Search Results (4)

Soil salinization poses an important threat to terrestrial ecosystems and is expected to increase as a consequence of climate change and anthropogenic pressures. Conventional methods such as salt-leaching or application of soil amendments, or nature-based solutions (NBSs) such as phytoremediation, have been widely adopted with contrasting results. The use of cyanobacteria for improving soil conditions has emerged as a novel biotechnological tool for ecosystem restoration due to the unique features of these organisms, e.g., ability to fix carbon and nitrogen and promote soil stabilisation. Cyanobacteria distribute over a wide range of salt concentrations and several species can adapt to fluctuating salinity conditions. Their application in agricultural saline soil remediation has been demonstrated, mostly in laboratory studies, but there is a lack of research regarding their use in natural ecosystems restoration. In this article, we provide an overview of the current knowledge on cyanobacteria in the context of ecosystem restoration. Examples of the application of cyanobacteria in alleviating salt-stress in plants and soils are presented. Furthermore, we acknowledge gaps regarding the extensive application of cyanobacteria in salt-affected soils remediation and discuss the challenges of NBSs in salt-affected soils restoration. Full article

Soil contamination by potentially toxic trace elements (PTEs) such as Cadmium (Cd), is a major environmental concern because of its potential implications to human health. Cacao-based products have been identified as food sources with relatively high Cd contents. Here, we assessed Cd concentrations of cacao-growing soils in four major agricultural regions with contrasting climates in Peru, one of the main exporters of cacao products worldwide. At each study site (n = 40) a broad range of potential factors affecting Cd concentration in soils, i.e., site, soil and management, were evaluated. Concentrations of Cd ranged between 1.1–3.2 mg kg⁻¹. Mean values per region were below 2.7 mg kg⁻¹, usually established as upper-limit for non-polluted soils. Cadmium concentrations were significantly (p < 0.001) higher in sites at higher elevations and in a temperate, drier climate. Cadmium correlated positively with pH (r = 0.57; p < 0.05) and was higher (p < 0.001) in alluvial sediments and Leptosols. Management factors (cacao variety, cultivation year, management practices) and agroecology did not affect Cd concentrations directly. Overall, this study highlights the importance of considering a broad range of both natural and anthropogenic factors to evaluate Cd concentrations in cacao-growing soils and contribute to effective and sustainable cacao production by improving land management and planning. Full article

The dramatic growth of the world’s population is increasing the pressure on natural resources, particularly on soil systems. At the same time, inappropriate agricultural practices are causing widespread soil degradation. Improved management of soil resources and identification of the potential agricultural capability of soils is therefore needed to prevent further land degradation, particularly in dryland areas such as Egypt. Here, we present a case study in the El-Fayoum depression (Northern Egypt) to model and map soil suitability for 12 typical Mediterranean crops. Two management scenarios were analyzed: the current situation (CS) and an optimal scenario (OS) of soil variables. The Almagra model was applied to estimate soil suitability under CS and OS. Management options based on the CS assessment were proposed to reduce some limiting factors: a fixed value of 2 dSm⁻¹ for soil salinity and 5% for sodium saturation; these defined the OS. Under optimal management, the OS scenario showed potential, where a notable increase of the area covered by a high suitability class (around 80%) for annual and semi-annual crops was observed. There was also a marked increase (about 70% for CS and 50% for OS) for perennial crops shifting from the marginal to moderate soil suitability class. The results reveal the importance of proper management to massively alter soil suitability into better states in order to achieve sustainable land use in this fertile agro-ecosystem. Full article

Colorectal cancer (CRC) shows aggregation in some families but no alterations in the known hereditary CRC genes. We aimed to identify new candidate genes which are potentially involved in germline predisposition to familial CRC. An integrated analysis of germline and tumor whole-exome sequencing data was performed in 18 unrelated CRC families. Deleterious single nucleotide variants (SNV), short insertions and deletions (indels), copy number variants (CNVs) and loss of heterozygosity (LOH) were assessed as candidates for first germline or second somatic hits. Candidate tumor suppressor genes were selected when alterations were detected in both germline and somatic DNA, fulfilling Knudson’s two-hit hypothesis. Somatic mutational profiling and signature analysis were also performed. A series of germline-somatic variant pairs were detected. In all cases, the first hit was presented as a rare SNV/indel, whereas the second hit was either a different SNV (3 genes) or LOH affecting the same gene (141 genes). BRCA2, BLM, ERCC2, RECQL, REV3L and RIF1 were among the most promising candidate genes for germline CRC predisposition. The identification of new candidate genes involved in familial CRC could be achieved by our integrated analysis. Further functional studies and replication in additional cohorts are required to confirm the selected candidates. Full article