Epidemic Modeling in Satellite Towns and Interconnected Cities: Data-Driven Simulation and Real-World Lockdown Validation
Abstract
:1. Introduction
- A new mathematical framework, namely, SCIRD (Susceptible–Confined–Infected–Recovered–Deceased) is proposed to address the dynamics of COVID-19 dissemination in small interconnected urban centers. Unlike most SIR-based proposals that do not simultaneously cope with population flows and lockdowns, our approach gathers both factors into a unified and practical framework.
- A comprehensive evaluation of the lockdown outcomes, providing a non-intrusive methodology to assess different quarantine schemes in two isolated urban centers. By taking real data from these regions, we determine the minimum duration of lockdowns to consistently reduce cases and deaths. We validate our model using real data from a lockdown case that took place in a Brazilian medium-sized city.
- The combined analysis of lockdowns and people’s mobility between satellite cities and small/medium-sized urban centers, as opposed to contexts studied in the scientific literature such as large metropolitan areas like state capitals. The calibration of mobility rates is performed from data locally collected from each interconnected city.
- A mathematical formulation capable of capturing the spread of COVID-19 for the challenging cases where the number of infected remains limited to dozens or, at most, hundreds amid a context of data scarcity.
2. Materials and Methods
2.1. Study Area and Selection Criteria
- The region is the main urban hub in Northwest São Paulo, Brazil’s leading state, which accounts for 9.2% of the national GDP, ranking it ahead of countries like Poland, Sweden, Norway, Ireland, and Singapore [51,52]. The region is economically significant and acts as a primary transit hub for people.
- The region is a medium-sized center with high influence on neighboring cities [53]. This setting offers a hard-to-find case of COVID-19 outbreak with a major city and its satellite towns, free from the confounding effects of larger metropolitan zones.
- Unlike previous works that take the large metropolitan area of Wuhan (China) as a study case, which has 12 million inhabitants, our second study region, the Brazilian city of Araraquara, was chosen because it was the first mid-sized city (with fewer than 300,000 residents) in the world to implement a 10-day-long lockdown [54,55,56,57].
- There is a gap in the literature regarding studies focused on less populous and non-capital areas [30,50]. Indeed, a search in the Scopus database combining the terms “COVID-19”, “lockdown”, “small cities”, and “epidemiology model” yielded only six papers [44,58,59,60,61,62], none of which focused on modeling COVID-19 spread with short-range transmission between nearby cities like ours. Inspired by works based on global regions [32,33,34,35,36], our micro-regional-based approach can advance the literature, complementing existing macro-analytical studies.
2.2. Integrating Mobility and Lockdown Strategies: A SCIRD-Driven Framework
- The increase in the compartment of infected is proportional to the number of infected and susceptible individuals.
- The rate at which the infected individuals move to the recovered compartment is proportional to the number of infected individuals.
- The incubation period is short, meaning a susceptible individual who contracts the disease starts transmitting it immediately.
- After recovering from COVID-19, individuals develop temporary immunity, i.e., they do not become reinfected within a period of less than 4 months [68].
2.3. Effective Reproduction Number
2.4. Data Sources and Parameter Calibration
- São Paulo State Data Analysis Website (SEADE government foundation) [74]: Time-series of confirmed cases and deaths for all cities in the study area (Figure 1) were acquired from the official data repository of São Paulo State government. For a technical note regarding data collection, aggregation, and processing, refer to [75], which includes the public GitHub repository maintained by the government agency.
- SP COVID-19 Info Tracker Platform [30]: Active cases and recoveries were downloaded from the Info Tracker platform, an open data-driven tool available for public authorities, society, and press agencies. More precisely, the number of recovered individuals at time t is estimated by assuming an average recovery time of days [76], i.e., subtracting the total number of deaths from the number of cases days ago, while the number of active cases (infected) at time t is obtained by subtracting the total number of deaths and recoveries from the total number of cases at time t [77].
