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Keywords = Morro Bay

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13 pages, 5006 KB  
Article
Application of Deep Learning for Classification of Intertidal Eelgrass from Drone-Acquired Imagery
by Krti Tallam, Nam Nguyen, Jonathan Ventura, Andrew Fricker, Sadie Calhoun, Jennifer O’Leary, Mauriça Fitzgibbons, Ian Robbins and Ryan K. Walter
Remote Sens. 2023, 15(9), 2321; https://doi.org/10.3390/rs15092321 - 28 Apr 2023
Cited by 12 | Viewed by 4433
Abstract
Shallow estuarine habitats are globally undergoing rapid changes due to climate change and anthropogenic influences, resulting in spatiotemporal shifts in distribution and habitat extent. Yet, scientists and managers do not always have rapidly available data to track habitat changes in real-time. In this [...] Read more.
Shallow estuarine habitats are globally undergoing rapid changes due to climate change and anthropogenic influences, resulting in spatiotemporal shifts in distribution and habitat extent. Yet, scientists and managers do not always have rapidly available data to track habitat changes in real-time. In this study, we apply a novel and a state-of-the-art image segmentation machine learning technique (DeepLab) to two years of high-resolution drone-based imagery of a marine flowering plant species (eelgrass, a temperate seagrass). We apply the model to eelgrass (Zostera marina) meadows in the Morro Bay estuary, California, an estuary that has undergone large eelgrass declines and the subsequent recovery of seagrass meadows in the last decade. The model accurately classified eelgrass across a range of conditions and sizes from meadow-scale to small-scale patches that are less than a meter in size. The model recall, precision, and F1 scores were 0.954, 0.723, and 0.809, respectively, when using human-annotated training data and random assessment points. All our accuracy values were comparable to or demonstrated greater accuracy than other models for similar seagrass systems. This study demonstrates the potential for advanced image segmentation machine learning methods to accurately support the active monitoring and analysis of seagrass dynamics from drone-based images, a framework likely applicable to similar marine ecosystems globally, and one that can provide quantitative and accurate data for long-term management strategies that seek to protect these vital ecosystems. Full article
(This article belongs to the Special Issue Remote Sensing of Marine Environment)
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16 pages, 10792 KB  
Article
Determining Extinction for Small Cryptic Species: The Morro Bay Kangaroo Rat
by Jaran Hopkins, Tim Bean and Francis Villablanca
Diversity 2023, 15(2), 245; https://doi.org/10.3390/d15020245 - 9 Feb 2023
Cited by 1 | Viewed by 3166
Abstract
One third of missing mammal species thought to be extinct have been rediscovered. Determining extinction correctly, without misinterpreting negative evidence, is difficult and takes significant effort, especially for small, cryptic species. The Morro Bay kangaroo rat (MBKR), Dipodomys heermanni morroensis, is a [...] Read more.
One third of missing mammal species thought to be extinct have been rediscovered. Determining extinction correctly, without misinterpreting negative evidence, is difficult and takes significant effort, especially for small, cryptic species. The Morro Bay kangaroo rat (MBKR), Dipodomys heermanni morroensis, is a small nocturnal rodent suspected of being extinct. This is because it has not been seen since 1986 despite three range-wide surveys conducted between 1995 and 2012, a recent scent-detecting dog survey, and over a dozen localized surveys. Causes of decline have been reported and the primary causes are thought to be development-driven habitat loss and ecological succession. Given this, we suspect that if the MBKR is extant, then it occurs in the periphery of its historical range. We summarize a survey of the Morro Bay sandspit, an area not previously considered part of MBKR’s range but that has the potential to be occupied. Inferences from the subspecies’ closest relative, Dipodomys heermanni arenae, were used to inform surveys and detection probability estimates for MBKR. Visual surveys of the sandspit in areas with the greatest probability of displaying signs yielded few occurrences of possible signs. Camera traps were deployed in winter and summer at locations with possible signs, but, despite occupancy model detection probabilities of 0.88 in winter and 0.97 in summer, there were no detections of MBKR. Given detection probability estimates inferred from Dipodomys heermanni arenae, the conditional occupancy estimate that MBKR are present on the sandspit but were missed by all cameras on all nights of surveying is extremely low (5 × 10−6). We conclude that the MBKR is not present on the Morro Bay sandspit, at least not in the habitat where its presence was most likely to be detected. Future surveys for this small, cryptic species will need to adapt to a combination of low expected occupancy and high expected detection probability. Full article
(This article belongs to the Special Issue Adaptive Evolution and Management in Small Mammals)
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19 pages, 6898 KB  
Article
Slash Pile Burn Scar Restoration: Tradeoffs between Abundance of Non-Native and Native Species
by Ian Sexton, Philip Turk, Lindsay Ringer and Cynthia S. Brown
Forests 2020, 11(8), 813; https://doi.org/10.3390/f11080813 - 28 Jul 2020
Cited by 5 | Viewed by 3634
Abstract
The accumulation of live and dead trees and other vegetation in forests across the western United States is producing larger and more severe wildfires. To decrease wildfire severity and increase forest resilience, foresters regularly remove excess fuel by burning woody material in piles. [...] Read more.
