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Detailed mapping and structural observations on the Cycladic Blueschist Unit (CBU) on Iraklia Island integrated with detrital zircon (DZ) U-Pb ages elucidate the Mesozoic pre-subduction and the Cenozoic orogenic evolution. Iraklia tectonostratigraphy includes a heterogeneous Lower Schist Fm., juxtaposed against a Marble Fm. and an overlying Upper Schist Fm. The contact is an extensional ductile-to-brittle-ductile, top-to-N shear zone, kinematically associated with the Oligo-Miocene exhumation. The DZ spectra of the Lower Schist have Gondwanan/peri-Gondwanan provenance signatures and point to Late Triassic Maximum Depositional Ages (MDAs). A quartz-rich schist lens yielded Precambrian DZ ages exclusively and is interpreted as part of the pre-Variscan metasedimentary Cycladic Basement, equivalent to schists of the Ios Island core. The Upper Schist represents a distinctly different stratigraphic package with late Cretaceous MDAs and dominance of Late Paleozoic DZ ages, suggestive of a more internal Pelagonian source. The contrast in the DZ U-Pb record between Lower and Upper Schist likely reflects the difference between a Paleotethyan and Neotethyan geodynamic imprint. The Triassic DZ input from eroded volcanic material is related to the final Paleotethys closure and Pindos/CBU rift basin opening, while late Cretaceous metamorphic/magmatic zircons and ~48–56 Ma zircon rims constrain the onset of Neotethyan convergence and high-pressure subduction metamorphism. Full article