pH Effects on the Conformations of Galacturonan in Solution: Conformational Transition and Loosening, Extension and Stiffness †
Abstract
:1. Introduction
1.1. Conformational Transitions: Helices and Coils
1.2. The Loose Helix
1.3. The Case of Galacturonan
1.4. Experimental Approaches to the Conformational Transition of Galacturonan
1.5. The Coupling of the Conformational Changes of Galacturonan
1.6. Specific Effects of Ions on the Conformation of Galacturonan
1.7. Hydration of Galacturonan
2. The Charge-Induced Conformational Transition of Galacturonan
2.1. Viscometric and Potentiometric Data
2.2. Isothermal Micro-Calorimetric Data in Aqueous NaClO4
2.3. Decoupling of the Conformational Changes
- The experimental transition () thermodynamic changes (, with = , , ) are supposed to result from the additive contribution of the inter-conformational transition term (31 → 21) and the loosening term (loosen.): + );
- In the ranges αi → α2 and α3 → αf (being αi = α1), the measured effect stems from the loosening. terms only: and . Moreover, no other excess term being detected beyond αf, the final condition (αf, R) can be substituted by (α = 1, R). For the case in “salt”, R = 10;
- To evaluate the loosening contribution in the transition interval α2 → α3, two methods have been devised, which are described in Supplementary paragraph 2. Briefly, they both assume that reflects the trends before α2 and beyond α3. The results are encouragingly similar, allowing for the trivial estimation of as the sum of the three contributions in the three sequential intervals of α. The results have been reported in block a. of Table 2;
- The terms have then been evaluated as the difference between and (see block b. of Table 2). The terms are assumed to be independent of α, as usual in calculating the (non-electrostatic) thermodynamic properties of the conformational transition when there is no—or a negligible—variation in charge density values between the initial and final states. This holds in the present case, where the difference in charge density between the 31 and the 21 fully-charged conformations is as low as 0.46% at full dissociation (as already mentioned in Section 1.1), which reduces to 0.16% at α2 and to 0.32% at α3. Operationally, the electrostatic terms are fully taken care of by the and baselines;
- The total excess changes from α1 to α = 1 () are then the bare sum of the two previous sets (see block c. of Table 2).
2.4. Isothermal Micro-Calorimetric Data in Salt-Free Aqueous Solution
2.5. Enthalpy Changes of Dilution: Galacturonan in Water
2.6. On the Peculiar Behavior of the Dependence of the Chiro-Optical Properties of Galacturonan in Water
2.7. The Unique Interplay of Stiffening and Loosening of the 31 Conformation Induced by Charging: The Progress of the Conformational Transition
2.8. Opposing Enthalpic Effects upon Charging the 31 Helix
3. The Temperature-Induced Conformational Transition of Galacturonan
3.1. Enthalpy Changes and Melting Temperatures from DSC Data
- The enthalpy change accompanying the “melting” of the associated structures. The presence of contacts between chains (association), which is a prerequisite of gel formation in LMP, was demonstrated by light-scattering experiments [38]. It is quite reasonable to suppose that the junctions are held together thanks to hydrophobic (van der Waals) interactions between the COOCH3 groups of facing chain stretches (with a correlated enthalpy change in association, ). Their melting brings about a negative (exothermic) value of , , with the opposite process being endothermic: “The formation of the hydrophobic bond is endothermic at low temperatures” [13] ( = ; separ. stands for “(chain) separation”, having restricted the word “dissociation” to the ionization process of galacturonic acid). From the experimental standpoint, negative (exothermic) values of have been observed in several associated systems held together by hydrophobic interactions [56,58,73]. In experiments of melting, like in the DSC heating experiments, one should then expect that the experimental enthalpy of melting—albeit being endothermic due to conformational transition, see points 2. and 3.—becomes increasingly less endothermic upon increasing polymer concentration, Cp. This increasing exothermic contribution stems from the obvious assumption that association if favored by an increase in Cp. Of course, in principle, other interchain interactions might also be present, like interchain hydrogen bonds. In this case, however, breaking such bonds would bring about an endothermic enthalpy change, indistinguishable from those described hereafter in 2. and 3. and, more important, it would add to those, thereby increasing the net endothermic effect;
- The enthalpy change accompanying the conformational transition from the 31 to the 21 helical symmetry, . This effect is endothermic and, for the 100% change in conformation, it coincides with the value of ( = +0.59 kcal·mole r.u.−1), reported in Table 2 for the “salt” case from ITμC experiments. Should the final 21 conformation be only partially present in the initial state, then the extent of this effect would be equal to , where is the fraction of the polymer in the 31 conformation, trivially being + = 1;
