Comparative Genomic Analysis of Colletotrichum lini Strains with Different Virulence on Flax
Abstract
:1. Introduction
2. Materials and Methods
2.1. Fungal Material
2.2. DNA Extraction and Purification
2.3. DNA Library Preparation and Sequencing on the Oxford Nanopore Technologies and Illumina Platforms
2.4. Genome Assembly
2.5. Genome Analysis
3. Results
3.1. Genome Assembly and Polishing
3.2. Genome Annotation and Search for Effector Proteins
3.3. Comparative Genomic Analysis
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Dvorianinova, E.M.; Sigova, E.A.; Mollaev, T.D.; Rozhmina, T.A.; Kudryavtseva, L.P.; Novakovskiy, R.O.; Turba, A.A.; Zhernova, D.A.; Borkhert, E.V.; Pushkova, E.N.; et al. Comparative Genomic Analysis of Colletotrichum lini Strains with Different Virulence on Flax. J. Fungi 2024, 10, 32. https://doi.org/10.3390/jof10010032
Dvorianinova EM, Sigova EA, Mollaev TD, Rozhmina TA, Kudryavtseva LP, Novakovskiy RO, Turba AA, Zhernova DA, Borkhert EV, Pushkova EN, et al. Comparative Genomic Analysis of Colletotrichum lini Strains with Different Virulence on Flax. Journal of Fungi. 2024; 10(1):32. https://doi.org/10.3390/jof10010032
Chicago/Turabian StyleDvorianinova, Ekaterina M., Elizaveta A. Sigova, Timur D. Mollaev, Tatiana A. Rozhmina, Ludmila P. Kudryavtseva, Roman O. Novakovskiy, Anastasia A. Turba, Daiana A. Zhernova, Elena V. Borkhert, Elena N. Pushkova, and et al. 2024. "Comparative Genomic Analysis of Colletotrichum lini Strains with Different Virulence on Flax" Journal of Fungi 10, no. 1: 32. https://doi.org/10.3390/jof10010032