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Review

Beyond Binary: A Machine Learning Framework for Interpreting Organismal Behavior in Cancer Diagnostics

by
Aya Hasan Alshammari
1,*,
Monther F. Mahdi
2,
Takaaki Hirotsu
1,
Masayo Morishita
1,
Hideyuki Hatakeyama
1 and
Eric di Luccio
1,*
1
Hirotsu Bioscience Inc., New Otani Garden Court 22F, 4-1 Kioi-cho, Chiyoda-ku, Tokyo 102-0094, Japan
2
College of Pharmacy, Mustansiriyah University, Baghdad 10052, Iraq
*
Authors to whom correspondence should be addressed.
Biomedicines 2025, 13(10), 2409; https://doi.org/10.3390/biomedicines13102409
Submission received: 11 September 2025 / Revised: 28 September 2025 / Accepted: 29 September 2025 / Published: 30 September 2025
(This article belongs to the Special Issue Advanced Cancer Diagnosis and Treatment: Third Edition)

Abstract

Organismal biosensing leverages the olfactory acuity of living systems to detect volatile organic compounds (VOCs) associated with cancer, offering a low-cost and non-invasive complement to conventional diagnostics. Early studies demonstrate its feasibility across diverse platforms. In C. elegans, chemotaxis assays on urine samples achieved sensitivities of 87–96% and specificities of 90–95% in case–control cohorts (n up to 242), while calcium imaging of AWC neurons distinguished breast cancer urine with ~97% accuracy in a small pilot cohort (n ≈ 40). Trained canines have identified prostate cancer from urine with sensitivities of ~71% and specificities of 70–76% (n ≈ 50), and AI-augmented canine breath platforms have reported accuracies of ~94–95% across ~1400 participants. Insects such as locusts and honeybees enable ultrafast neural decoding of VOCs, achieving 82–100% classification accuracy within 250 ms in pilot studies (n ≈ 20–30). Collectively, these platforms validate the principle that organismal behavior and neural activity encode cancer-related VOC signatures. However, limitations remain, including small cohorts, methodological heterogeneity, and reliance on binary outputs. This review proposes a Dual-Pathway Framework, where Pathway 1 leverages validated indices (e.g., the Chemotaxis Index) for high-throughput screening, and Pathway 2 applies machine learning to high-dimensional behavioral vectors for cancer subtyping, staging, and monitoring. By integrating these approaches, organismal biosensing could evolve from proof-of-concept assays into clinically scalable precision diagnostics.
Keywords: organismal biosensing; machine learning; cancer diagnostics; volatile organic compounds (VOCs); behavioral phenotyping; deep learning; precision oncology; Caenorhabditis elegans organismal biosensing; machine learning; cancer diagnostics; volatile organic compounds (VOCs); behavioral phenotyping; deep learning; precision oncology; Caenorhabditis elegans

Share and Cite

MDPI and ACS Style

Alshammari, A.H.; Mahdi, M.F.; Hirotsu, T.; Morishita, M.; Hatakeyama, H.; di Luccio, E. Beyond Binary: A Machine Learning Framework for Interpreting Organismal Behavior in Cancer Diagnostics. Biomedicines 2025, 13, 2409. https://doi.org/10.3390/biomedicines13102409

AMA Style

Alshammari AH, Mahdi MF, Hirotsu T, Morishita M, Hatakeyama H, di Luccio E. Beyond Binary: A Machine Learning Framework for Interpreting Organismal Behavior in Cancer Diagnostics. Biomedicines. 2025; 13(10):2409. https://doi.org/10.3390/biomedicines13102409

Chicago/Turabian Style

Alshammari, Aya Hasan, Monther F. Mahdi, Takaaki Hirotsu, Masayo Morishita, Hideyuki Hatakeyama, and Eric di Luccio. 2025. "Beyond Binary: A Machine Learning Framework for Interpreting Organismal Behavior in Cancer Diagnostics" Biomedicines 13, no. 10: 2409. https://doi.org/10.3390/biomedicines13102409

APA Style

Alshammari, A. H., Mahdi, M. F., Hirotsu, T., Morishita, M., Hatakeyama, H., & di Luccio, E. (2025). Beyond Binary: A Machine Learning Framework for Interpreting Organismal Behavior in Cancer Diagnostics. Biomedicines, 13(10), 2409. https://doi.org/10.3390/biomedicines13102409

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