- The enthalpy change accompanying the loss of order (“loosening”) of either regular conformation that accompanies the progressive increase in temperature, . This effect is endothermic (as very well known for the full order → disorder transitions of proteins and nucleic acids) and it coincides with the entity called in Table 2; its value can vary depending on the given set of initial and final states;
- The sum of and of . can be operationally identified with , i.e., the enthalpy changes of the two processes pertaining to the transition of the isolated chain, corresponding the processes whose thermodynamic quantities have been reported in Table 2. On the other side, all terms contributing to chain–chain dissociation are collectively expressed by .
3.2. Insights into Conformational Changes from Data as a Function of Temperature
3.3. On the Difference between the Disordered Conformations of Pectin Brought about by Charging or Temperature
3.4. Molecular Aspects of the Acid–Gel Formation of LMP
- The 31 conformation is required to produce strong gels in very acidic conditions;
- “Even in the absence of Ca2+ and above pH 3.5 LMP associates spontaneously and forms weak gels at sufficiently high concentration that can, however, be easily broken by shear” [74]. This is documented by the values of the (−slope) function, which at pH = 3.5 (within the conformational transition range) show a value as large as 0.4. Even at the last point of the parabolic trend (i.e., at pH 5.39) the value of the (−slope) function is 0.17, pointing to a clearly viscoelastic solution (see Figure 14 and Figure 15). Interestingly, “This association is favored by increasing the temperature” [74], i.e., this is accompanied by an endothermic enthalpy change, exactly corresponding to the presently determined > 0 (see Section 3.1);
- The parabolic rise of the function (−slope) upon decreasing pH is even steeper below about pH = 3.0 (at α2), at which the 31 conformation is at its maximum tightness and in its most extended conformation (see the above discussion in Section 2.6 and Section 2.7 and in the following Section 6 on viscosity). For α < α2 (i.e., pH < 3.0), the chain gets progressively more disordered. This indicates that the increasing gel-like character—as shown by the increase in the function (−slope)—is not due to an increase in contacts between stretches in the (31) ordered conformation. Rather, the major players,—effective in producing the rheologically effective interchain links,—are as follows: (1) the polyelectrolyte charge density, which must be reduced to a negligible amount by reduction in pH; (2) the presence of attractive van der Waals (hydrophobic) interactions between COOCH3 groups on facing—almost uncharged—chains;
- For pH values lower than 3.0, the 31 conformation gets progressively looser upon decreasing pH; still, the nice parabolic trend must be viewed upon as intimately linked to a persisting fraction of tightness. Should the system proceed along that trend, the value of (−slope) = 1.0 would have been reached already at the (higher) pH value of 1.69. On the contrary, the pH value of the intercept at = 1.0 for the linear trend of the two lowest values pH data points is 1.42. It is possible to hypothesize two opposing mechanisms of gel–junction formation. The former one could be due to the formation of H-bonds between locally regular sequences of facing repeating units; the latter one could be due to interactions between the non-regularly distributed methyl-ester groups on different chains. The regularity required by the first mechanism implies the ordering and stiffening of the 31 conformation, which, moreover, would be favored by a limited increase in fractional charge on the COOH groups, contrary to the observed effect. Moreover, as addressed in Section 3.1, breaking such interchain H-bonds (if present in significant amount) would imply a major endothermic effect, at variance with the opposite experimental findings (see Figure 12a). At variance, the second mechanism benefits from an increased flexibility to favor the geometrically undefined van der Waals contacts between opposing chains—the less charged the better—with a substantial gain of configurational entropy. The observed break of the parabolic trend of the function upon decreasing pH suggests a progressive reduction in any H-bond based association mechanism (if ever present) in favor of that based on associative hydrophobic (van der Waals) interactions at lower residual fractional charging;
- That the conformation of LMP at pH ≤ 2.0 is largely disordered is supported by the intercept of the blue dashed line with the line of −slope = 0.0 (Newtonian liquid) at pH = 6.05. It means that such disordered LMP conformation, if it could be ideally kept up to neutral conditions, would behave as a pure dissipative liquid, without traces of elasticity that, on the contrary, characterize the “real” LMP solutions at a neutrality whose viscoelastic behavior (−slope = 0.17) is rooted in the—albeit “loose”—21 helical conformation.
