Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden
Abstract
:1. Introduction
2. Results
2.1. Study Population
2.2. S. typhi-Confirmed Cases
2.3. Logistic Regression Model Using Typhoid Cases (Negative/Positive) as the Dependent Variable and Its Association with Other Covariates
2.4. Antibiogram of S. typhi Isolates
3. Discussion
3.1. Prevalence and Geographic Variations
3.2. Vaccination Status, Socioeconomic Factors, Antibiotic Resistance, and Clinical Data
4. Materials and Methods
4.1. Study Design
4.2. Inclusion and Exclusion Criteria
4.3. Data Collection
4.4. Sample Collection and Processing
4.5. Description of Bacterial Culture, Controls, Chemical Compositions of Media, and Antibiotics
4.6. Phenotypic and Genotypic Identification
4.7. Antibiotic Susceptibility Testing (AST)
4.8. Epidemiological and Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Variable | Categories | Population (%) | S. typhi Infection Status | p-Value | |
---|---|---|---|---|---|
Negative N (%) | Positive N (%) | ||||
Gender | Male | 3235 (56.4) | 2788 (55.3) | 447 (64.7) | 0.001 |
Female | 2500 (43.6) | 2256 (44.7) | 244 (35.3) | ||
Age groups | Childhood (0–11 years) | 2747 (47.9) | 2318 (46.0) | 429 (62.1) | 0.001 |
Adolescence (12–18 years) | 896 (15.6) | 786 (15.6) | 110 (15.9) | ||
Adulthood (19–59 years) | 1830 (31.9) | 1684 (33.4) | 146 (21.1) | ||
Older Adults (60+ years) | 262 (4.6) | 256 (5.1) | 6 (0.9) | ||
Geographic distribution | Peshawar | 5033 (87.8) | 4424 (87.7) | 609 (88.1) | 0.014 |
Hangu | 264 (4.6) | 232 (4.6) | 32 (4.6) | ||
Malakand | 150 (2.6) | 136 (2.7) | 14 (2.0) | ||
Mardan | 174 (3.0) | 146 (2.9) | 28 (4.1) | ||
Bannu | 34 (0.6) | 28 (0.6) | 6 (0.9) | ||
Kohat | 80 (1.4) | 78 (1.5) | 2 (0.3) | ||
Locality | Urban | 2522 (44.0) | 2264 (44.9) | 258 (37.3) | 0.002 |
Rural | 3163 (55.2) | 2732 (54.2) | 431 (62.4) | ||
Peri-Urban | 50 (0.9%) | 48 (1.0) | 2 (0.3) | ||
Water Source | Municipality | 4771 (83.2) | 4154 (82.4) | 617 (89.3) | 0.001 |
Ground Water | 964 (16.8) | 890 (17.6) | 74 (10.7) | ||
TCV Vaccination Status | No | 4807 (83.2) | 4134 (82.0) | 673 (97.4) | 0.002 |
Yes | 928 (16.2) | 910 (18.0) | 18 (2.6) | ||
History of Fever | Three or >3 days | 4128 (72.0) | 3505 (69.5) | 623 (90.1) | 0.002 |
Recent Travel | 1607 (28.0) | 1539 (30.5) | 68 (9.9) | ||
Leucopenia | Normal cases (4000–11,000/cm) | 5670 (98.9) | 5044 (100) | 626 (90.6) | 0.002 |
Abnormal cases (<4000/cm) | 65 (1.1) | 0 (0) | 65 (9.4) | ||
Thrombocytopenia | Normal cases (150,000–450,000/cm) | 5605 (97.7) | 5044 (100) | 561 (81.2) | 0.001 |
Mild (50,000–149,000/cm) | 103 (1.8) | 0 (0.0) | 103 (14.9) | ||
Moderate (30,000–50,000/cm) | 27 (0.50) | 0 (0.0) | 27 (3.9) | ||
ALT/SGPT | Normal cases (<45 U/L) | 5333 (93.0) | 5044 (100) | 289 (41.8) | 0.001 |
Abnormal cases (>45 U/L) | 402 (7.0) | 0 (0) | 402 (58.2) | ||
CRP | Normal cases (up to 5 mg/dl) | 5045 (88.0) | 5044 (100) | 1 (0.1) | 0.002 |
Abnormal cases (>5 mg/dl) | 690 (12.0) | 0 (0) | 690 (99.9) |
Characteristics | Univariate Analysis | Multivariate Analysis | ||||
---|---|---|---|---|---|---|
OR | 95%CI | p-Value | OR | 95%CI | p-Value | |
Age group (in years) | ||||||
12–18 (adolescence) vs. child * | 0.75 | 0.60–0.94 | 0.001 | 0.52 | 0.419–0.664 | 0.001 |
19–59 (adulthood) vs. child * | 0.46 | 0.38–0.57 | 0.001 | 0.30 | 0.252–0.378 | 0.001 |
>60 (old age) vs. child * | 0.12 | 0.05–0.28 | 0.003 | 0.08 | 0.035–0.181 | 0.001 |
Gender | ||||||
Female vs. male | 0.67 | 0.57–0.79 | 0.001 | 0.67 | 0.56–0.80 | 0.002 |
Locality | ||||||
Rural vs. urban | 1.38 | 1.17–1.63 | 0.001 | 1.38 | 1.16–1.63 | 0.001 |
Peri-urban vs. urban | 0.36 | 0.08–1.51 | 0.366 | 0.26 | 0.06–1.11 | 0.007 |
Water source | ||||||
Groundwater vs. municipal | 0.56 | 0.43–0.72 | 0.001 | 0.56 | 0.43–0.73 | 0.002 |
TCV vaccination status | ||||||
Yes vs. no | 0.12 | 0.07–0.19 | 0.001 | 0.07 | 0.04–0.11 | 0.001 |
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Asghar, M.; Khan, T.A.; Séraphin, M.N.; Schimke, L.F.; Cabral-Marques, O.; Haq, I.U.; Farooqi, Z.-u.-R.; Campino, S.; Ullah, I.; Clark, T.G. Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden. Antibiotics 2024, 13, 765. https://doi.org/10.3390/antibiotics13080765
Asghar M, Khan TA, Séraphin MN, Schimke LF, Cabral-Marques O, Haq IU, Farooqi Z-u-R, Campino S, Ullah I, Clark TG. Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden. Antibiotics. 2024; 13(8):765. https://doi.org/10.3390/antibiotics13080765
Chicago/Turabian StyleAsghar, Muhammad, Taj Ali Khan, Marie Nancy Séraphin, Lena F. Schimke, Otavio Cabral-Marques, Ihtisham Ul Haq, Zia-ur-Rehman Farooqi, Susana Campino, Ihsan Ullah, and Taane G. Clark. 2024. "Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden" Antibiotics 13, no. 8: 765. https://doi.org/10.3390/antibiotics13080765
APA StyleAsghar, M., Khan, T. A., Séraphin, M. N., Schimke, L. F., Cabral-Marques, O., Haq, I. U., Farooqi, Z. -u. -R., Campino, S., Ullah, I., & Clark, T. G. (2024). Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden. Antibiotics, 13(8), 765. https://doi.org/10.3390/antibiotics13080765