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Review

A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis

1
College of Medicine Cincinnati, University of Cincinnati, Cincinnati, OH 45267, USA
2
School of Computing and Analytics, Northern Kentucky University, Highland Heights, KY 41099, USA
3
Department of Biostatistics, Health Informatics and Data Sciences, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA
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Division of Biostatistics and Bioinformatics, Department of Environmental and Public Health Sciences, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA
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Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA
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Institute of Engineering and Technology, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University, 87-100 Torun, Poland
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Department of Computer Science, University of Cincinnati College of Engineering and Applied Sciences, Cincinnati, OH 45219, USA
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Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA
*
Author to whom correspondence should be addressed.
Methods Protoc. 2026, 9(2), 33; https://doi.org/10.3390/mps9020033 (registering DOI)
Submission received: 29 December 2025 / Revised: 13 February 2026 / Accepted: 21 February 2026 / Published: 28 February 2026
(This article belongs to the Section Biomedical Sciences and Physiology)

Abstract

This review evaluates the emerging paradigm of multi-agent systems (MASs) for biomedical and clinical data analysis, focusing on their ability to overcome the reasoning and reliability limitations of standalone large language models (LLMs). We synthesize findings from recent architectural frameworks, specifically LangGraph, CrewAI, and the Model Context Protocol (MCP), to examine how specialized agent teams divide labor, utilize precision tools, and cross-verify outputs. We find that MAS architectures yield significant performance gains in various domains: recent implementations improved oncology decision-making accuracy from 30.3% to 87.2% and reached a peak of 93.2% accuracy on USMLE-style benchmarks through simulated clinical evolution. In clinical trial matching, multi-agent frameworks achieved 87.3% accuracy and enhanced clinician screening efficiency by 42.6% (p < 0.001). However, we also highlight critical operational challenges, including an unreliability tax of 15–50× higher token consumption compared to standalone models and the risk of cascading errors where initial hallucinations are amplified across the agent collective. We conclude that while MAS enables a shift toward collaborative intelligence in biomedicine, its clinical and research adoption requires the development of deterministic orchestration and rigorous cost-utility frameworks to ensure safety and expert-centered oversight.
Keywords: multi-agent systems; large language models (LLMs); biomedical AI; clinical decision support; orchestration frameworks; autonomous agents; AI safety; collaborative intelligence multi-agent systems; large language models (LLMs); biomedical AI; clinical decision support; orchestration frameworks; autonomous agents; AI safety; collaborative intelligence

Share and Cite

MDPI and ACS Style

Spieser, J.; Balapour, A.; Meller, J.; Patra, K.C.; Shamsaei, B. A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis. Methods Protoc. 2026, 9, 33. https://doi.org/10.3390/mps9020033

AMA Style

Spieser J, Balapour A, Meller J, Patra KC, Shamsaei B. A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis. Methods and Protocols. 2026; 9(2):33. https://doi.org/10.3390/mps9020033

Chicago/Turabian Style

Spieser, Jackson, Ali Balapour, Jarek Meller, Krushna C. Patra, and Behrouz Shamsaei. 2026. "A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis" Methods and Protocols 9, no. 2: 33. https://doi.org/10.3390/mps9020033

APA Style

Spieser, J., Balapour, A., Meller, J., Patra, K. C., & Shamsaei, B. (2026). A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis. Methods and Protocols, 9(2), 33. https://doi.org/10.3390/mps9020033

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