The accumulation of live and dead trees and other vegetation in forests across the western United States is producing larger and more severe wildfires. To decrease wildfire severity and increase forest resilience, foresters regularly remove excess fuel by burning woody material in piles. This common practice could also cause persistent ecosystem changes such as the alteration of soil physical and chemical properties due to extreme soil heating, which can favor invasion by non-native plant species. The abundance and species richness of native plant communities may also remain depressed for many years after burning has removed vegetation and diminished propagules in the soil. This adds to the vulnerability of burned areas to the colonization and dominance by invasive species. Research into the use of revegetation techniques following pile burning to suppress invasion is limited. Studies conducted in various woodland types that investigated revegetation of pile burn scars have met with varying success. To assess the effectiveness of restoring pile burn scars in Rocky Mountain National Park, Colorado, we monitored vegetation in 26 scars, each about 5 m in diameter, the growing season after burning. Later that summer, we selected 14 scars for restoration that included soil scarification, seed addition, and pine duff mulch cover. We monitored the scars for four years, pre-restoration, and three years post-restoration and found that the cover of seeded species exceeded the surrounding unburned areas and unseeded controls. The restoration seeding suppressed cover of non-native species as well as native species that were not seeded during restoration. Our results suggest that restoration of pile burn scars could be a useful tool to retard the establishment of invasive plant species when there are pre-existing infestations near scars. However, this must be weighed against the simultaneous suppression of native species recruitment. Monitoring for periods more than three years will help us understand how long the suppression of native and non-native species by restoration species may persist. Full article
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22 pages, 1976 KB  
Article
Fishing Community Sustainability Planning: A Roadmap and Examples from the California Coast
by Laurie Richmond, Robert Dumouchel, Henry Pontarelli, Laura Casali, Wyatt Smith, Kathryn Gillick, Pamela Godde, Michelle Dowling and Alyssa Suarez
Sustainability 2019, 11(7), 1904; https://doi.org/10.3390/su11071904 - 30 Mar 2019
Cited by 12 | Viewed by 6147
Abstract
Fishing communities are facing a variety of challenges including declines in participation, reduced access to fish resources, aging physical infrastructure, gentrification, competition from foreign imports, the “graying” or aging of their fleets, along with a host of environmental stressors. These factors can represent [...] Read more.
Fishing communities are facing a variety of challenges including declines in participation, reduced access to fish resources, aging physical infrastructure, gentrification, competition from foreign imports, the “graying” or aging of their fleets, along with a host of environmental stressors. These factors can represent threats to the continued viability of individual fishing communities. Such communities are clearly in need of tools that will enable them to plan strategically and to be more proactive in charting a sustainable future. This manuscript provides a roadmap for how to engage fishing communities in a bottom-up strategic planning process termed “fishing community sustainability planning” by describing implementation efforts in four diverse California ports: Morro Bay, Monterey, Shelter Cove, and Eureka. The process draws from the literature on sustainability and community development to assess fishing community sustainability around four broad categories: economics and markets; social and community; physical infrastructure and critical services; environment and regulation. Process steps included developing a project team and community coalition, analyzing baseline data, conducting interviews with waterfront stakeholders, hosting public workshops, and drafting a Fishing Community Sustainability Plan (FCSP) that includes concrete recommendations for how a community’s fishing industry and waterfront can be improved. Experiences from the four ports reveal that fishing community sustainability planning can be adapted to a variety of contexts and can contribute tangible benefits to communities. However, there are limitations to what community-scale planning can achieve, as many regulatory decisions that affect communities are enacted at the state or national level. Combining community-level planning with scaled-up fishing community sustainability planning efforts at the state and federal level could help overcome these limitations. FCSP planning is one tool fishing communities should consider as they seek to address threats and plan for their long-term viability. Full article
(This article belongs to the Special Issue Seafood Sustainability - Series I)
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36 pages, 557 KB  
Article
Laying the Foundation for Transdisciplinary Faculty Collaborations: Actions for a Sustainable Future
by Linda Vanasupa, Lizabeth Schlemer, Roger Burton, Courtney Brogno, Ginger Hendrix and Neal MacDougall
Sustainability 2014, 6(5), 2893-2928; https://doi.org/10.3390/su6052893 - 14 May 2014
Cited by 17 | Viewed by 9688
Abstract
How can academicians who desire a sustainable future successfully participate in transdisciplinary projects? Transcending our hidden thought patterns is required. Paradoxically, the disciplinary specialization that enabled the industrial era and its metaphors now function to undermine our ability to recognize and participate in [...] Read more.
How can academicians who desire a sustainable future successfully participate in transdisciplinary projects? Transcending our hidden thought patterns is required. Paradoxically, the disciplinary specialization that enabled the industrial era and its metaphors now function to undermine our ability to recognize and participate in the transformational learning that is needed. In this paper, we offer a post-industrial era metaphor for transdisciplinarity—that of complex dynamic system—that has helped us to work through the unexpected experiences encountered in the process of transformative learning. These insights are based on an ongoing transdisciplinary research collaboration (2008–present) using action research methods; we focus on the faculty experience. Accepting the metaphors of complex systems, we describe the systemic conditions that seem to repeatedly reproduce the emergence of transformative learning for participants, as well as what one might expect to experience in the process. These experiences include: conflict, existential crisis, transformation and renewed vitality within the necessary context of a safe and caring community. Without the adoption of complexity metaphors, these elements would have been overlooked or interpreted as a hindrance to the work. These insights are intended to serve as socially robust knowledge to support the effective participation of faculty members in sustainability projects of a transdisciplinary nature. Full article
(This article belongs to the Special Issue Education and Skills for the Green Economy)
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