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Authors = Irja Saar ORCID = 0000-0001-8453-9721

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55 pages, 20327 KiB  
Article
Holarctic Species in the Pluteus podospileus Clade: Description of Six New Species and Reassessment of Old Names
by Hana Ševčíková, Ekaterina F. Malysheva, Vladimír Antonín, Jan Borovička, Francesco Dovana, Giuliano Ferisin, Guillaume Eyssartier, Django Grootmyers, Jacob Heilmann-Clausen, Jacob Kalichman, Oğuzhan Kaygusuz, Renée Lebeuf, Guillermo Muñoz González, Andrew M. Minnis, Stephen D. Russell, Irja Saar, Ida Broman Nielsen, Tobias Guldberg Frøslev and Alfredo Justo
J. Fungi 2023, 9(9), 898; https://doi.org/10.3390/jof9090898 - 31 Aug 2023
Cited by 11 | Viewed by 4029
Abstract
We studied the taxonomy of Pluteus podospileus and similar species using morphological and molecular (nrITS, TEF1-α) data, including a detailed study of the type collections of P. inflatus var. alneus, Pluteus minutissimus f. major, and P. granulatus var. tenellus. Within [...] Read more.
We studied the taxonomy of Pluteus podospileus and similar species using morphological and molecular (nrITS, TEF1-α) data, including a detailed study of the type collections of P. inflatus var. alneus, Pluteus minutissimus f. major, and P. granulatus var. tenellus. Within the P. podospileus complex, we phylogenetically confirmed six species in Europe, five in Asia, and eight in North America. Based on our results, we recognize P. seticeps as a separate species occurring in North America, while P. podospileus is limited to Eurasia. We describe six new species and a new variety: P. absconditus, P. fuscodiscus, P. gausapatus, P. inexpectatus, P. millsii, and P. notabilis and its variety, P. notabilis var. insignis. We elevate Pluteus seticeps var. cystidiosus to species rank as Pluteus cystidiosus. Based on the holotype of P. inflatus var. alneus, collections of P. inflatus identified by Velenovský, and several modern collections, we resurrect the name P. inflatus. Based on molecular analyses of syntypes of Pluteus minutissimus f. major and a holotype of Pluteus granulatus var. tenellus, we synonymize them under P. inflatus. We also increase our knowledge about the morphology and distribution of P. cutefractus. Full article
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23 pages, 4444 KiB  
Article
What Do the First 597 Global Fungal Red List Assessments Tell Us about the Threat Status of Fungi?
by Gregory M. Mueller, Kelmer Martins Cunha, Tom W. May, Jessica L. Allen, James R. S. Westrip, Cátia Canteiro, Diogo Henrique Costa-Rezende, Elisandro Ricardo Drechsler-Santos, Aída M. Vasco-Palacios, Antony Martyn Ainsworth, Genivaldo Alves-Silva, Frank Bungartz, Amanda Chandler, Susana C. Gonçalves, Irmgard Krisai-Greilhuber, Reda Iršėnaitė, John Bjarne Jordal, Thiago Kosmann, James Lendemer, Richard Troy McMullin, Armin Mešić, Viviana Motato-Vásquez, Yoshihito Ohmura, Rikke Reese Næsborg, Claudia Perini, Irja Saar, Diego Simijaca, Rebecca Yahr and Anders Dahlbergadd Show full author list remove Hide full author list
Diversity 2022, 14(9), 736; https://doi.org/10.3390/d14090736 - 7 Sep 2022
Cited by 44 | Viewed by 14662
Abstract
Fungal species are not immune to the threats facing animals and plants and are thus also prone to extinction. Yet, until 2015, fungi were nearly absent on the IUCN Red List. Recent efforts to identify fungal species under threat have significantly increased the [...] Read more.
