Parkinson’s Disease Detection from Voice Recordings Using Associative Memories
Abstract
:1. Introduction
2. Materials and Methods
2.1. Smallest Normalized Difference Associative Memory
2.2. Improved Smallest Normalized Difference Associative Memory
2.2.1. ISNDAM Algorithm
2.2.2. Training Phase
Algorithm 1: Training Phase |
Data: Result: Initialization: Step 1: Generate p matrices, one for each fundamental pattern association , using Equation (6). Step 2: Compare the previously generated p matrices, and keep the maximum value (⋁). The result is a learning matrix that contains the maximum value of all p generated matrices. Step 3: Compare the n components of all the p instances in the learning set, and keep the maximum value (⋁), using Equation (8). The result is an n-dimensional vector that contains the highest value of each of the n components of all the the p instances in the learning set. Step 4: Recall all the p instances in the learning set, using Equation (9). Step 5: Obtain the magnitude of the similarity between each of the p instances in the learning set and the recalled pattern , using Equation (11). Step 6: Identify value, using the smallest normalized similarity value . Step 7: Assign class label to the recalled pattern . End of Training Phase |
2.2.3. Relevance Identification Phase
Algorithm 2: Relevance Identification Phase |
2.2.4. Testing Phase
Algorithm 3: Testing Phase |
Data: Result: Initialization: Step 1: Use memory , previously generated in the training phase, to recall from a given input instance that was not present in the learning set, using Equation (9). Step 2: Obtain the magnitude of the similarity between each of the p instances in the learning set and the recalled pattern , using Equation (11). Step 3: Identify value, using the smallest normalized similarity value . Step 4: Assign class label to the recalled pattern . End of Testing Phase |
2.2.5. ISNDAM Numerical Example
- One of the contributions of the ISNDAM model is the simplification of the Beta operator to a single case, which eliminates ambiguity in class assignment and consequently increases classification performance.
- The second contribution of this model is the relevance identification phase, which identifies all the relevant characteristics for classification purposes through a wrapper-based feature selection approach applied to SNDAM, as is shown in Figure 1.
2.3. Datasets
- The first dataset was created at Oxford University to differentiate PD patients from healthy individuals. It was generated from voice signal analysis measurements from thirty-one individuals, where twenty-three have PD. This dataset consists of 195 instances with 23 attributes. More details on how the recordings were gathered as well as the feature extraction process can be found at [41].
- The second dataset was created at Istanbul University, from voice recordings of forty individuals, where twenty of them are healthy individuals and the remaining twenty patients have PD. This dataset consists of 1040 instances with 27 attributes. More details on how the recordings were gathered as well as the feature extraction process can be found at [12].
2.4. Performance Metrics
- Sensitivity represents a test’s capacity to accurately identify all individuals who have a certain condition, also known as recall:
- Accuracy refers to a model’s performance. It is computed as the proportion of tests that were properly predicted by all of the predictions:
- Specificity indicates a test’s capacity to correctly detect every individual who does not have a certain condition:
- False positive rate (FPR) indicates a test’s capacity to incorrectly detect healthy individuals who do not have a certain condition:
- Precision refers to the reliability of a model in predicting a positive test result. It represents the proportion of tests that were accurately predicted as positive to the total number of tests that were forecast as positive:
- Area under the ROC curve (AUC) represents how well a binary classification algorithm is able to identify the difference between two classes [43]:
- Geometric mean (G-Mean) estimates the balance of classification performance between the minority and majority classes:
- F1-score is determined by finding the harmonic mean of the assessments for sensitivity and precision. It represents sensitivity and precision into a single statistic in a symmetrical form:
2.5. Statistical Hypothesis Tests
Algorithm 4: Statistical Significance Test |
3. Results
- First: The efficiency of ISNDAM was evaluated and compared to the efficiency of seventy different models that are included in the WEKA workbench [48,49]. All experiments were performed using 5 × 2 cross-validation, as suggested in [50,51]. Additionally, a statistical significance test was conducted to verify if there existed statistically significant differences in the performance of each compared algorithm included in the WEKA workbench. Performance outcomes using Dataset 1 are shown in Table 2, while Table 3 shows the results of the statistical significance analysis for Dataset 1. Similarly, performance outcomes using Dataset 2 are shown in Table 4, while the statistical significance analysis for Dataset 2 is presented in Table 5.
