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Keywords = Aquimarina sp.

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21 pages, 3080 KiB  
Article
Chitinolytic and Fungicidal Potential of the Marine Bacterial Strains Habituating Pacific Ocean Regions
by Iuliia Pentekhina, Olga Nedashkovskaya, Aleksandra Seitkalieva, Vladimir Gorbach, Lubov Slepchenko, Natalya Kirichuk, Anna Podvolotskaya, Oksana Son, Liudmila Tekutyeva and Larissa Balabanova
Microorganisms 2023, 11(9), 2255; https://doi.org/10.3390/microorganisms11092255 - 8 Sep 2023
Cited by 2 | Viewed by 2447
Abstract
Screening for chitinolytic activity in the bacterial strains from different Pacific Ocean regions revealed that the highly active representatives belong to the genera Microbulbifer, Vibrio, Aquimarina, and Pseudoalteromonas. The widely distributed chitinolytic species was Microbulbifer isolated from the sea [...] Read more.
Screening for chitinolytic activity in the bacterial strains from different Pacific Ocean regions revealed that the highly active representatives belong to the genera Microbulbifer, Vibrio, Aquimarina, and Pseudoalteromonas. The widely distributed chitinolytic species was Microbulbifer isolated from the sea urchin Strongylocentrotus intermedius. Among seventeen isolates with confirmed chitinolytic activity, only the type strain P. flavipulchra KMM 3630T and the strains of putatively new species Pseudoalteromonas sp. B530 and Vibrio sp. Sgm 5, isolated from sea water (Vietnam mollusc farm) and the sea urchin S. intermedius (Peter the Great Gulf, the Sea of Japan), significantly suppressed the hyphal growth of Aspergillus niger that is perspective for the biocontrol agents’ development. The results on chitinolytic activities and whole-genome sequencing of the strains under study, including agarolytic type strain Z. galactanivorans DjiT, found the new functionally active chitinase structures and biotechnological potential. Full article
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27 pages, 4173 KiB  
Article
Insights into the Antimicrobial Activities and Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species from the Rare Marine Biosphere
by Sandra Godinho Silva, Patrícia Paula, José Paulo da Silva, Dalila Mil-Homens, Miguel Cacho Teixeira, Arsénio Mendes Fialho, Rodrigo Costa and Tina Keller-Costa
Mar. Drugs 2022, 20(7), 423; https://doi.org/10.3390/md20070423 - 28 Jun 2022
Cited by 19 | Viewed by 5460
Abstract
Two novel natural products, the polyketide cuniculene and the peptide antibiotic aquimarin, were recently discovered from the marine bacterial genus Aquimarina. However, the diversity of the secondary metabolite biosynthetic gene clusters (SM-BGCs) in Aquimarina genomes indicates a far greater biosynthetic potential. In [...] Read more.
Two novel natural products, the polyketide cuniculene and the peptide antibiotic aquimarin, were recently discovered from the marine bacterial genus Aquimarina. However, the diversity of the secondary metabolite biosynthetic gene clusters (SM-BGCs) in Aquimarina genomes indicates a far greater biosynthetic potential. In this study, nine representative Aquimarina strains were tested for antimicrobial activity against diverse human-pathogenic and marine microorganisms and subjected to metabolomic and genomic profiling. We found an inhibitory activity of most Aquimarina strains against Candida glabrata and marine Vibrio and Alphaproteobacteria species. Aquimarina sp. Aq135 and Aquimarina muelleri crude extracts showed particularly promising antimicrobial activities, amongst others against methicillin-resistant Staphylococcus aureus. The metabolomic and functional genomic profiles of Aquimarina spp. followed similar patterns and were shaped by phylogeny. SM-BGC and metabolomics networks suggest the presence of novel polyketides and peptides, including cyclic depsipeptide-related compounds. Moreover, exploration of the ‘Sponge Microbiome Project’ dataset revealed that Aquimarina spp. possess low-abundance distributions worldwide across multiple marine biotopes. Our study emphasizes the relevance of this member of the microbial rare biosphere as a promising source of novel natural products. We predict that future metabologenomics studies of Aquimarina species will expand the spectrum of known secondary metabolites and bioactivities from marine ecosystems. Full article
(This article belongs to the Special Issue Reef Ecology and Marine Drug Discovery)
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9 pages, 1430 KiB  
Article
Isolation of Jannaschia sedimins sp. nov. from East Coast of China: Bacterial Taxonomy and Antimicrobial Resistance Analysis
by Sha Sha, Shuqian Li, Lihua Zhao, Jinxin Zhao and Guanjun Chen
Appl. Sci. 2022, 12(6), 2883; https://doi.org/10.3390/app12062883 - 11 Mar 2022
Viewed by 2157
Abstract
A Gram-stain-negative, facultatively aerobic, pink and oval bacterium, designed OS4T, was isolated from a sediment sample taken from a coastal zone in China. The growth of OS4T occurred at 20–37 °C (optimal 25 °C), pH 7.0–8.5 (optimal pH 8.0), in [...] Read more.