- Brazilian Institute of Geography and Statistics (IBGE) [64]: Mobility rates related to the work and study activities for each satellite city and the target urban center. To explicitly determine the population mobility between cities, the urban displacement as originally measured and provided by the Brazilian Institute of Geography and Statistics (IBGE) [64,78] is employed. More specifically, the flow rate of people traveling daily from city i to j is computed as follows:
2.5. Numerical Solution and Computational Aspects
2.6. Evaluation Metrics
3. Results and Validation
3.1. Sensitivity Analysis
3.2. Assessing Quarantine Scenarios in Medium-Sized Urban Centers
3.3. Validation with a Real Lockdown in a Medium-Sized Urban Center
4. Findings, Scope, and Limitations
5. Conclusions and Future Work
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Appendix A. Parameter Descriptions
Notation | Description | Value | Source |
---|---|---|---|
Number of susceptibles in (Presidente Prudente) at the initial time () | 223,677 | Database provided by [53] | |
Number of susceptibles in (Alfredo Marcondes) at the initial time () | 4118 | Database provided by [53] | |
Number of susceptibles in (Álvares Machado) at the initial time () | 24,729 | Database provided by [53] | |
Number of susceptibles in (Regente Feijó) at the initial time () | 19,859 | Database provided by [53] | |
Number of susceptibles in (Indiana) at the initial time () | 4936 | Database provided by [53] | |
Number of susceptibles in (Anhumas) at the initial time () | 4026 | Database provided by [53] | |
for | Infection rate of susceptibles in | Calibrated empirically starting as baseline the infection rate reported in [27] | |
for | Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | |
for | Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | |
Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of susceptibles in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Number of infected individuals in at the initial time () | 2 | Filtered from data spreadsheets provided by [74] | |
Number of infected individuals in at the initial time () | 0 | Filtered from data spreadsheets provided by [74] | |
Number of infected individuals in at the initial time () | 0 | Filtered from data spreadsheets provided by [74] | |
Number of infected individuals in at the initial time () | 0 | Filtered from data spreadsheets provided by [74] | |
Number of infected individuals in at the initial time () | 1 | Filtered from data spreadsheets provided by [74] | |
Number of infected individuals in at the initial time () | 0 | Filtered from data spreadsheets provided by [74] | |
Total population in | 223,749 | Database provided by [53] | |
Total population in | 4118 | Database provided by [53] | |
Total population in | 24,733 | Database provided by [53] | |
Total population in | 19,860 | Database provided by [53] | |
Total population in | 4936 | Database provided by [53] | |
Total population in | 4026 | Database provided by [53] | |
Confinement rate of susceptibles in | Calculated based on the data reported in [70] | ||
Rate at which the confined individuals become susceptible again in | 0.15 | By assumption, this rate is considered to be the same as the confinement rate | |
Infection rate of confined individuals in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of confined individuals in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of confined individuals in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of confined individuals in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of confined individuals in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Infection rate of confined individuals in | Calibrated empirically starting with baseline of the infection rate reported in [27] | ||
Recovery rate of infected individuals in | 0.98 | Calculated by | |
Mortality rate due to the disease in | 0.02 | Calibrated empirically until the curve matched the real cases | |
Recovery rate of infected individuals in | 0.95 | Calculated by | |
Mortality rate due to the disease in | 0.05 | Calibrated empirically until the curve matched the real cases | |
Recovery rate of infected individuals in | 0.98 | Calculated by | |
Mortality rate due to the disease in | 0.02 | Calibrated empirically until the curve matched the real cases | |