4. Lyotropic Effect of Perchlorate on the Conformations of Galacturonan
4.1. Enthalpy Changes of Mixing with Salt
4.2. On the Difference between Infinite Ionic Strength and Infinite (Specific) Salt Concentration: Hofmeister and Lyotropic Effects
5. Whole-Chain Properties of Galacturonan
5.1. Capillary Viscosity Data
5.2. “Intrinsic” Chain Expansion and Stiffness of Pectic Acid
6. Conclusions
- Increasing the fraction of charging (as degree of dissociation, α) from 0.0 to 1.0—at 25 °C—brings about the following:
- An expansion of the 31 helical conformation—tightened by the formation of intra-molecular H-bond in H2 → O’6—with the formation of rheologically significant cooperative stretches up to a critical value of charge density, ξc (ξc = αc·ξ0);
- A conformational transition from the stiffer 31 to the more flexible 21 helical conformation; the α width of the transition is constant (δαtr = 0.38), i.e., independent of the ionic strength of the medium;
- An ever increasing—with α—loosening of either helical conformation;
- The 31 → 21 transition can also be achieved by heating LMP in water (namely, from 10 °C to 85 °C). The pH profile of the heat effects (by DSC) indicated that the condition pH = 3.0 produces the maximum value, paralleling the pH profile of the optical activity. It corresponds to the maximum tightening by the formation of intra-molecular H-bond;
- Both negative charging (by COOH dissociation) and temperature are effective in disordering (“loosening”) galacturonan helical conformations. However, the latter variable is by far more effective in doing so. Moreover, NaClO4, in due concentration, can stabilize the loosened conformation. This has been shown as the failure of an increase in the ionic strength to completely revert the loosening provoked by the increase in charge density through electrostatic shielding. Such effect is the first reported evidence of the impact of the chaotropic anion perchlorate on galacturonan (Hofmeister effect);
- For pH values ≤ 2.0, a massive association of LMP builds up, which is mostly driven by hydrophobic (van der Waals) interactions. A concerted action of highly reduced charge density, increased conformational loosening and interchain association produce interchain junctions at the root of acid–gel formation [32];
- The extrapolation of the reduced viscosity data to infinite ionic strength confirmed that the expansion of the 31 and the 21 helical conformations at α = 0.0 and 1.0, respectively, was the same (to within 1%) [31]; on the contrary, the response to ionic strength change showed a 15-fold increase in the 31 → 21 transformation, pointing to a very large accompanying increase in flexibility;
- The viscosity data confirmed that the three-fold helical conformation undergoes progressive tightening and expansion thanks to inter-residue H-bond formation up to a critical value of α, αc, beyond which a breakdown of the cooperative helix starts to produce the much more flexible two-fold helical conformation.