Fungal species are not immune to the threats facing animals and plants and are thus also prone to extinction. Yet, until 2015, fungi were nearly absent on the IUCN Red List. Recent efforts to identify fungal species under threat have significantly increased the number of published fungal assessments. The 597 species of fungi published in the 2022-1 IUCN Red List update (21 July 2022) are the basis for the first global review of the extinction risk of fungi and the threats they face. Nearly 50% of the assessed species are threatened, with 10% NT and 9% DD. For regions with a larger number of assessments (i.e., Europe, North America, and South America), subanalyses are provided. Data for lichenized and nonlichenized fungi are also summarized separately. Habitat loss/degradation followed by climate change, invasive species, and pollution are the primary identified threats. Bias in the data is discussed along with knowledge gaps. Suggested actions to address these gaps are provided along with a discussion of the use of assessments to facilitate on-the-ground conservation efforts. A research agenda for conservation mycology to assist in the assessment process and implementation of effective species/habitat management is presented. Full article
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26 pages, 6142 KiB  
Article
Pluteus insidiosus Complex, Four New Species Described and Pluteus reisneri Resurrected
by Hana Ševčíková, Giuliano Ferisin, Ekaterina Malysheva, Alfredo Justo, Jacob Heilmann-Clausen, Egon Horak, Lyudmila Kalinina, Oğuzhan Kaygusuz, Henning Knudsen, Nelson Menolli, Pierre-Arthur Moreau, Guillermo Muñoz González, Irja Saar, İbrahim Türkekul and Francesco Dovana
J. Fungi 2022, 8(6), 623; https://doi.org/10.3390/jof8060623 - 10 Jun 2022
Cited by 10 | Viewed by 4631
Abstract
We studied the taxonomy of Pluteus insidiosus and similar species using morphological and molecular (nrITS, TEF1-α) data, including a detailed study of the type collection of P. insidiosus. Based on our results, we recognize five species in this group: P. insidiosus [...] Read more.
We studied the taxonomy of Pluteus insidiosus and similar species using morphological and molecular (nrITS, TEF1-α) data, including a detailed study of the type collection of P. insidiosus. Based on our results, we recognize five species in this group: P. insidiosus sensu stricto and four other taxa: P. assimilatus; P. farensis; P. flavostipitatus; and P. pseudoinsidiosus; described here as new. All these taxa are distinct from each other based on molecular data, but some of them are semi-cryptic based on morphology and co-occur in the Palaearctic region. An additional molecular lineage, phylogenetically separates from the P. insidiosus complex, but with many morphological similarities, was recognized in the molecular phylogenies. Based on the revision of available type collections, the name Pluteus reisneri Velen., was adopted for this Clade. Pluteus reisneri was validly published in 1921, but it has barely been used since its original description. A modern epitype, with molecular data, was selected for P. reisneri. Full article
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25 pages, 5044 KiB  
Article
The Taxon Hypothesis Paradigm—On the Unambiguous Detection and Communication of Taxa
by Urmas Kõljalg, Henrik R. Nilsson, Dmitry Schigel, Leho Tedersoo, Karl-Henrik Larsson, Tom W. May, Andy F. S. Taylor, Thomas Stjernegaard Jeppesen, Tobias Guldberg Frøslev, Björn D. Lindahl, Kadri Põldmaa, Irja Saar, Ave Suija, Anton Savchenko, Iryna Yatsiuk, Kristjan Adojaan, Filipp Ivanov, Timo Piirmann, Raivo Pöhönen, Allan Zirk and Kessy Abarenkovadd Show full author list remove Hide full author list
Microorganisms 2020, 8(12), 1910; https://doi.org/10.3390/microorganisms8121910 - 30 Nov 2020
Cited by 179 | Viewed by 8882
Abstract
Here, we describe the taxon hypothesis (TH) paradigm, which covers the construction, identification, and communication of taxa as datasets. Defining taxa as datasets of individuals and their traits will make taxon identification and most importantly communication of taxa precise and reproducible. This will [...] Read more.
Here, we describe the taxon hypothesis (TH) paradigm, which covers the construction, identification, and communication of taxa as datasets. Defining taxa as datasets of individuals and their traits will make taxon identification and most importantly communication of taxa precise and reproducible. This will allow datasets with standardized and atomized traits to be used digitally in identification pipelines and communicated through persistent identifiers. Such datasets are particularly useful in the context of formally undescribed or even physically undiscovered species if data such as sequences from samples of environmental DNA (eDNA) are available. Implementing the TH paradigm will to some extent remove the impediment to hastily discover and formally describe all extant species in that the TH paradigm allows discovery and communication of new species and other taxa also in the absence of formal descriptions. The TH datasets can be connected to a taxonomic backbone providing access to the vast information associated with the tree of life. In parallel to the description of the TH paradigm, we demonstrate how it is implemented in the UNITE digital taxon communication system. UNITE TH datasets include rich data on individuals and their rDNA ITS sequences. These datasets are equipped with digital object identifiers (DOI) that serve to fix their identity in our communication. All datasets are also connected to a GBIF taxonomic backbone. Researchers processing their eDNA samples using UNITE datasets will, thus, be able to publish their findings as taxon occurrences in the GBIF data portal. UNITE species hypothesis (species level THs) datasets are increasingly utilized in taxon identification pipelines and even formally undescribed species can be identified and communicated by using UNITE. The TH paradigm seeks to achieve unambiguous, unique, and traceable communication of taxa and their properties at any level of the tree of life. It offers a rapid way to discover and communicate undescribed species in identification pipelines and data portals before they are lost to the sixth mass extinction. Full article
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