Prevalence and Antifungal Susceptibility of Clinically Relevant Candida Species, Identification of Candida auris and Kodamaea ohmeri in Bangladesh
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Design and Setting, Collection of Specimens
2.2. Culture and Identification of Candida spp.
2.3. Antifungal Susceptibility Testing
2.4. Sequence Analysis of the ERG11 Gene
2.5. Statistical Analysis
2.6. GenBank Accession Numbers
3. Results
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Conflicts of Interest
References
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Candida Species | Number of Isolates (% in All the Isolates) | Number of Isolates (% in Specimens) | ||
---|---|---|---|---|
HVS | Blood | Aural Swab | ||
C. albicans | 40 (36.7) | 34 (65.4) | 4 (10.3) | 2 (11.1) |
C. parapsilosis | 25 (22.9) | 4 (7.7) | 16 (41) | 5 (27.8) |
C. ciferrii | 12 (11) | 1 (1.9) | 9 (23) | 2 (11.1) |
C. tropicalis | 10 (9.2) | 5 (9.6) | 1 (2.6) | 4 (22.2) |
C. glabrata | 6 (5.5) | 5 (9.6) | 1 (2.6) | 0 |
C. rugosa | 4 (3.7) | 0 | 4 (10.3) | 0 |
C. famata | 3 (2.8) | 0 | 0 | 3 (16.7) |
C. auris | 3 (2.8) | 0 | 3 (7.7) | 0 |
K. ohmeri | 2 (1.8) | 0 | 0 | 2 (11.1) |
C. dubliniensis | 1 (0.9) | 1 (1.9) | 0 | 0 |
C. krusei | 1 (0.9) | 1 (1.9) | 0 | 0 |
C. kefyr | 1 (0.9) | 1 (1.9) | 0 | 0 |
C. lusitaniae | 1 (0.9) | 0 | 1 (2.6) | 0 |
Total | 109 (100) | 52 (100) | 39 (100) | 18 (100) |
Candida Species | Number of Isolates | Numbr of Isolates Showing Susceptibility * (% in C. albicans/NAC) | ||
---|---|---|---|---|
S | SDD | R | ||
C. albicans | 40 | 26 (65) | 10 (25) | 4 (10) |
C. parapsilosis | 25 | 17 | 5 | 3 |
C. tropicalis | 10 | 5 | 4 | 1 |
C. glabrata | 6 | 0 | 4 | 2 |
C. ciferrii | 12 | 2 | 2 | 8 |
C. rugosa | 4 | 0 | 4 | 0 |
C. auris | 3 | 0 | 0 | 3 |
C. famata | 3 | 3 | 0 | 0 |
C. dubliniensis | 1 | 1 | 0 | 0 |
C. krusei | 1 | 0 | 0 | 1 |
C. kefyr | 1 | 0 | 0 | 1 |
C. lusitaniae | 1 | 1 | 0 | 0 |
K. ohmeri | 2 | 0 | 0 | 2 |
NAC total | 69 | 30 (43) | 19 (28) | 20 (29) ** |
Specimen | Candida species | Number of Isolates | Number of Isolates (%) Showing Susceptibility to Antifungals | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Fluconazole | Itraconazole | Voriconazole | Amphotericin B | |||||||||
S | SDD | R | S | SDD | R | S | R | S | R | |||
Blood | C. albicans | 4 | 3 | 0 | 1 | 4 | 0 | 0 | 4 | 0 | 4 | 0 |
C. parapsilosis | 16 | 13 | 0 | 3 | 9 | 4 | 3 | 16 | 0 | 16 | 0 | |
C. ciferrii | 9 | 3 | 0 | 6 | 3 | 0 | 6 | 8 | 1 | 4 | 5 | |
C. rugosa | 4 | 4 | 0 | 0 | 4 | 0 | 0 | 4 | 0 | 4 | 0 | |
C. auris | 3 | 0 | 0 | 3 | 0 | 0 | 3 | 2 | 1 | 0 | 3 | |
C. glabrata | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
C. lusitaniae | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | |
C. tropicalis | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
Total | 39 | 26 (67%) | 0 | 13 (33%) | 23 (59%) | 4 (10%) | 12 (31%) | 37 (95%) | 2 (5%) | 30 (77%) | 9 (23%) | |
HVS | C. albicans | 34 | 31 | 0 | 3 | 23 | 9 | 2 | 29 | 5 | 25 | 9 |
C. glabrata | 5 | 2 | 1 | 2 | 2 | 1 | 2 | 5 | 0 | 3 | 2 | |
C. tropicalis | 5 | 4 | 1 | 0 | 4 | 1 | 0 | 4 | 1 | 4 | 1 | |
C. parapsilosis | 4 | 4 | 0 | 0 | 4 | 0 | 0 | 4 | 0 | 3 | 1 | |
C. ciferrii | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | |
C. dubliniensis | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
C. krusei | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | |
C. kefyr | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | |
