Effects of Cover Crops on Soil Mesofauna in Horticultural Systems in Portugal
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Sites
2.2. Soil Sampling
2.3. Microarthropod Extraction
2.4. EMI Assignment and QBS-ar Index Calculation
2.5. Statistical Analysis
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AL | Alentejo Litoral test field |
| ca. | circa |
| cm | centimeter |
| EMI | Eco-Morphological Index |
| lm | lumen |
| m | meter |
| OE | Oeste test field |
| QBS-ar | Soil Biological Quality Index |
| RB | Ribatejo test fields (RB1–RB4) |
References
- Orgiazzi, A.; Singh, B.; Wall, D.; Barrios, E.; Kandeler, E.; Moreira, F.; De Deyn, G.; Chotte, J.; Six, J.; Hedlund, K.; et al. Global Soil Biodiversity Atlas; Tertre: Paris, France, 2016; pp. 1–176. [Google Scholar] [CrossRef]
- Menta, C.; Conti, F.D.; Pinto, S.; Bodini, A. Soil Biological Quality Index (QBS-Ar): 15 Years of Application at Global Scale. Ecol. Indic. 2018, 85, 773–780. [Google Scholar] [CrossRef]
- Solbrig, O. From Genes to Ecosystems: A Research Agenda for Biodiversity. In IUBS-SCOPE-UNESCO Workshop; Harvard Forest: Petersham, MA, USA, 1991; p. 124. [Google Scholar]
- Mace, G.M.; Norris, K.; Fitter, A.H. Biodiversity and Ecosystem Services: A Multilayered Relationship. Trends Ecol. Evol. 2012, 27, 19–26. [Google Scholar] [CrossRef] [PubMed]
- Maes, J.; Teller, A.; Erhard, M.; Murphy, P.; Paracchini, M.L.; Barredo, J.I.; Grizzetti, B.; Cardoso, A. Mapping and Assessment of Ecosystems and Their Services: Indicators for Ecosystem Assessments Under Action 5 of the EU Biodiversity Strategy to 2020; Publications Office of the European Union: Reims, Luxembourg, 2014; p. 81. [Google Scholar] [CrossRef]
- Tsiafouli, M.A.; Thébault, E.; Sgardelis, S.P.; de Ruiter, P.C.; van der Putten, W.H.; Birkhofer, K.; Hemerik, L.; de Vries, F.T.; Bardgett, R.D.; Brady, M.V.; et al. Intensive Agriculture Reduces Soil Biodiversity across Europe. Glob. Chang. Biol. 2015, 21, 973–985. [Google Scholar] [CrossRef] [PubMed]
- FAO (Ed.) Policy Support Guidelines for the Promotion of Sustainable Production Intensification and Ecosystem Services; Integrated Crop Management; Food and Agriculture Organization of the United Nations: Rome, Italy, 2013. [Google Scholar]
- EC Portugal. Agricultura e Desenvolvimento Rural—Comissão Europeia. Available online: https://agriculture.ec.europa.eu/cap-my-country/cap-strategic-plans/portugal_pt (accessed on 11 March 2026).
- Nunes, A. Sinopse do Grupo Operacional—Maissolo. Available online: https://maissolo.webnode.pt/ (accessed on 11 March 2026).
- Fareleira, P.; Castro, I.; Soares, R.; Matos, S.; Almeida, L.; Barradas, A.; Nunes, A.P. Culturas de Cobertura Para a Melhoria Das Propriedades Microbiológicas Do Solo Em Sistemas de Produção Hortícola Intensiva. Rev. Ciênc. Agrár. 2023, 45, 482–486. [Google Scholar] [CrossRef]
- Carvalho, M.; Serralheiro, R. A Sustentabilidade Dos Sistemas de Agricultura No Alentejo: Os Desafios Económicos e Ambientais. Available online: https://naturaemuseubiodiv.wordpress.com/2021/07/08/a-sustentabilidade-dos-sistemas-de-agricultura-no-alentejo-os-desafios-economicos-e-ambientais/ (accessed on 23 July 2024).
