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Keywords = HoBi-like pestivirus

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18 pages, 1343 KB  
Review
A Critical Review of Bovine Viral Diarrhea Virus: Spotlights on Host Plasticity and Potential Spillover Events
by Eaftekhar Ahmed Rana, M. Asaduzzaman Prodhan, Joshua W. Aleri, Syeda Hasina Akter, Henry Annandale, Sam Abraham, Subir Sarker, Jully Gogoi-Tiwari and Jasim Muhammad Uddin
Viruses 2025, 17(9), 1221; https://doi.org/10.3390/v17091221 - 7 Sep 2025
Cited by 2 | Viewed by 1876
Abstract
The bovine viral diarrhea virus (BVDV) infects a wide range of domestic and wild mammals. This review hypothesized that there might be cross-species transmission of BVDV. Therefore, the aim was to explore the BVDV-5′ UTR and N-pro sequence-based evidence to understand host plasticity [...] Read more.
The bovine viral diarrhea virus (BVDV) infects a wide range of domestic and wild mammals. This review hypothesized that there might be cross-species transmission of BVDV. Therefore, the aim was to explore the BVDV-5′ UTR and N-pro sequence-based evidence to understand host plasticity among different animals. A total of 146 unique BVDV sequences retrieved from GenBank, originating from 12 distinct mammalian species that are submitted from 55 countries, were analyzed. The phylogenetic analysis revealed that all three BVDV species exhibited genetic relatedness infecting diverse animal species. BVDV-1 sequences obtained from cattle, buffalo, and pigs and BVDV-2 and HoBi-like pestivirus sequences from cattle, goats, and sheep showed a genetic resemblance. Surprisingly, cattle and buffalo in China, cattle and yak in Mongolia, cattle and wild boar in Serbia, cattle and deer in Mexico, cattle and alpacas in Canada, goats and pigs in the USA, and sheep and buffalo in Argentina were infected with BVDV-1 within the same county and strongly positioned in the same cluster, indicating potential spillover with host tropism. Moreover, BVDV sequences isolated from various neighboring countries clustered closely, suggesting potential cross-border transmission events. Based on genomic evidence, the BVDV transmission cycle could be depicted, where cattle act as a primary source of infection, while other domestic and wild animals maintain the infection ecology within their habitat due to virus tropism. Full article
(This article belongs to the Section Animal Viruses)
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24 pages, 1931 KB  
Systematic Review
A Systematic Review and Meta-Analysis of Bovine Pestivirus Prevalence and Associated Risk Factors in Latin America
by Blanca Lisseth Guzmán Barragán, Isac Roman, Yessica Lorena Guzmán and Fernando Vicosa Bauermann
Pathogens 2025, 14(6), 530; https://doi.org/10.3390/pathogens14060530 - 26 May 2025
Viewed by 2125
Abstract
Bovine pestiviruses, namely bovine viral diarrhea virus (BVDV) and HoBi-like pestiviruses (HoBiPevs), are endemic viruses in Latin America, and the disease causes significant losses in the agricultural sector. The present review aims to perform a systematic assessment and meta-analysis of the prevalence of [...] Read more.
Bovine pestiviruses, namely bovine viral diarrhea virus (BVDV) and HoBi-like pestiviruses (HoBiPevs), are endemic viruses in Latin America, and the disease causes significant losses in the agricultural sector. The present review aims to perform a systematic assessment and meta-analysis of the prevalence of bovine pestiviruses in Latin America and their risk factors. Notable heterogeneity was observed in the analyzed groups, with significant prevalence variations based on age and country. However, no differences were found between temporal trends, production systems, or models. Identified risk factors included age, breed, location, reproductive practices, animal purchase, farm management, and biosecurity measures. This systematic review and meta-analysis of BVDV in Latin America provides critical insights to inform decision-making and strategic actions for disease control in the region. The high serological prevalence of bovine pestivirus across Latin America underscores the urgent need for standardized surveillance programs, biosecurity reinforcement, and targeted vaccination strategies. The presence of HoBiPev further complicates current diagnostic and control measures. Future research should focus on disease transmission dynamics, economic impact assessments, and the effectiveness of intervention programs tailored to the region’s diverse livestock production systems. Full article
(This article belongs to the Special Issue Current Challenges in Veterinary Virology)
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16 pages, 2408 KB  
Article
Whole-Genome-Sequence-Based Evolutionary Analyses of HoBi-like Pestiviruses Reveal Insights into Their Origin and Evolutionary History
by Semmannan Kalaiyarasu, Niranjan Mishra, Saravanan Subramaniam, Dashprakash Moorthy, Shashi Bhusan Sudhakar, Vijendra Pal Singh and Aniket Sanyal
Viruses 2023, 15(3), 733; https://doi.org/10.3390/v15030733 - 11 Mar 2023
Cited by 4 | Viewed by 2649
Abstract
HoBi-like pestivirus (HoBiPeV), classified under Pestivirus H species, is an emerging cattle pathogen of high economic impact. However, the origin and evolution of HoBiPeV are not very clear due to a lack of full genomic sequences from diverse clades. This study aimed to [...] Read more.