- Second: The performance of ISNDAM was compared to that of previous studies [13,19,24,52] using Dataset 1, as well as to that of previous studies [11,12,18] using Dataset 2. The performance results of ISNDAM compared to that of previous studies [13,24] using Dataset 1 are shown in Table 6. In the same way, the performance results of ISNDAM compared to that of previous studies [19,52] using Dataset 1 are shown in Table 7. Similarly, the performance results of ISNDAM compared to that of previous studies [11,12,18] using Dataset 2 are shown in Table 8.
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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No. | Dataset | Instances | Attributes |
---|---|---|---|
1. | Parkinson’s Dataset (University of Oxford) [41] | 195 | 23 |
2. | Parkinson’s Disease Classification Dataset (Istanbul University) [12] | 1040 | 27 |
No. | Algorithm | Dataset 1 | |||||
---|---|---|---|---|---|---|---|
Accuracy | Sensitivity | Specificity | Precision | AUC | G-Mean | ||
1. | IBk | 96.41 | 96.60 | 95.83 | 98.61 | 96.22 | 96.21 |
2. | NaiveBayes | 69.23 | 61.90 | 91.67 | 95.79 | 76.79 | 75.32 |
3. | MultilayerPerceptron | 90.77 | 92.52 | 85.42 | 95.10 | 88.97 | 88.89 |
4. | RandomForest | 91.79 | 95.92 | 79.17 | 93.38 | 87.54 | 87.14 |
5. | RandomTree | 84.62 | 89.80 | 68.75 | 89.80 | 79.27 | 78.57 |
6. | SMO | 87.18 | 99.32 | 50.00 | 85.88 | 74.66 | 70.46 |
7. | SNDAM | 96.61 | 96.93 | 96.83 | 98.63 | 96.88 | 96.87 |
★ | ISNDAM | 99.48 | 99.98 | 99.31 | 98.75 | 99.65 | 99.64 |
No. | Compared Algorithms | Dataset 1 | ||
---|---|---|---|---|
p Value | Null Hypothesis | Alternative Hypothesis | ||
1. | ISNDAM—IBk | 4.82 × 10 | ✗ | ✓ |
2. | ISNDAM—NaiveBayes | 2.20 × 10 | ✗ | ✓ |
3. | ISNDAM—MultilayerPerceptron | 5.10 × 10 | ✗ | ✓ |
4. | ISNDAM—RandomForest | 4.41 × 10 | ✗ | ✓ |
5. | ISNDAM—RandomTree | 7.51 × 10 | ✗ | ✓ |
6. | ISNDAM—SMO | 9.31 × 10 | ✗ | ✓ |
7. | ISNDAM—SNDAM | 1.37 × 10 | ✗ | ✓ |
No. | Algorithm | Dataset 2 | |||||
---|---|---|---|---|---|---|---|
Accuracy | Sensitivity | Specificity | Precision | AUC | G-Mean | ||
1. | IBk | 67.96 | 72.24 | 62.31 | 71.72 | 67.27 | 67.09 |
2. | NaiveBayes | 59.85 | 73.98 | 41.15 | 62.45 | 57.57 | 55.17 |
3. | MultilayerPerceptron | 68.05 | 69.91 | 65.58 | 72.88 | 67.74 | 67.71 |
4. | RandomForest | 73.10 | 79.94 | 64.04 | 74.63 | 71.99 | 71.54 |
5. | RandomTree | 66.14 | 71.80 | 58.65 | 69.68 | 65.23 | 64.89 |
6. | SMO | 66.23 | 84.74 | 41.73 | 65.80 | 63.23 | 59.46 |
7. | SNDAM | 98.28 | 98.18 | 98.19 | 97.95 | 98.19 | 98.19 |
★ | ISNDAM | 99.66 | 99.23 | 99.98 | 99.98 | 99.61 | 99.60 |
No. | Compared Algorithms | Dataset 2 | ||
---|---|---|---|---|
p Value | Null Hypothesis | Alternative Hypothesis | ||
1. | ISNDAM—IBk | 1.73 × 10 | ✗ | ✓ |
2. | ISNDAM—NaiveBayes | 2.20 × 10 | ✗ | ✓ |
3. | ISNDAM—MultilayerPerceptron | 5.86 × 10 | ✗ | ✓ |
4. | ISNDAM—RandomForest | 1.12 × 10 | ✗ | ✓ |
5. | ISNDAM—RandomTree | 1.08 × 10 | ✗ | ✓ |
6. | ISNDAM—SMO | 6.54 × 10 | ✗ | ✓ |
7. | ISNDAM—SNDAM | 1.95 × 10 | ✗ | ✓ |
No. | Algorithms | Dataset 1 | ||||
---|---|---|---|---|---|---|