- Menta, C.; Remelli, S. Soil Health and Arthropods: From Complex System to Worthwhile Investigation. Insects 2020, 11, 54. [Google Scholar] [CrossRef] [PubMed]
- Culliney, T.W. Role of Arthropods in Maintaining Soil Fertility. Agriculture 2013, 3, 629–659. [Google Scholar] [CrossRef]
- Coleman, D.C.; Crossley, D.A.; Hendrix, P.F. Fundamentals of Soil Ecology; Elsevier Academic Press: Amsterdam, The Netherlands, 2004. [Google Scholar]
- Parisi, V.; Menta, C.; Gardi, C.; Jacomini, C.; Mozzanica, E. Microarthropod Communities as a Tool to Assess Soil Quality and Biodiversity: A New Approach in Italy. Agric. Ecosyst. Environ. 2005, 105, 323–333. [Google Scholar] [CrossRef]
- Menta, C.; Conti, F.D.; Pinto, S. Microarthropods Biodiversity in Natural, Seminatural and Cultivated Soils—QBS-Ar Approach. Appl. Soil Ecol. 2018, 123, 740–743. [Google Scholar] [CrossRef]
- Firbank, L.G.; Bertora, C.; Blankman, D.; Delle Vedove, G.; Frenzel, M.; Grignani, C.; Groner, E.; Kertész, M.; Krab, E.J.; Matteucci, G.; et al. Towards the Co-Ordination of Terrestrial Ecosystem Protocols across European Research Infrastructures. Ecol. Evol. 2017, 7, 3967–3975. [Google Scholar] [CrossRef] [PubMed]
- Dabney, S.M.; Delgado, J.A.; Reeves, D.W. Using Winter Cover Crops to Improve Soil and Water Quality. Commun. Soil Sci. Plant Anal. 2001, 32, 1221–1250. [Google Scholar] [CrossRef]
- Clark, A. Managing Cover Crops Profitably, 3rd ed.; DIANE Publishing Company: Darby, PA, USA, 2008. [Google Scholar]
- Koehler-Cole, K.; Elmore, R.W.; Blanco-Canqui, H.; Francis, C.A.; Shapiro, C.A.; Proctor, C.A.; Ruis, S.J.; Heeren, D.M.; Irmak, S.; Ferguson, R.B. Cover Crop Productivity and Subsequent Soybean Yield in the Western Corn Belt. Agron. J. 2020, 112, 2649–2663. [Google Scholar] [CrossRef]
- Biagetti, E.; Viegas, M.; Martella, A.; Franco, S.; Moreno Pires, S. Assessing the Environmental Sustainability of Portuguese Agriculture. Environ. Dev. 2025, 55, 101209. [Google Scholar] [CrossRef]
- Nunes, A. Sinopse Do Grupo Operacional MaisSolo; COTHN: Alcobaça, Portugal, 2018. [Google Scholar]
- IPMA Instituto Português Do Mar e Da Atmosfera. Climate Normals. Available online: https://www.ipma.pt/pt/oclima/normais.clima/1991-2020/#535 (accessed on 12 March 2026).
