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Authors = David Engelmann ORCID = 0000-0002-6715-806X

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17 pages, 2956 KiB  
Article
Multi-Omics Analysis Unravels the Impact of Stool Sample Logistics on Metabolites and Microbial Composition
by Jannike L. Krause, Beatrice Engelmann, David J. D. Lallinger, Ulrike Rolle-Kampczyk, Martin von Bergen and Hyun-Dong Chang
Microorganisms 2024, 12(10), 1998; https://doi.org/10.3390/microorganisms12101998 - 30 Sep 2024
Viewed by 1415
Abstract
Human health and the human microbiome are inevitably intertwined, increasing their relevance in clinical research. However, the collection, transportation and storage of faecal samples may introduce bias due to methodological differences, especially since postal shipping is a common practise in large-scale clinical cohort [...] Read more.
Human health and the human microbiome are inevitably intertwined, increasing their relevance in clinical research. However, the collection, transportation and storage of faecal samples may introduce bias due to methodological differences, especially since postal shipping is a common practise in large-scale clinical cohort studies. Using four different Omics layer, we determined the structural (16S rRNA sequencing, cytometric microbiota profiling) and functional integrity (SCFAs, global metabolome) of the microbiota in relation to different easy-to-handle conditions. These conditions were storage at −20 °C, −20 °C as glycerol stock, 4 °C and room temperature with and without oxygen exposure for a maximum of one week. Storage time affected the microbiota on all Omics levels. However, the magnitude was donor-dependent, highlighting the need for purpose-optimized sample collection in clinical multi-donor studies. The effects of oxygen exposure were negligible for all analyses. At ambient temperature, SCFA and compositional profiles were stable for 24 h and 48 h, respectively, while at 4 °C, SCFA profiles were maintained for 48 h. The global metabolome was highly susceptible, already changing at 24 h in non-frozen conditions. Thus, faecal microbiota was best preserved on all levels when transported as a native sample frozen within 24 h, leading to the least biased outcomes in the analysis. We conclude that the immediate freezing of native stool samples for transportation to the lab is best suited for planned multi-Omics analyses that include metabolomics to extend standard sequencing approaches. Full article
(This article belongs to the Special Issue Effects of Gut Microbiota on Human Health and Disease)
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40 pages, 13817 KiB  
Article
Near-Wall Flow in Turbomachinery Cascades—Results of a German Collaborative Project
by David Engelmann, Martin Sinkwitz, Francesca di Mare, Björn Koppe, Ronald Mailach, Jordi Ventosa-Molina, Jochen Fröhlich, Tobias Schubert and Reinhard Niehuis
Int. J. Turbomach. Propuls. Power 2021, 6(2), 9; https://doi.org/10.3390/ijtpp6020009 - 8 May 2021
Cited by 10 | Viewed by 6440
Abstract
This article provides a summarizing account of the results obtained in the current collaborative work of four research institutes concerning near-wall flow in turbomachinery. Specific questions regarding the influences of boundary layer development on blades and endwalls as well as loss mechanisms due [...] Read more.
This article provides a summarizing account of the results obtained in the current collaborative work of four research institutes concerning near-wall flow in turbomachinery. Specific questions regarding the influences of boundary layer development on blades and endwalls as well as loss mechanisms due to secondary flow are investigated. These address skewness, periodical distortion, wake interaction and heat transfer, among others. Several test rigs with modifiable configurations are used for the experimental investigations including an axial low speed compressor, an axial high-speed wind tunnel, and an axial low-speed turbine. Approved stationary and time resolving measurements techniques are applied in combination with custom hot-film sensor-arrays. The experiments are complemented by URANS simulations, and one group focusses on turbulence-resolving simulations to elucidate the specific impact of rotation. Juxtaposing and interlacing their results the four groups provide a broad picture of the underlying phenomena, ranging from compressors to turbines, from isothermal to non-adiabatic, and from incompressible to compressible flows. Full article
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18 pages, 3621 KiB  
Article
Cardiomyocyte Transplantation after Myocardial Infarction Alters the Immune Response in the Heart
by Praveen Vasudevan, Markus Wolfien, Heiko Lemcke, Cajetan Immanuel Lang, Anna Skorska, Ralf Gaebel, Dirk Koczan, Tobias Lindner, Robby Engelmann, Brigitte Vollmar, Bernd Joachim Krause, Olaf Wolkenhauer, Hermann Lang, Gustav Steinhoff and Robert David
Cells 2020, 9(8), 1825; https://doi.org/10.3390/cells9081825 - 3 Aug 2020
Cited by 12 | Viewed by 4866
Abstract
We investigated the influence of syngeneic cardiomyocyte transplantation after myocardial infarction (MI) on the immune response and cardiac function. Methods and Results: We show for the first time that the immune response is altered as a result of syngeneic neonatal cardiomyocyte transplantation after [...] Read more.
We investigated the influence of syngeneic cardiomyocyte transplantation after myocardial infarction (MI) on the immune response and cardiac function. Methods and Results: We show for the first time that the immune response is altered as a result of syngeneic neonatal cardiomyocyte transplantation after MI leading to improved cardiac pump function as observed by magnetic resonance imaging in C57BL/6J mice. Interestingly, there was no improvement in the capillary density as well as infarct area as observed by CD31 and Sirius Red staining, respectively. Flow cytometric analysis revealed a significantly different response of monocyte-derived macrophages and regulatory T cells after cell transplantation. Interestingly, the inhibition of monocyte infiltration accompanied by cardiomyocyte transplantation diminished the positive effect of cell transplantation alone. The number of CD68+ macrophages in the remote area of the heart observed after four weeks was also different between the groups. Transcriptome analysis showed several changes in the gene expression involving circadian regulation, mitochondrial metabolism and immune responses after cardiomyocyte transplantation. Conclusion: Our work shows that cardiomyocyte transplantation alters the immune response after myocardial infarction with the recruited monocytes playing a role in the beneficial effect of cell transplantation. It also paves the way for further optimization of the efficacy of cardiomyocyte transplantation and their successful translation in the clinic. Full article
(This article belongs to the Special Issue Stem Cell-Immune Function and Cardiac Regeneration)
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