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Keywords = BinCARD

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23 pages, 1791 KiB  
Article
Prediction of Antibiotic Resistance Genes in Cyanobacterial Strains by Whole Genome Sequencing
by Duarte Balata, Tânia Rosado, Francisco Pina-Martins, Vera Manageiro, Carina Menezes, Eugénia Ferreira, Octávio S. Paulo, Manuela Caniça and Elsa Dias
Microorganisms 2025, 13(6), 1252; https://doi.org/10.3390/microorganisms13061252 - 28 May 2025
Viewed by 480
Abstract
Cyanobacteria are ubiquitous in freshwater environments, but their role in aquatic resistome remains unclear. In this work, we performed whole genome sequencing on 43 cyanobacterial strains isolated from Portuguese fresh/wastewaters. From 43 available non-axenic unicyanoabacterial cultures (containing only one cyanobacterial strain and their [...] Read more.
Cyanobacteria are ubiquitous in freshwater environments, but their role in aquatic resistome remains unclear. In this work, we performed whole genome sequencing on 43 cyanobacterial strains isolated from Portuguese fresh/wastewaters. From 43 available non-axenic unicyanoabacterial cultures (containing only one cyanobacterial strain and their co-occurring bacteria), it was possible to recover 41 cyanobacterial genomes from the genomic assemblies using a genome binning software, 26 of which were classified as high-quality based on completeness, contamination, N50 and contig number thresholds. By using the comprehensive antibiotic resistance database (CARD) on the assembled samples, we detected four antibiotic resistance gene (ARG) variants, conferring resistance in pathogenic bacteria to tetracyclines, fluoroquinolones (adeF-type) and macrolides (ermF-type, mefC-type and mphG-type). Among these, adeF-type was the most prevalent gene, found across 11 cyanobacterial genomes from the Nostocales order. Planktothrix presented the highest variety of close ARG matches, with hits for the macrolide resistance genes ermF-type, mefC-type and mphG-type. An analysis of the genomic assemblies also revealed an additional 12 ARGs in bacteria from the phyla Firmicutes, Proteobacteria and Bacteroidetes, present in the cyanobacterial cultures, foreseeing the horizontal gene transfer of ARGs with cyanobacteria. Additionally, more than 200 partial ARGs were detected on each recovered cyanobacterial genome, allowing for future studies of antibiotic resistance genotype/phenotype in cyanobacteria. These findings highlight the importance of further efforts to understand the role of cyanobacteria on the aquatic resistome from a One Health perspective. Full article
(This article belongs to the Special Issue New Insights into the Antibiotic Resistance of Aquatic Microorganisms)
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19 pages, 29063 KiB  
Article
CARD19 Interacts with Mitochondrial Contact Site and Cristae Organizing System Constituent Proteins and Regulates Cristae Morphology
by Kariana E. Rios, Ming Zhou, Nathaniel M. Lott, Chelsi R. Beauregard, Dennis P. McDaniel, Thomas P. Conrads and Brian C. Schaefer
Cells 2022, 11(7), 1175; https://doi.org/10.3390/cells11071175 - 31 Mar 2022
Cited by 3 | Viewed by 4603
Abstract
CARD19 is a mitochondrial protein of unknown function. While CARD19 was originally reported to regulate TCR-dependent NF-κB activation via interaction with BCL10, this function is not recapitulated ex vivo in primary murine CD8+ T cells. Here, we employ a combination of SIM, [...] Read more.
CARD19 is a mitochondrial protein of unknown function. While CARD19 was originally reported to regulate TCR-dependent NF-κB activation via interaction with BCL10, this function is not recapitulated ex vivo in primary murine CD8+ T cells. Here, we employ a combination of SIM, TEM, and confocal microscopy, along with proteinase K protection assays and proteomics approaches, to identify interacting partners of CARD19 in macrophages. Our data show that CARD19 is specifically localized to the outer mitochondrial membrane. Through deletion of functional domains, we demonstrate that both the distal C-terminus and transmembrane domain are required for mitochondrial targeting, whereas the CARD is not. Importantly, mass spectrometry analysis of 3×Myc-CARD19 immunoprecipitates reveals that CARD19 interacts with the components of the mitochondrial intermembrane bridge (MIB), consisting of mitochondrial contact site and cristae organizing system (MICOS) components MIC19, MIC25, and MIC60, and MICOS-interacting proteins SAMM50 and MTX2. These CARD19 interactions are in part dependent on a properly folded CARD. Consistent with previously reported phenotypes upon siRNA silencing of MICOS subunits, absence of CARD19 correlates with irregular cristae morphology. Based on these data, we propose that CARD19 is a previously unknown interacting partner of the MIB and the MIC19–MIC25–MIC60 MICOS subcomplex that regulates cristae morphology. Full article
(This article belongs to the Special Issue 10th Anniversary of Cells—Advances in Organelle Function)
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17 pages, 16102 KiB  
Article
Public Participation in Designing the Recycling Bins to Encourage Recycling
by Kiriaki M. Keramitsoglou and Konstantinos P. Tsagarakis
Sustainability 2018, 10(4), 1240; https://doi.org/10.3390/su10041240 - 18 Apr 2018
Cited by 35 | Viewed by 23344
Abstract
Recycling bin design has been shown to be important in guiding and changing waste management practices. The top-down imposition of recycling scheme components, the various colour signage, the different types of recycling bins per material even in the same city, and in light [...] Read more.
Recycling bin design has been shown to be important in guiding and changing waste management practices. The top-down imposition of recycling scheme components, the various colour signage, the different types of recycling bins per material even in the same city, and in light of the limitations cited in the relevant literature, our contribution examines the citizens’ involvement in designing recycling bins. Analyzing the responses of 757 participants randomly selected, we initially defined design variables, i.e., shape, colour, and type of lid and insert slot. The next step was to design six bins per recyclable and non-recyclable material, which were printed in a card in a random order. In total, 12 cards were evaluated by 430 residents of a typical Greek town without previous experience in recycling; personal interviews were conducted and citizens gave a score on a scale from one to six. The results highlight the public preference for specific lids and insert slots, and a rectangular shape for all the materials apart from glass and compostables for engaging in recycling. In addition, the results suggest that a connection might exist between the colour of the recyclable material and the colour of the bin. When there is no particular bin colour preference for a material such as plastic or packages, various hues of orange, yellow, or purple dominate. A reward phrase or environmental message printed on the bins could encourage recycling. Full article
(This article belongs to the Collection Trends in Municipal Solid Waste Management)
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