- D’Avino, L.; Bigiotti, G.; Vitali, F.; Tondini, E.; L’Abate, G.; Jacomini, C.; Cassi, F.; Menta, C.; QBS-Ar SISS Working Group. QBS-Ar and QBS-ar_BF Index Toolbox for Biodiversity Assessment of Microarthropods Community in Soil; Zenodo: Geneva, Switzerland, 2023. [Google Scholar] [CrossRef]
- Gallese, F.; Gismero-Rodriguez, L.; Govednik, A.; Giagnoni, L.; Lumini, E.; Suhadolc, M.; Vaccari, F.P.; Maienza, A. Soil Microarthropods as Tools for Monitoring Soil Quality: The QBS-Ar Index in Three European Agroecosystems. Agriculture 2025, 15, 89. [Google Scholar] [CrossRef]
- Tadesse, Z.; Belayneh, R.; Fireman, J.; Coll, M.; Shelef, O. Soil Microarthropod Assemblage under Various Vegetation Covers: A Bioindicator Approach in Agriculture. Appl. Soil Ecol. 2026, 218, 106746. [Google Scholar] [CrossRef]
- Menta, C. Agriculture Management and Soil Fauna Monitoring: The Case of Emilia-Romagna Region (Italy). Agric. Res. Technol. Open Access J. 2017, 4, 1–3. [Google Scholar] [CrossRef]
- Michail, I.; Pantazis, C.; Solomos, S.; Michailidis, M.; Molassiotis, A.; Gkisakis, V. Cover Crops for Carbon Mitigation and Biodiversity Enhancement: A Case Study of an Olive Grove in Messinia, Greece. Agriculture 2025, 15, 898. [Google Scholar] [CrossRef]
- Calderone, F.; Scavo, A.; Gresta, F.; Ferlito, F.; Dimauro, C.; Scordia, D. Cover Crops Promote Regulating and Supporting Ecosystem Services without Compromising Grape Yield in Temperate Vineyards. A Meta-Analysis. Agron. Sustain. Dev. 2025, 45, 70. [Google Scholar] [CrossRef]
- Rodríguez, M.T. Shymphyla y Pauropoda (Myriapoda) de Suelos de España. Ph.D. Thesis, Complutense University of Madrid, Madrid, Spain, 1992. [Google Scholar]
- Jeffery, S.; Gardi, C.; Jones, A.; Montanarella, L.; Marmo, L.; Miko, L.; Ritz, K.; Peres, G.; Römbke, J.; van der Putten, W.H. European Atlas of Soil Biodiversity; European Commission, Publications Office of the European Union: Luxembourg, 2010. [Google Scholar]
- Scheller, U.; Berg, M.; Jansen, M. Pauropoda (Myriapoda), a Class New to the Dutch Fauna, with the Description of a New Species. Entomol. Ber. 2004, 64, 3–9. [Google Scholar]
- Bedano, J.C.; Cantú, M.P.; Doucet, M.E. Soil Springtails (Hexapoda: Collembola), Symphylans and Pauropods (Arthropoda: Myriapoda) under Different Management Systems in Agroecosystems of the Subhumid Pampa (Argentina). Eur. J. Soil Biol. 2006, 42, 107–119. [Google Scholar] [CrossRef]
- Kicaj, H.; Qirjo, M. The Influence of Ecological Factors like Rainfall, Temperature, Moisture for Evaluating the Millipede Population in the Southern Region of Albania. In Proceedings of the Conference of Water Observation and Information System for Decision Support BALWOIS, Ohrid, Macedonia, 25 May 2010; p. 96. [Google Scholar]


| Field | Region | Main Crop | Sampling Periods 1 |
|---|---|---|---|
| RB1 | Ribatejo | Maize | Feb (cc); Jun, Jul (mc) for 2024–2025 |
| RB2 | |||
| RB3 | Tomato | Feb (cc); Jun, Jul (mc) for 2022–2025 | |
| RB4 | |||
| OE | Oeste | Broccoli | Feb (cc); Jun, Jul (mc) for 2024–2025 |
| AL | Alentejo | Lettuce | Feb (cc); May (mc) for 2023–2025 |
| Field | Texture | pH | Organic Matter (%) | Assimilable P (mg kg−1) | Assimilable K (mg kg−1) |
|---|---|---|---|---|---|
| RB1 | Clay loam | 7.9 | 1.1 | 389 | 164 |
| RB2 | Clay loam | 5.7 | 2.1 | 101 | 189 |
| RB3 | Loam | 8.1 | 1.0 | 226 | 90 |
| RB4 | Loam | 7.7 | 1.6 | 500 | 312 |
| OE | Sandy loam | 6.3 | 1.0 | 98 | 220 |
| AL | Sandy loam | 7.6 | 1.4 | 291 | 91 |