A Gram-stain-negative, facultatively aerobic, pink and oval bacterium, designed OS4T, was isolated from a sediment sample taken from a coastal zone in China. The growth of OS4T occurred at 20–37 °C (optimal 25 °C), pH 7.0–8.5 (optimal pH 8.0), in 0–5.0% (w/v) NaCl (optimal 2.0%). According to the phylogenetic analysis, strain OS4T showed the highest sequence similarity (96.04%) with Jannaschia aquimarina GSW-M26T and shared 94.98% similarity with the type species of genus Jannaschia-strain J. helgolandensis 14858T. Chemotaxonomic analysis showed that the sole respiratory quinone was ubiquinone 10, and the major fatty acids (>5.0%) included C18:1 ω6c/ω7c, C18:0, and C10:0 3OH. The polar lipids consist of three phospholipids, two unknown amino-lipids, and four unknown glycerolipids. The DNA G + C content was 72.7 mol%. Based on the evidence presented in this study, strain OS4T represents a novel species of the genus Jannaschia, for which the name Jannaschia sedimins sp. nov. is proposed. The type strain is OS4T (=KCTC 82508T = MCCC 1K03755T). Both the phenotypic and the genetic analysis on the antimicrobial resistance genes indicate that OS4T is resistant to a wide range of classes of antibiotics, which highlights that the ocean could potentially serve as the natural reservoir of antimicrobial resistance genes. Full article
(This article belongs to the Special Issue New Frontiers into Environmental Microbiology)
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9 pages, 11966 KiB  
Article
Chemical Investigation of Diketopiperazines and N-Phenethylacetamide Isolated from Aquimarina sp. MC085 and Their Effect on TGF-β-Induced Epithelial–Mesenchymal Transition
by Myong Jin Lee, Geum Jin Kim, Myoung-Sook Shin, Jimin Moon, Sungjin Kim, Joo-Won Nam, Ki Sung Kang and Hyukjae Choi
Appl. Sci. 2021, 11(19), 8866; https://doi.org/10.3390/app11198866 - 23 Sep 2021
Cited by 9 | Viewed by 2344
Abstract
Chemical investigations of Aquimarina sp. MC085, which suppressed TGF-β-induced epithelial–mesenchymal transition (EMT) in A549 human lung cancer cells, led to the isolation of compounds 13. Structural characterization using spectroscopic data analyses in combination with Marfey’s analysis revealed that they were [...] Read more.
Chemical investigations of Aquimarina sp. MC085, which suppressed TGF-β-induced epithelial–mesenchymal transition (EMT) in A549 human lung cancer cells, led to the isolation of compounds 13. Structural characterization using spectroscopic data analyses in combination with Marfey’s analysis revealed that they were two diketopiperazines [cyclo(l-Pro-l-Leu) (1) and cyclo(l-Pro-l-Ile) (2)] and one N-phenethylacetamide (3). Cyclo(l-Pro-l-Leu) (1) and N-phenethylactamide (3) inhibited the TGF-β/Smad pathway and suppressed the metastasis of A549 cells by affecting TGF-β-induced EMT. However, cyclo(l-Pro-l-Ile) (2) downregulated mesenchymal factors via a non-Smad-mediated signaling pathway. Full article
(This article belongs to the Special Issue Drugs from Marine Sources)
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13 pages, 2760 KiB  
Article
Inhibition of A549 Lung Cancer Cell Migration and Invasion by Ent-Caprolactin C via the Suppression of Transforming Growth Factor-β-Induced Epithelial—Mesenchymal Transition
by So Young Kim, Myoung-Sook Shin, Geum Jin Kim, Hyukbean Kwon, Myong Jin Lee, Ah-Reum Han, Joo-Won Nam, Chan-Hun Jung, Ki Sung Kang and Hyukjae Choi
Mar. Drugs 2021, 19(8), 465; https://doi.org/10.3390/md19080465 - 19 Aug 2021
Cited by 11 | Viewed by 4562
Abstract
The epithelial–mesenchymal transition (EMT) of cancer cells is a crucial process in cancer cell metastasis. An Aquimarina sp. MC085 extract was found to inhibit A549 human lung cancer cell invasion, and caprolactin C (1), a new natural product, α-amino-ε-caprolactam linked to [...] Read more.
The epithelial–mesenchymal transition (EMT) of cancer cells is a crucial process in cancer cell metastasis. An Aquimarina sp. MC085 extract was found to inhibit A549 human lung cancer cell invasion, and caprolactin C (1), a new natural product, α-amino-ε-caprolactam linked to 3-methyl butanoic acid, was purified through bioactivity-guided isolation of the extract. Furthermore, its enantiomeric compound, ent-caprolactin C (2), was synthesized. Both 1 and 2 inhibited the invasion and γ-irradiation-induced migration of A549 cells. In transforming growth factor-β (TGF-β)-treated A549 cells, 2 inhibited the phosphorylation of Smad2/3 and suppressed the EMT cell marker proteins (N-cadherin, β-catenin, and vimentin), as well as the related messenger ribonucleic acid expression (N-cadherin, matrix metalloproteinase-9, Snail, and vimentin), while compound 1 did not suppress Smad2/3 phosphorylation and the expression of EMT cell markers. Therefore, compound 2 could be a potential candidate for antimetastatic agent development, because it suppresses TGF-β-induced EMT. Full article
(This article belongs to the Special Issue Marine Drug Research in Korea)
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