Accuracy | Sensitivity | Specificity | AUC | G-Mean | ||
1. | KNN Cityblock distance | 69.74 | 66.67 | 70.75 | 68.71 | 68.68 |
2. | KNN Euclidean distance | 72.31 | 68.75 | 73.47 | 71.11 | 71.07 |
3. | SVM Polynomial kernel | 81.03 | 79.17 | 87.76 | 83.46 | 83.35 |
4. | SVM Linear kernel | 82.90 | 87.33 | 78.56 | 82.94 | 82.83 |
5. | SVM RBF kernel | 88.21 | 91.67 | 77.55 | 84.61 | 84.31 |
6. | ANN Scaled conjugate gradient | 85.12 | 70.00 | 96.59 | 83.30 | 82.23 |
7. | ANN Levenberg–Marquardt | 95.89 | 93.75 | 96.59 | 95.17 | 95.16 |
★ | ISNDAM | 99.48 | 99.98 | 99.31 | 99.65 | 99.64 |
No. | Algorithms | Dataset 1 | |||||
---|---|---|---|---|---|---|---|
Feature Reduction/Selection | Accuracy | Sensitivity | Specificity | AUC | G-Mean | ||
1. | LS-SVM | 22 RF | 95.38 | 96.44 | 92.05 | 94.24 | 94.21 |
2. | LS-SVM | 22 WF | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3. | PNN | 22 RF | 95.49 | 97.99 | 88.47 | 93.23 | 93.10 |
4. | PNN | 22 WF | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5. | GRNN | 22 RF | 95.49 | 98.13 | 88.20 | 93.16 | 93.03 |
6. | GRNN | 22 WF | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
★ | ISNDAM | 22 RF | 99.48 | 99.98 | 99.31 | 99.65 | 99.64 |
No. | Algorithms | Dataset 2 | |||
---|---|---|---|---|---|
Accuracy | Sensitivity | Precision | F1 | ||
1. | SVM IMF1 | 96.54 | 92.01 | 99.45 | 95.58 |
2. | SVM IMF2 | 93.16 | 87.76 | 95.71 | 91.56 |
3. | SVM IMF3 | 84.68 | 82.23 | 83.24 | 82.73 |
4. | SVM IMF4 | 83.00 | 75.00 | 81.49 | 78.11 |
5. | SVM IMF5 | 77.54 | 74.89 | 72.89 | 73.87 |
6. | SVM IMF6 | 63.33 | 54.25 | 63.05 | 58.31 |
7. | RF IMF1 | 94.89 | 94.78 | 95.23 | 95.00 |
8. | RF IMF2 | 91.67 | 94.12 | 84.21 | 88.88 |
9. | RF IMF3 | 81.52 | 70.00 | 88.44 | 78.14 |
10. | RF IMF4 | 79.67 | 66.00 | 81.25 | 72.83 |
11. | RF IMF5 | 77.08 | 70.22 | 73.68 | 71.90 |
12. | RF IMF6 | 72.92 | 60.00 | 70.59 | 64.86 |
★ | ISNDAM | 99.66 | 99.23 | 99.98 | 99.60 |
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Luna-Ortiz, I.; Aldape-Pérez, M.; Uriarte-Arcia, A.V.; Rodríguez-Molina, A.; Alarcón-Paredes, A.; Ventura-Molina, E. Parkinson’s Disease Detection from Voice Recordings Using Associative Memories. Healthcare 2023, 11, 1601. https://doi.org/10.3390/healthcare11111601
Luna-Ortiz I, Aldape-Pérez M, Uriarte-Arcia AV, Rodríguez-Molina A, Alarcón-Paredes A, Ventura-Molina E. Parkinson’s Disease Detection from Voice Recordings Using Associative Memories. Healthcare. 2023; 11(11):1601. https://doi.org/10.3390/healthcare11111601
Chicago/Turabian StyleLuna-Ortiz, Irving, Mario Aldape-Pérez, Abril Valeria Uriarte-Arcia, Alejandro Rodríguez-Molina, Antonio Alarcón-Paredes, and Elías Ventura-Molina. 2023. "Parkinson’s Disease Detection from Voice Recordings Using Associative Memories" Healthcare 11, no. 11: 1601. https://doi.org/10.3390/healthcare11111601
APA StyleLuna-Ortiz, I., Aldape-Pérez, M., Uriarte-Arcia, A. V., Rodríguez-Molina, A., Alarcón-Paredes, A., & Ventura-Molina, E. (2023). Parkinson’s Disease Detection from Voice Recordings Using Associative Memories. Healthcare, 11(11), 1601. https://doi.org/10.3390/healthcare11111601