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Keywords = Cabomba

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14 pages, 2038 KB  
Article
Herbicide-Induced Fragmentation: Regenerative Ability of Cabomba Fragments After Exposure to Flumioxazin
by Junfeng Xu, Tobias Oliver Bickel and Steve Adkins
Biology 2025, 14(8), 1023; https://doi.org/10.3390/biology14081023 - 8 Aug 2025
Viewed by 289
Abstract
Cabomba caroliniana A. Gray (cabomba) is an invasive alien aquatic plant (IAAP) posing a significant threat to aquatic ecosystems in Australia. Its ongoing spread is primarily driven by its rapid growth rate and ability to readily regenerate from stem fragments. Flumioxazin, an effective [...] Read more.
Cabomba caroliniana A. Gray (cabomba) is an invasive alien aquatic plant (IAAP) posing a significant threat to aquatic ecosystems in Australia. Its ongoing spread is primarily driven by its rapid growth rate and ability to readily regenerate from stem fragments. Flumioxazin, an effective herbicide for controlling cabomba, has been registered for use in Australia since 2021. However, exposing cabomba to flumioxazin can induce stem fragmentation, potentially facilitating further spread. This study aims to determine whether stem fragments of cabomba following treatment at different flumioxazin doses (i.e., 25, 50, 100, or 200 ppb a.i.) can regenerate new healthy shoots that could contribute to its future spread in a new environment, in either summer or winter. This study also aims to investigate how this regrowth potential changes over time after herbicide application. Results show that flumioxazin suppressed the regeneration of replanted stem fragments in a dose-dependent manner in both winter and summer. In winter, complete regeneration was suppressed at the highest concentration tested (200 ppb a.i.), while low concentrations (25 and 50 ppb a.i.) resulted in an average 45% lower regeneration rate and 93% lower regenerated biomass than the control. In summer, suppression of regeneration was lower; at 200 ppb a.i., partial regeneration (18%) occurred with a 97% biomass reduction. At lower concentrations (25 and 50 ppb a.i.), more stem fragments regenerated (66%) and biomass reduction was lower (69%) compared to winter. Furthermore, in summer, the plants gradually regained their ability to regenerate over time after herbicide exposure, regardless of flumioxazin concentration, while no such recovery occurred in winter at any concentration. The findings show that the highest tested dose (200 ppb a.i.) can effectively suppress cabomba regenerative ability, which will greatly reduce the risk of new infestations caused by dispersed fragments, particularly in winter, when cooler temperatures and lower light are suboptimal for cabomba growth. This suggests that winter may be a more effective season for flumioxazin application. However, since some regeneration still occurred in summer, even at the highest tested dose, the highest registered label rate (400 ppb a.i.) may be necessary to ensure effective suppression under warmer conditions. Further studies are needed to evaluate this higher dose and its long-term efficacy. Full article
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18 pages, 4662 KB  
Article
Complete Chloroplast Genome Sequence of a New Variety of Brasenia schreberi: Genome Characteristics, Comparative Analysis, and Phylogenetic Relationships
by Yue Sun, Mengyao Li, Junying Ma, Maolin He and Yangxia Zheng
Agronomy 2022, 12(12), 2972; https://doi.org/10.3390/agronomy12122972 - 26 Nov 2022
Cited by 2 | Viewed by 2242
Abstract
This study sequenced and assembled the chloroplast (cp) genome of Brasenia schreberi cv. ‘Mahu Chuncai’, a novel variety of B. schreberi rich in nutrients with distinctive characteristics, unlike other varieties in China. The cpDNA genome of ‘Mahu Chuncai’ has a typical quadripartite structure, [...] Read more.
This study sequenced and assembled the chloroplast (cp) genome of Brasenia schreberi cv. ‘Mahu Chuncai’, a novel variety of B. schreberi rich in nutrients with distinctive characteristics, unlike other varieties in China. The cpDNA genome of ‘Mahu Chuncai’ has a typical quadripartite structure, with a full length of 158,973 bp, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The phylogenetic analysis revealed that all species can be divided into three main clades. Results from inverted repeats (IR) boundary analysis revealed substantial differences between Brasenia and Cabomba species. The cpDNA genome of B. schreberi identified was strongly related to Brasenia species but appeared to be a distant relative of Cabomba aquatica more than other species in Cabombaceae. In contrast with the species from Cabombaceae, ‘Mahu Chuncai’ was a close relative of B. schreberi MN315507.1, which was a distant relative of C. aquatica MG720559.1. Furthermore, we found four potential molecular markers, i.e., ycf1 in the IR region, psbT in the LSC region, and ndhF and rps15 in the SSC region. Collectively, our findings confirm the phylogenetic evolution and cultivation origin of B. schreberi. We identified genetic characteristics and nucleotide diversity hotspots, which provides a theoretical basis for additional research on variety identification, germplasm resources, and molecular breeding of the precious vegetable. Full article
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21 pages, 9407 KB  
Article
Autonomous Robotics for Identification and Management of Invasive Aquatic Plant Species
by Maharshi Patel, Shaphan Jernigan, Rob Richardson, Scott Ferguson and Gregory Buckner
Appl. Sci. 2019, 9(12), 2410; https://doi.org/10.3390/app9122410 - 13 Jun 2019
Cited by 12 | Viewed by 7160
Abstract
Invasive aquatic plant species can expand rapidly throughout water bodies and cause severely adverse economic and ecological impacts. While mechanical, chemical, and biological methods exist for the identification and treatment of these invasive species, they are manually intensive, inefficient, costly, and can cause [...] Read more.