HoBi-like pestivirus (HoBiPeV), classified under Pestivirus H species, is an emerging cattle pathogen of high economic impact. However, the origin and evolution of HoBiPeV are not very clear due to a lack of full genomic sequences from diverse clades. This study aimed to determine full-genome sequences of HoBiPeV strains of three novel clades (c, d and e) and perform full-genome-based genetic and evolutionary analyses. Bayesian phylogenetic analyses herein confirmed the existence and independent evolution of four main HoBiPeV clades (a, c, d and e) globally, with genetic divergence ranging from 13.0% to 18.2%. Our Bayesian molecular clock estimates revealed that HoBiPeV most likely originated in India, with a dated tMRCA of 1938 (1762–2000), evidencing a more recent origin of HoBiPeV. The evolution rate of HoBiPeV was estimated to be 2.133 × 10−3 subs/site/year at full-genome level but varied widely among individual genes. Selection pressure analyses identified most of the positively selected sites in E2. Additionally, 21.8% of the ORF codon sites were found under strong episodic diversifying selection, providing first evidence of negative selection in HoBiPeV evolution. No recombination event was evident for HoBiPeV-c, d and e strains. These findings provide new insights into HoBiPeV origin and evolutionary history for better understanding the epidemiology and host–pathogen interactions and stimulate vaccine research. Full article
(This article belongs to the Special Issue Applications of Next-Generation Sequencing in Virus Discovery 2.0)
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14 pages, 1510 KB  
Article
HoBi-like Pestivirus Is Highly Prevalent in Cattle Herds in the Amazon Region (Northern Brazil)
by Leticia F. Baumbach, Ana Cristina S. Mósena, Raquel S. Alves, Laura J. Camargo, Juliana C. Olegário, Leonardo R. Lobraico, João Marcos N. Costa, Mauro R. Borba, Fernando V. Bauermann, Matheus N. Weber and Cláudio W. Canal
Viruses 2023, 15(2), 453; https://doi.org/10.3390/v15020453 - 6 Feb 2023
Cited by 5 | Viewed by 3613
Abstract
Pestiviruses are globally distributed and cause substantial economic losses to the cattle industry. In Brazil, the country with the world’s largest cattle population, pestivirus infections are well described in some regions, such as in the south, where a high frequency of BVDV-2 is [...] Read more.
Pestiviruses are globally distributed and cause substantial economic losses to the cattle industry. In Brazil, the country with the world’s largest cattle population, pestivirus infections are well described in some regions, such as in the south, where a high frequency of BVDV-2 is described and contrasts with the high prevalence of HoBi-like pestivirus (HoBiPeV) in the northeast. However, there is a lack of information about pestiviruses in the Amazon Region, in northern Brazil, with a cattle population estimated at 55.7 million head, which has a significant impact on the international livestock market. Therefore, this study investigated the seroprevalence and genetic variability of ruminant pestiviruses in 944 bovine serum samples from four states in northern Brazil: Pará (PA), Amapá (AP), Roraima (RR), and Amazonas (AM). Our results showed that 45.4% of the samples were seropositive (19.8% for BVDV-1, 14.1% for BVDV-2, and 20.9% for HoBiPeV). All samples were tested by RT–qPCR, and three were positive and classified as HoBiPeV in a phylogenetic analysis. These serological and molecular results contrast with those from other regions of the world, suggesting that the northern Brazilian states have a high prevalence of all bovine pestiviruses including HoBiPeV. Full article
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