Total | 52 | 43 (82%) | 4 (8%) | 5 (10%) | 34 (65%) | 13 (25%) | 5 (10%) | 45 (87%) | 7 (13%) | 36 (69%) | 16 (31%) | |
Fluconazole | Itraconazole | Nystatin | Clotrimazole | |||||||||
S | SDD | R | S | SDD | R | S | R | S | R | |||
Aural Swab | C. albicans | 2 | 2 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 2 | 0 |
C. parapsilosis | 5 | 5 | 0 | 0 | 5 | 0 | 0 | 3 | 2 | 3 | 2 | |
C. tropicalis | 4 | 4 | 0 | 0 | 2 | 1 | 1 | 3 | 1 | 2 | 2 | |
C. famata | 3 | 3 | 0 | 0 | 3 | 0 | 0 | 2 | 1 | 2 | 1 | |
C. ciferrii | 2 | 1 | 0 | 1 | 1 | 0 | 1 | 2 | 0 | 1 | 1 | |
K. ohmeri | 2 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 2 | |
Total | 18 | 15 (83%) | 2 (11%) | 1 (6%) | 12 (67%) | 4 (22%) | 2 (11%) | 14 (78%) | 4 (22%) | 10 (56%) | 8 (44%) |
Infection Type/Patient Group | Risk Factors | N (%) |
---|---|---|
Candidemia, neonates (n = 33) | Prolonged broad spectrum antibiotic | 33 (100) * |
Total parenteral nutrition | 22 (67) * | |
Lower uterine cesarean section | 20 (61) * | |
Low birth weight | 17 (52) * | |
Nasogastric feeding | 17 (52) * | |
O2 therapy | 17 (52) * | |
Preterm birth | 17 (52) * | |
Neonatal Jaundice | 14 (42) * | |
History of septicemia | 12 (36) * | |
Prolonged rupture of membrane | 6 (18) * | |
Gestational diabetes mellitus | 2 (6) | |
Meconium stained liquor | 2 (6) | |
Candidemia, pediatric and elderly (n = 6) | Prolonged broad spectrum antibiotic | 6 (100) * |
Sepsis | 4 (67) * | |
History of taking chemotherapy | 3 (50) * | |
Malignancy | 3 (50) * | |
ICU stay (>14 days) | 2 (33) * | |
Vulvovaginal candidiasis (n = 52) | Oral contraceptive pill | 28 (54) * |
Recent broad spectrum antibiotic | 20 (39) * | |
Diabetes mellitus | 16 (31) * | |
Pregnancy | 10 (19) * | |
Otomycosis (n = 18) | Habitual cleaning | 12 (67) * |
Antibiotic or steroid drop use | 10 (56) * | |
Oil instillation in ear | 8 (44) * | |
Diabetes mellitus | 6 (33) * | |
Trauma | 2 (11) |
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Sathi, F.A.; Paul, S.K.; Ahmed, S.; Alam, M.M.; Nasreen, S.A.; Haque, N.; Islam, A.; Nila, S.S.; Afrin, S.Z.; Aung, M.S.; et al. Prevalence and Antifungal Susceptibility of Clinically Relevant Candida Species, Identification of Candida auris and Kodamaea ohmeri in Bangladesh. Trop. Med. Infect. Dis. 2022, 7, 211. https://doi.org/10.3390/tropicalmed7090211
Sathi FA, Paul SK, Ahmed S, Alam MM, Nasreen SA, Haque N, Islam A, Nila SS, Afrin SZ, Aung MS, et al. Prevalence and Antifungal Susceptibility of Clinically Relevant Candida Species, Identification of Candida auris and Kodamaea ohmeri in Bangladesh. Tropical Medicine and Infectious Disease. 2022; 7(9):211. https://doi.org/10.3390/tropicalmed7090211
Chicago/Turabian StyleSathi, Fardousi Akter, Shyamal Kumar Paul, Salma Ahmed, Mohammad Monirul Alam, Syeda Anjuman Nasreen, Nazia Haque, Arup Islam, Sultana Shabnam Nila, Sultana Zahura Afrin, Meiji Soe Aung, and et al. 2022. "Prevalence and Antifungal Susceptibility of Clinically Relevant Candida Species, Identification of Candida auris and Kodamaea ohmeri in Bangladesh" Tropical Medicine and Infectious Disease 7, no. 9: 211. https://doi.org/10.3390/tropicalmed7090211
APA StyleSathi, F. A., Paul, S. K., Ahmed, S., Alam, M. M., Nasreen, S. A., Haque, N., Islam, A., Nila, S. S., Afrin, S. Z., Aung, M. S., & Kobayashi, N. (2022). Prevalence and Antifungal Susceptibility of Clinically Relevant Candida Species, Identification of Candida auris and Kodamaea ohmeri in Bangladesh. Tropical Medicine and Infectious Disease, 7(9), 211. https://doi.org/10.3390/tropicalmed7090211