Invasive aquatic plant species can expand rapidly throughout water bodies and cause severely adverse economic and ecological impacts. While mechanical, chemical, and biological methods exist for the identification and treatment of these invasive species, they are manually intensive, inefficient, costly, and can cause collateral ecological damage. To address current deficiencies in aquatic weed management, this paper details the development of a small fleet of fully autonomous boats capable of subsurface hydroacoustic imaging (to scan aquatic vegetation), machine learning (for automated weed identification), and herbicide deployment (for vegetation control). These capabilities aim to minimize manual labor and provide more efficient, safe (reduced chemical exposure to personnel), and timely weed management. Geotagged hydroacoustic imagery of three aquatic plant varieties (Hydrilla, Cabomba, and Coontail) was collected and used to create a software pipeline for subsurface aquatic weed classification and distribution mapping. Employing deep learning, the novel software achieved a classification accuracy of 99.06% after training. Full article
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17 pages, 894 KB  
Article
Bioinformatic Workflows for Generating Complete Plastid Genome Sequences—An Example from Cabomba (Cabombaceae) in the Context of the Phylogenomic Analysis of the Water-Lily Clade
by Michael Gruenstaeudl, Nico Gerschler and Thomas Borsch
Life 2018, 8(3), 25; https://doi.org/10.3390/life8030025 - 21 Jun 2018
Cited by 14 | Viewed by 6541
Abstract
The sequencing and comparison of plastid genomes are becoming a standard method in plant genomics, and many researchers are using this approach to infer plant phylogenetic relationships. Due to the widespread availability of next-generation sequencing, plastid genome sequences are being generated at breakneck [...] Read more.
The sequencing and comparison of plastid genomes are becoming a standard method in plant genomics, and many researchers are using this approach to infer plant phylogenetic relationships. Due to the widespread availability of next-generation sequencing, plastid genome sequences are being generated at breakneck pace. This trend towards massive sequencing of plastid genomes highlights the need for standardized bioinformatic workflows. In particular, documentation and dissemination of the details of genome assembly, annotation, alignment and phylogenetic tree inference are needed, as these processes are highly sensitive to the choice of software and the precise settings used. Here, we present the procedure and results of sequencing, assembling, annotating and quality-checking of three complete plastid genomes of the aquatic plant genus Cabomba as well as subsequent gene alignment and phylogenetic tree inference. We accompany our findings by a detailed description of the bioinformatic workflow employed. Importantly, we share a total of eleven software scripts for each of these bioinformatic processes, enabling other researchers to evaluate and replicate our analyses step by step. The results of our analyses illustrate that the plastid genomes of Cabomba are highly conserved in both structure and gene content. Full article
(This article belongs to the Special Issue Open Science Phyloinformatics: Resources, Methods, and Analyses)
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16 pages, 966 KB  
Article
Freshwater Plants Synthesize Sulfated Polysaccharides: Heterogalactans from Water Hyacinth (Eicchornia crassipes)
by Nednaldo Dantas-Santos, Dayanne Lopes Gomes, Leandro Silva Costa, Sara Lima Cordeiro, Mariana Santos Santana Pereira Costa, Edvaldo Silva Trindade, Célia Regina Chavichiolo Franco, Kátia Castanho Scortecci, Edda Lisboa Leite and Hugo Alexandre Oliveira Rocha
Int. J. Mol. Sci. 2012, 13(1), 961-976; https://doi.org/10.3390/ijms13010961 - 17 Jan 2012
Cited by 34 | Viewed by 12107
Abstract
Sulfated polysaccharides (SP) are found mainly in seaweeds and animals. To date, they have only been found in six plants and all inhabit saline environments. Furthermore, there are no reports of SP in freshwater or terrestrial plants. As such, this study investigated the [...] Read more.
Sulfated polysaccharides (SP) are found mainly in seaweeds and animals. To date, they have only been found in six plants and all inhabit saline environments. Furthermore, there are no reports of SP in freshwater or terrestrial plants. As such, this study investigated the presence of SP in freshwaters Eichhornia crassipes, Egeria densa, Egeria naja, Cabomba caroliniana, Hydrocotyle bonariensis and Nymphaea ampla. Chemical analysis identified sulfate in N. ampla, H. bonariensis and, more specifically, E. crassipes. In addition, chemical analysis, FT-IR spectroscopy, histological analysis, scanning electron microscopy (SEM) and energy-dispersive X-ray analysis (EDXA), as well as agarose gel electrophoresis detected SP in all parts of E. crassipes, primarily in the root (epidermis and vascular bundle). Galactose, glucose and arabinose are the main monosaccharides found in the sulfated polysaccharides from E. crassipes. In activated partial thromboplastin time (APTT) test, to evaluate the intrinsic coagulation pathway, SP from the root and rhizome prolonged the coagulation time to double the baseline value, with 0.1 mg/mL and 0.15 mg/mL, respectively. However, SP from the leaf and petiole showed no anticoagulant activity. Eichornia SP demonstrated promising anticoagulant potential and have been selected for further studies on bioguided fractionation; isolation and characterization of pure polysaccharides from this species. Additionally in vivo experiments are needed and are already underway. Full article
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