Applying Tandem Mass Spectral Libraries for Solving the Critical Assessment of Small Molecule Identification (CASMI) LC/MS Challenge 2012
Abstract
:1. Introduction
2. Results and Discussion
Challenge | Matched compound(s) | Library | Score | Correct compound |
---|---|---|---|---|
1 | Kanamycin A | MassBank, NIST MS/MS 2012, Wiley Registry MS/MS | 1.0 | Kanamycin A |
10 | N-Phenylphthalimide | Wiley Registry | 1.0 | 1-Aminoanthraquinone |
2-Aminoanthraquinone | MS/MS | 0.84 | ||
13 | Benzyldiphenylphosphine oxide | MassBank | 1.0 | Benzyldiphenylphosphine oxide |
14 | Carbazole | MassBank | 1.0 | 1H-Benz[g]indole |
1H-benz[g]indole | 0.99 | |||
15 | 1-Isopropyl-5-methyl-1H-indole-2,3-dione | MassBank | 1.0 | 1-Isopropyl-5-methyl-1H-indole-2,3-dione |
2.1. MassBank Results
Challenge | CE | Matched compound(s) | Accession | Score |
---|---|---|---|---|
1 | 10 eV | Kanamycin A (2nd place in hit list) | KO009014 | 0.733 |
20 eV | Kanamycin A | KO009015 | 0.874 | |
30 eV | Kanamycin A (2nd place in hit list) | KO009015 | 0.773 | |
13 | 25% | Benzyldiphenylphosphine oxide | UF011001 | 0.986 |
45% | Benzyldiphenylphosphine oxide | UF011003 | 0.995 | |
HCD 45 | Benzyldiphenylphosphine oxide | UF011007 | 0.996 | |
HCD 75 | Benzyldiphenylphosphine oxide | UF011009 | 0.967 | |
14 | HCD 120 | Carbazole (2nd place in hit list) | UF026312 | 0.807 |
1H-Benz[g]indole (7th place in hit list) | UF011409 | 0.725 | ||
HCD 180 | Carbazole | UF026314 | 0.819 | |
1H-Benz[g]indole (3rd place in hit list) | UF011413 | 0.801 | ||
15 | HCD 120 | 1-Isopropyl-5-methyl-1H-indole-2,3-dione | UF011512 | 0.968 |
HCD 90 | 1-Isopropyl-5-methyl-1H-indole-2,3-dione | UF011510 | 0.971 |
2.2. NIST MS/MS 2012 Results
Challenge | CE | Matched compound | MF | RMF | Prob |
---|---|---|---|---|---|
1 | 10 eV | Kanamycin A | 645 | 879 | 98.88 |
20 eV | Kanamycin A | 501 | 833 | 98.81 | |
30 eV | Kanamycin A | 531 | 776 | 98.66 |
2.3. METLIN Results
2.4. Wiley Registry MS/MS Results
2.4.1. Search Results with the Published Library
Challenge | CE | Matched compound(s) | ramp | m/z | Delta |
---|---|---|---|---|---|
1 | 10 eV | Tobramycin | 72.03 | 468.2665 | 16.9788 |
20 eV | Tobramycin | 68.43 | 468.2665 | 16.9788 | |
30 eV | Tobramycin | 65.85 | 468.2665 | 16.9788 | |
10 | 35% | N-Phenylphthalimide (1st place in hit list) | 54.1 | 224.0707 | 0.0004 |
2-Aminoanthraquinone (2nd place in hit list) | 45.6 | 224.0707 | 0.0004 |
2.4.1. Search Results with the Extended Library
Challenge | CE | Matched compound(s) | ramp | m/z | Delta |
---|---|---|---|---|---|
1 | 10 eV | Kanamycin A | 98.84 | 485.2454 | -0.0001 |
20 eV | Kanamycin A | 98.46 | 485.2454 | -0.0001 | |
30 eV | Kanamycin A | 98.46 | 485.2454 | -0.0001 | |
10 | 35% | N-Phenylphthalimide (1st place in hit list) | 36.05 | 224.0707 | 0.0004 |
1-Aminoanthraquinone (2nd place in hit list) | 33.37 | 224.0707 | 0.0004 | ||
2-Aminoanthraquinone (3rd place in hit list) | 30.39 | 224.0707 | 0.0004 | ||
13 | 25% | Benzyldiphenylphosphine oxide | 81.58 | 293.1090 | 0.0007 |
45% | Benzyldiphenylphosphine oxide | 91.53 | 293.1090 | 0.0007 | |
HCD 45 | Benzyldiphenylphosphine oxide | 84.05 | 293.1090 | 0.0007 | |
HCD 75 | Benzyldiphenylphosphine oxide | 83.25 | 293.1090 | 0.0007 | |
14 | HCD 120 | 1H-Benz[g]indole (1st place in hit list) | 80.30 | 168.0808 | -0.0004 |
Carbazole (2nd place in hit list) | 18.86 | 168.0808 | -0.0004 | ||
HCD 180 | 1H-Benz[g]indole (1st place in hit list) | 67.04 | 168.0808 | -0.0004 | |
Carbazole (2nd place in hit list) | 30.91 | 168.0808 | -0.0004 |
3. Experimental Section
3.1. MassBank
3.2. NIST MS/MS 2012
3.3. METLIN
3.4. Wiley Registry MS/MS
4. Conclusions
Acknowledgments
Conflict of Interest
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Oberacher, H. Applying Tandem Mass Spectral Libraries for Solving the Critical Assessment of Small Molecule Identification (CASMI) LC/MS Challenge 2012. Metabolites 2013, 3, 312-324. https://doi.org/10.3390/metabo3020312
Oberacher H. Applying Tandem Mass Spectral Libraries for Solving the Critical Assessment of Small Molecule Identification (CASMI) LC/MS Challenge 2012. Metabolites. 2013; 3(2):312-324. https://doi.org/10.3390/metabo3020312
Chicago/Turabian StyleOberacher, Herbert. 2013. "Applying Tandem Mass Spectral Libraries for Solving the Critical Assessment of Small Molecule Identification (CASMI) LC/MS Challenge 2012" Metabolites 3, no. 2: 312-324. https://doi.org/10.3390/metabo3020312
APA StyleOberacher, H. (2013). Applying Tandem Mass Spectral Libraries for Solving the Critical Assessment of Small Molecule Identification (CASMI) LC/MS Challenge 2012. Metabolites, 3(2), 312-324. https://doi.org/10.3390/metabo3020312