| Field | Modality | Median | Mean ± SD | Range (Min–Max) |
|---|---|---|---|---|
| RB1 | T | 66 | 63.7 ± 23.0 | 30–87 |
| CO | 45 | 45 ± 18.2 | 18–71 | |
| RB2 | T | 56 | 55.8 ± 4.3 | 51–61 |
| CO | 41 | 40.5 ± 6.7 | 30–51 | |
| RB3 | T | 42 | 46.5 ± 11.6 | 40–70 |
| CO | 28 | 28.8 ± 6.1 | 22–40 | |
| RB4 | T | 61 | 55 ± 15.9 | 30–71 |
| CO | 40 | 44.2 ± 11.1 | 32–62 | |
| OE | T | 56 | 50.8 ± 18.1 | 20–71 |
| CO | 39 | 33.3 ± 18.2 | 11–51 | |
| AL | T | 41 | 46.3 ± 9.1 | 40–60 |
| CO | 40 | 39.8 ± 9.6 | 28–51 |
| Taxa | RB1 | RB2 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2024 | 2025 | 2024 | 2025 | |||||||||||||||||||||
| Feb | Jun | Jul | Feb | Jun | Jul | Feb | Jun | Jul | Feb | Jun | Jul | |||||||||||||
| T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | |
| Acari | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | |
| Araneae | - | - | - | - | - | - | - | - | - | 5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Chilopoda | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 20 | - | - | - | - | - | 10 | - | 10 | - |
| Collembola | 10 | 10 | 10 | 8 | 20 | 10 | 10 | 8 | 20 | 10 | 20 | 10 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 10 | 20 | 20 | 20 | 10 |
| Coleoptera | - | 5 | - | - | 15 | 1 | 1 | - | 1 | 1 | 1 | 1 | 5 | - | - | - | 1 | 1 | 1 | - | - | - | - | - |
| Coleoptera (lv.) | - | 10 | - | - | 10 | - | 10 | - | 10 | - | 10 | 10 | 10 | - | - | - | 10 | - | 10 | - | 10 | 10 | - | 10 |
| Diplopoda | - | - | - | - | - | - | 10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Diptera | 1 | - | - | - | 1 | - | - | - | 1 | 1 | - | - | - | 1 | - | - | - | - | - | - | - | 1 | 1 | - |
| Diptera (lv.) | 10 | 10 | - | - | - | - | - | 10 | 10 | - | 10 | 10 | - | - | - | - | - | - | - | - | - | - | - | - |
| Hemiptera | - | - | - | - | 1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Himenoptera | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5 | - | - | - | - | - | - | - |
| Other (lv.) | 10 | - | - | 10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Pauropoda | - | - | - | - | - | - | - | - | - | - | 20 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Psocodea | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1 | - | - | - | 1 | - | - | - |
| Protura | - | - | - | - | 20 | 20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Symphyla | - | - | - | - | - | 20 | - | - | 20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| QBS-ar | 51 | 55 | 30 | 18 | 87 | 71 | 51 | 38 | 82 | 37 | 81 | 51 | 55 | 41 | 60 | 40 | 57 | 41 | 51 | 30 | 61 | 51 | 51 | 40 |
| Taxa | RB3 | RB4 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2022 | 2023 | 2024 | 2025 | |||||||||||||||||||||
| Feb | Jun | Jul | Feb | Jun | Jul | Feb | Jun | Jul | Feb | Jun | Jul | |||||||||||||
| T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | |
| Acari | 20 | 20 | 20 | 20 | 20 | - | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 |
| Araneae | - | 5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Collembola | 10 | 2 | 10 | 4 | 10 | 10 | 10 | 8 | 20 | 10 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 10 | 20 | 10 | 10 | 10 | 10 | 8 |
| Coleoptera | 5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1 | 1 | - | 1 | - | - | - | - |
| Coleoptera (lv.) | 10 | - | 10 | - | 1 | - | - | - | - | - | - | - | - | 10 | - | - | 10 | 10 | 10 | - | - | 10 | 10 | 10 |
| Diptera | - | - | 1 | 1 | 1 | 1 | 1 | - | - | - | - | - | 1 | 1 | 1 | - | - | 1 | 1 | 1 | - | - | 1 | - |
