcriptome analysis revealed that OsERF83 regulates drought response genes, which are related to the transporter (OsNPF8.10, OsNPF8.17, OsLH1), lignin biosynthesis (OsLAC17, OsLAC10, CAD8D), terpenoid synthesis (OsTPS33, OsTPS14, OsTPS3), cytochrome P450 family (Oscyp71Z4, CYP76M10), and abiotic stress-related genes (OsSAP, OsLEA14, PCC13-62). OsERF83 also up-regulates biotic stress-associated genes, including PATHOGENESIS-RELATED PROTEIN (PR), WALL-ASSOCIATED KINASE (WAK), CELLULOSE SYNTHASE-LIKE PROTEIN E1 (CslE1), and LYSM RECEPTOR-LIKE KINASE (RLK) genes. Our results provide new insight into the multiple roles of OsERF83 in the cross-talk between abiotic and biotic stress signaling pathways. Full article
(This article belongs to the Special Issue Drought-Stress Induced Physiological and Molecular Changes in Plants)
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15 pages, 1687 KB  
Article
Genetic Dissection of Germinability under Low Temperature by Building a Resequencing Linkage Map in japonica Rice
by Shukun Jiang, Chao Yang, Quan Xu, Lizhi Wang, Xianli Yang, Xianwei Song, Jiayu Wang, Xijuan Zhang, Bo Li, Hongyu Li, Zhugang Li and Wenhua Li
Int. J. Mol. Sci. 2020, 21(4), 1284; https://doi.org/10.3390/ijms21041284 - 14 Feb 2020
Cited by 32 | Viewed by 4070
Abstract
Among all cereals, rice is highly sensitive to cold stress, especially at the germination stage, which adversely impacts its germination ability, seed vigor, crop stand establishment, and, ultimately, grain yield. The dissection of novel quantitative trait loci (QTLs) or genes conferring a low-temperature [...] Read more.
Among all cereals, rice is highly sensitive to cold stress, especially at the germination stage, which adversely impacts its germination ability, seed vigor, crop stand establishment, and, ultimately, grain yield. The dissection of novel quantitative trait loci (QTLs) or genes conferring a low-temperature germination (LTG) ability can significantly accelerate cold-tolerant rice breeding to ensure the wide application of rice cultivation through the direct seeding method. In this study, we identified 11 QTLs for LTG using 144 recombinant inbred lines (RILs) derived from a cross between a cold-tolerant variety, Lijiangxintuanheigu (LTH), and a cold-sensitive variety, Shennong265 (SN265). By resequencing two parents and RIL lines, a high-density bin map, including 2,828 bin markers, was constructed using 123,859 single-nucleotide polymorphisms (SNPs) between two parents. The total genetic distance corresponding to all 12 chromosome linkage maps was 2,840.12 cm. Adjacent markers were marked by an average genetic distance of 1.01 cm, corresponding to a 128.80 kb physical distance. Eight and three QTL alleles had positive effects inherited from LTH and SN265, respectively. Moreover, a pleiotropic QTL was identified for a higher number of erected panicles and a higher grain number on Chr-9 near the previously cloned DEP1 gene. Among the LTG QTLs, qLTG3 and qLTG7b were also located at relatively small genetic intervals that define two known LTG genes, qLTG3-1 and OsSAP16. Sequencing comparisons between the two parents demonstrated that LTH possesses qLTG3-1 and OsSAP16 genes, and SN-265 owns the DEP1 gene. These comparison results strengthen the accuracy and mapping resolution power of the bin map and population. Later, fine mapping was done for qLTG6 at 45.80 kb through four key homozygous recombinant lines derived from a population with 1569 segregating plants. Finally, LOC_Os06g01320 was identified as the most possible candidate gene for qLTG6, which contains a missense mutation and a 32-bp deletion/insertion at the promoter between the two parents. LTH was observed to have lower expression levels in comparison with SN265 and was commonly detected at low temperatures. In conclusion, these results strengthen our understanding of the impacts of cold temperature stress on seed vigor and germination abilities and help improve the mechanisms of rice breeding programs to breed cold-tolerant varieties. Full article
(This article belongs to the Special Issue Molecular Research in Rice: Agronomically Important Traits)
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