Supplementary Materials
- Intermediate values of at the intermediate values of α, from α1 to α = 1.0
- Calculation of the “loosen” contribution in the conformational transition interval
- More on the Thermodynamics of Association
- On the possible sources of deviation from theory of the enthalpy of mixing data (including Figure S1)
- More on Hofmeister and Lyotropic Effects in Polysaccharide Systems
- On the Coupling of the Polyelectrolyte Aspects with the Lyotropic Ones (including Figure S2)
- On the Viscometric behavior of Galacturonan as Compared to that of a “Normal” Weak Polyacid (including Figure S3)
Funding
Institutional Review Board Statement
Data Availability Statement
Conflicts of Interest
References
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Source | Transition | |||
---|---|---|---|---|
kcal·mol−1 | cal·mol−1·K−1 | kcal·mol−1 | ||
Reference [29] | αi → αf, s a | +0.70 ± 0.10 b | +2.2 ± 0.3 b | +0.04 ± 0.13 b |
αi → αf, w a | +0.50 ± 0.10 b | +1.6 ± 0.3 b | +0.02 ± 0.13 b | |
This work | αi → αf, s a | +0.727 ± 0.05 c | +2.27 ± 0.01 c | +0.05 ± 0.05 d |
αi → αf, w a | +0.563 ± 0.05 c | +1.62 ± 0.01 c | +0.08 ± 0.05 d |
a. | |||||||
condition | Cp equiv.·L−1 | Cs M | I M | kcal⋅mole r.u.−1 | cal⋅mole r.u.−1·K−1 | kcal⋅mole r.u.−1 | Tm K |
T = 25 °C, α = 1 | |||||||
salt (R = 10) | 0.005 | 0.05 | 0.05152 | 0.13 ± 0.00 | 0.44 ± 0.01 | 0.001 ± 0.001 | 300 ± 27 |
water (R = 0) | 0.0064 | 0 | 0.00194 | 0.10 ± 0.01 | 0.19 ± 0.04 | 0.04 ± 0.00 | 511 ± 123 |
b. | |||||||
condition | Cp equiv.·L−1 | Cs M | I M | kcal⋅mole r.u.−1 | cal⋅mole r.u.−1·K−1 | kcal⋅mole r.u.−1 | Tm K |
T = 25 °C, α = 1 | |||||||
salt (R = 10) | 0.005 | 0.05 | 0.05152 | 0.59 ± 0.00 | 1.84 ± 0.01 | 0.05 ± 0.00 | 324 ± 2 |
water (R = 0) | 0.0064 | 0 | 0.00194 | 0.46 ± 0.01 | 1.43 ± 0.04 | 0.04 ± 0.02 | 324 ± 12 |
c. | |||||||
condition | Cp equiv.·L−1 | Cs M | I M | kcal⋅mole r.u.−1 | cal⋅mole r.u.−1·K−1 | kcal⋅mole r.u.−1 | Tm K |
T = 25 °C, α = 1 | |||||||
salt (R = 10) | 0.005 | 0.05 | 0.05152 | 0.73 ± 0.00 | 2.28 ± 0.01 | 0.05 ± 0.00 | 319 ± 2 |
water (R = 0) | 0.0064 | 0 | 0.00194 | 0.56 ± 0.02 | 1.63 ± 0.06 | 0.08 ± 0.02 | 346 ± 16 |
Source | Condition | State | ||||
---|---|---|---|---|---|---|
kcal·mole r.u.−1 | ||||||
this work | water a | initial | final | b | c | d |
α = 1, Cs = 0, Cp = ∞ | α = 1, Cs = 0, Cp = 0 | 0.13 ± 0.06 | 0.12 ± 0.06 | 0.13 ± 0.09 |
Isothermal (25 °C), pH-Induced Transition. Final State: α = 1.0 | Iso—pH (3.0), T-Induced Transition. Final State: T = 85 °C | RATIO | ||||
---|---|---|---|---|---|---|
Δ[ϑ]215 (deg·cm2·decimole−1) | 1. | Δ[α]436 (100 deg·dm−1·(% wt)−1) | 2. | 2./1. | ||