| Diptera (lv.) | - | - | - | - | - | - | 10 | - | - | - | - | - | - | - | 10 | - | - | - | 10 | - | - | - | - | - |
| Hemiptera | - | 1 | - | - | - | 1 | - | - | - | - | - | - | - | - | - | - | - | 1 | - | - | - | - | - | - |
| Himenoptera | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5 | - | - | - | - | - |
| Other (lv.) | - | - | - | - | 10 | 10 | - | - | - | - | 10 | - | - | 10 | 10 | - | - | 10 | - | - | - | - | - | - |
| Pauropoda | - | - | - | - | - | - | - | - | - | - | - | - | 20 | - | - | - | - | - | - | - | - | - | - | - |
| Symphyla | - | - | - | - | - | - | - | - | - | - | 20 | - | - | - | - | - | 20 | - | - | - | - | - | - | - |
| Thysanoptera | - | - | - | - | - | - | - | - | - | - | - | - | - | 1 | - | - | - | - | - | - | - | - | - | - |
| QBS-ar | 45 | 28 | 41 | 25 | 42 | 22 | 41 | 28 | 40 | 30 | 70 | 40 | 61 | 62 | 61 | 40 | 71 | 53 | 66 | 32 | 30 | 40 | 41 | 38 |
| Taxa | OE | AL | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2024 | 2025 | 2023 | 2024 | 2025 | ||||||||||||||||||||
| Feb | Jun | Jul | Feb | Jun | Jul | Feb | May | Feb | May | Feb | May | |||||||||||||
| T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | T | CO | |
| Acari | 20 | 20 | 20 | - | 20 | - | - | - | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 |
| Araneae | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Chilopoda | - | - | - | - | - | 20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Collembola | 20 | 20 | 20 | 10 | 20 | 10 | 20 | 10 | 20 | 20 | 10 | 10 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 10 | 20 | 8 |
| Coleoptera | - | - | 1 | - | - | 1 | - | - | - | - | 1 | 1 | - | - | - | - | 5 | - | - | - | - | - | - | - |
| Coleoptera (lv.) | - | - | - | - | - | 10 | - | - | 10 | 10 | 10 | - | 10 | 10 | - | - | - | - | - | - | - | - | - | - |
| Diptera | 1 | 1 | - | 1 | - | - | - | 1 | 1 | - | - | - | - | - | 1 | - | 1 | 1 | - | - | - | - | - | - |
| Diptera (lv.) | - | - | - | - | 10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Hemiptera | - | - | - | - | - | - | - | - | 1 | - | - | - | - | - | - | - | - | - | 1 | - | - | - | - | - |
| Himenoptera | - | - | - | - | - | - | - | - | - | - | - | 5 | - | - | - | - | - | - | - | - | - | - | - | - |
| Other (lv.) | 10 | 10 | - | - | 10 | - | - | - | - | - | - | - | 10 | - | - | - | 10 | 10 | - | - | - | - | - | - |
| Symphyla | 20 | - | - | - | - | - | - | - | - | - | 20 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| QBS-ar | 71 | 51 | 41 | 11 | 60 | 41 | 20 | 11 | 52 | 50 | 61 | 36 | 60 | 50 | 41 | 40 | 56 | 51 | 41 | 40 | 40 | 30 | 40 | 28 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Duarte, M.; Valério, E.; Cardoso, P.; Coelho, R.; Godinho, M. Effects of Cover Crops on Soil Mesofauna in Horticultural Systems in Portugal. Horticulturae 2026, 12, 408. https://doi.org/10.3390/horticulturae12040408
Duarte M, Valério E, Cardoso P, Coelho R, Godinho M. Effects of Cover Crops on Soil Mesofauna in Horticultural Systems in Portugal. Horticulturae. 2026; 12(4):408. https://doi.org/10.3390/horticulturae12040408
Chicago/Turabian StyleDuarte, Mário, Elsa Valério, Pedro Cardoso, Rosa Coelho, and Maria Godinho. 2026. "Effects of Cover Crops on Soil Mesofauna in Horticultural Systems in Portugal" Horticulturae 12, no. 4: 408. https://doi.org/10.3390/horticulturae12040408
APA StyleDuarte, M., Valério, E., Cardoso, P., Coelho, R., & Godinho, M. (2026). Effects of Cover Crops on Soil Mesofauna in Horticultural Systems in Portugal. Horticulturae, 12(4), 408. https://doi.org/10.3390/horticulturae12040408