Recovery rate of infected individuals in | 0.98 | Calculated by | |
Mortality rate due to the disease in | 0.02 | Calibrated empirically until the curve matched the real cases | |
Recovery rate of infected individuals in | 0.98 | Calculated by | |
Mortality rate due to the disease in | 0.0 | Calibrated empirically until the curve matched the real cases | |
Recovery rate of infected individuals in | 0.98 | Calculated by | |
Mortality rate due to the disease in | 0.0 | Calibrated empirically until the curve matched the real cases |
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Notation | Description |
---|---|
Number of cities | |
Notation for city i | |
Total population in at time t | |
Number of susceptible individuals in at time t | |
Number of infected individuals in at time t | |
Number of confined individuals in at time t | |
Number of deaths in at time t | |
Number of recovered individuals in at time t | |
Flow rate of people traveling from to every day | |
Infection rate of susceptible individuals in | |
Confinement rate of susceptible individuals in | |
Rate at which confined individuals revert to being susceptible in | |
Infection rate of confined individuals in | |
Recovery rate of infected individuals in | |
Mortality rate in |
Week | Weekly Cases | ||||
---|---|---|---|---|---|
No Lock. | Lock. 70 | Lock. 30 | Lock. 20 | Lock. 10 * | |
1 | 18 | 18 | 18 | 18 | 18 |
2 | 27 | 27 | 27 | 27 | 27 |
3 | 43 | 43 | 43 | 43 | 43 |
4 | 66 | 38 | 38 | 38 | 37 |
5 | 108 | 12 | 12 | 12 | 13 |
6 | 170 | 3 | 3 | 3 | 10 |
7 | 226 | 1 | 1 | 2 | 7 |
8 | 299 | 1 | 0 | 1 | 2 |
9 | 382 | 0 | 0 | 2 | 2 |
10 | 381 | 0 | 0 | 2 | 1 |
11 | 341 | 0 | 0 | 3 | 0 |
12 | 303 | 0 | 0 | 4 | 0 |
13 | 268 | 0 | 0 | 5 | 0 |
14 | 235 | 0 | 0 | 6 | 0 |
Week | Accumulated Deaths | ||||
---|---|---|---|---|---|
No Lock. | Lock. 70 | Lock. 30 | Lock. 20 | Lock. 10 * | |
1 | 57 | 57 | 57 | 57 | 57 |
2 | 60 | 60 | 60 | 60 | 60 |
3 | 65 | 65 | 65 | 65 | 65 |
4 | 72 | 71 | 71 | 71 | 71 |
5 | 85 | 74 | 74 | 74 | 74 |
6 | 104 | 75 | 75 | 75 | 76 |
7 | 130 | 75 | 75 | 75 | 77 |
8 | 169 | 75 | 75 | 75 | 77 |
9 | 216 | 75 | 75 | 75 | 78 |
10 | 267 | 75 | 75 | 76 | 78 |
11 | 319 | 75 | 75 | 76 | 78 |
12 | 365 | 75 | 75 | 76 | 78 |
13 | 406 | 75 | 75 | 76 | 78 |
14 | 442 | 75 | 75 | 77 | 78 |
Period | City | Infected | Infected (Accum.) | Deaths (Accum.) | |||
---|---|---|---|---|---|---|---|
MAPE | NRMSE | MAPE | NRMSE | MAPE | NRMSE | ||
Lockdown | 11.44% | 0.197 | 11.03% | 0.467 | 13.38% | 0.895 | |
2.79% | 0.322 | 18.06% | 0.789 | 13.76% | 0.952 | ||
1.73% | 1.006 | 6.91% | 0.281 | 14.39% | 1.218 | ||
After lockdown | 11.96% | 0.639 | 10.79% | 0.757 | 2.77% | 0.298 | |
2.68% | 0.617 | 10.73% | 0.627 | 2.61% | 0.369 | ||
1.96% | 1.185 | 3.75% | 0.270 | 21.13% | 3.103 |
Period | City | Infected | Infected (Accum.) | ||
---|---|---|---|---|---|
MAPE | NRMSE | MAPE | NRMSE | ||
Lockdown | 19.23% | 0.208 | 26.87% | 1.372 | |
7.36% | 0.112 | 24.11% | 1.233 | ||
34.39% | 0.474 | 32.67% | 1.010 | ||
After lockdown | 61.24% | 0.614 | 18.13% | 1.892 | |
47.52% | 0.472 | 17.40% | 1.244 | ||
77.85% | 0.745 | 23.80% | 1.596 |
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Ferreira, R.S.; Casaca, W.; Meyer, J.F.C.A.; Colnago, M.; Dias, M.A.; Negri, R.G. Epidemic Modeling in Satellite Towns and Interconnected Cities: Data-Driven Simulation and Real-World Lockdown Validation. Information 2025, 16, 299. https://doi.org/10.3390/info16040299
Ferreira RS, Casaca W, Meyer JFCA, Colnago M, Dias MA, Negri RG. Epidemic Modeling in Satellite Towns and Interconnected Cities: Data-Driven Simulation and Real-World Lockdown Validation. Information. 2025; 16(4):299. https://doi.org/10.3390/info16040299
Chicago/Turabian StyleFerreira, Rafaella S., Wallace Casaca, João F. C. A. Meyer, Marilaine Colnago, Mauricio A. Dias, and Rogério G. Negri. 2025. "Epidemic Modeling in Satellite Towns and Interconnected Cities: Data-Driven Simulation and Real-World Lockdown Validation" Information 16, no. 4: 299. https://doi.org/10.3390/info16040299
APA StyleFerreira, R. S., Casaca, W., Meyer, J. F. C. A., Colnago, M., Dias, M. A., & Negri, R. G. (2025). Epidemic Modeling in Satellite Towns and Interconnected Cities: Data-Driven Simulation and Real-World Lockdown Validation. Information, 16(4), 299. https://doi.org/10.3390/info16040299