A. 31 → 21 | 1080 a | A. 31 → 21 | 15.63 c | |||
B. loosening | 1449 b | B. loosening | 50.0 d | |||
Chiro-optical ratio, B./A. | 1.34 | Chiro-optical ratio, B./A. | 3.20 | 2.4 | ||
(kcal·mole r.u.−1) | 1. | (kcal·mole r.u.−1) | 2. | 2./1. | ||
C. 31 → 21 | 0.59 e | C. 31 → 21 | 0.59 e | |||
D. loosening | 0.13 f | D. loosening | 0.28 g | |||
Calorimetric ratio, D./C. | 0.22 | Calorimetric ratio, D./C. | 0.46 | 2.1 | ||
(kcal·mole r.u.−1·K−1) | 1. | (kcal·mole r.u.−1·K−1) | 2. | 2./1. | ||
E. 31 → 21 | 1.84 h | E. 31 → 21 | 1.84 h | |||
F. loosening | 0.44 i | F. loosening | 1.03 j | |||
Entropic ratio, F./E. | 0.24 | Entropic ratio, F./E. | 0.56 | 2.3 |
Source | Transition | |||
---|---|---|---|---|
kcal ·mole r.u.−1 | ||||
[75] | Cs = 0 → Cs = ∞, wa | +0.20 ± 0.01 | +0.33 ± 0.01 | −0.13 ± 0.01 |
[30] | Cs = 0.05 M → Cs = ∞, sc | +0.10 ± 0.01 | +0.12 ± 0.01 | −0.01 ± 0.01 |
a. | |||||
condition | state | ( = 0; “as if” α = 0) | |||
initial | final | kcal·mol−1 | |||
water a | α1, Cs = 0 (R = 0) | α = 1, RMAX (=0.8) | 0.10 ± 0.01 | 0.03 | 0.13 ± 0.01 |
salt b | α1, Cs = 0.05 M (R = 10) | α = 1, RMAX (=64) | 0.13 ± 0.00 | 0.06 | 0.19 ± 0.00 |
b. | |||||
α = 1 | c | * | † | c | |
A | B | A + B | |||
kcal·mol−1 | |||||
water a | 0.03 | −0.16 | 0.13 ± 0.01 * | 0.13 ± 0.09 † | −0.03 ± 0.02 e |
salt b | 0.06 | −0.07 | 0.19 ± 0.00 * | +0.12 ± 0.01 e | |
α = 1 | d | c,d | d | c,d | |
A | B | A + B | |||
cal·mol−1·K−1 | |||||
water a | 0.06 | −0.32 | 0.25 | −0.06 ± 0.05 e | |
salt b | 0.20 | −0.24 | 0.64 | +0.40 ± 0.01 e |
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Paoletti, S.; Donati, I. pH Effects on the Conformations of Galacturonan in Solution: Conformational Transition and Loosening, Extension and Stiffness. Polysaccharides 2023, 4, 271-324. https://doi.org/10.3390/polysaccharides4030018
Paoletti S, Donati I. pH Effects on the Conformations of Galacturonan in Solution: Conformational Transition and Loosening, Extension and Stiffness. Polysaccharides. 2023; 4(3):271-324. https://doi.org/10.3390/polysaccharides4030018
Chicago/Turabian StylePaoletti, Sergio, and Ivan Donati. 2023. "pH Effects on the Conformations of Galacturonan in Solution: Conformational Transition and Loosening, Extension and Stiffness" Polysaccharides 4, no. 3: 271-324. https://doi.org/10.3390/polysaccharides4030018
APA StylePaoletti, S., & Donati, I. (2023). pH Effects on the Conformations of Galacturonan in Solution: Conformational Transition and Loosening, Extension and Stiffness. Polysaccharides, 4(3), 271-324. https://doi.org/10.3390/polysaccharides4030018