Diversity and Distribution of Deep-Sea Fishes off the Emperor Seamounts, Northwestern Pacific Ocean, with DNA Barcodes, Phylogenetic, and Biogeographic Considerations
Abstract
1. Introduction
2. Materials and Methods
2.1. Geographic Coverage
2.2. Sampling Conditions
2.3. Morphology
2.4. Faunistic Analysis
2.5. Molecular Analysis
3. Results
3.1. Family Etmopteridae
3.1.1. Centroscyllium excelsum Shirai et Nakaya, 1990 (Figure 2A)

3.1.2. Etmopterus cf. lailae Ebert, Papastamatiou, Kajiura et Wetherbee, 2017 (Figure 2B)
3.1.3. Etmopterus pusillus (Lowe, 1839) (Figure 2C)
3.2. Family Pentanchidae
Apristurus fedorovi Dolganov, 1983 (Figure 2D)
3.3. Family Congridae
Gnathophis johnsoni Prokofiev, Frable, Emelianova, Orlova (Saveleva) et Orlov, 2025 (Figure 2E)
3.4. Family Nettastomatidae
Nettastoma parviceps Günther, 1877 (Figure 2F)
3.5. Family Synaphobranchidae
3.5.1. Meadia abyssalis (Kamohara, 1938) (Figure 3A)

3.5.2. Simenchelys parasitica Gill, 1879 (Figure 3B)
3.6. Family Nemichthyidae
Nemichthys scolopaceus Richardson, 1848 (Figure 3C)
3.7. Family Bathylagidae
3.7.1. Lipolagus ochotensis (Schmidt, 1938) (Figure 3D)
3.7.2. Melanolagus bericoides (Borodin, 1929) (Figure 3E)
3.8. Family Platytroctidae
Sagamichthys abei Parr, 1953 (Figure 3F)
3.9. Family Gonostomatidae
3.9.1. Diplophos orientalis Matsubara, 1940 (Figure 4A)

3.9.2. Sigmops elongatus (Günther, 1878)
3.9.3. Sigmops gracilis (Günther, 1878)
3.9.4. Cyclothone atraria Gilbert, 1905 (Figure 4B)
3.10. Family Sternoptychidae
3.10.1. Maurolicus imperatorius Parin et Kobyliansky, 1993 (Figure 4C)
3.10.2. Argyropelecus affinis Garman, 1899 (Figure 4D)
3.10.3. Argyropelecus sladeni Regan, 1908
3.10.4. Polyipnus matsubarai Schultz, 1961 (Figure 4E)
3.10.5. Sternoptyx diaphana Hermann, 1781 (Figure 4F)
3.11. Family Phosichthyidae
Ichthyococcus elongatus Imai, 1941 (Figure 11A)

3.12. Family Stomiidae
3.12.1. Chauliodus gr. sloani Bloch et Schneider, 1801 (Figure 11B)
3.12.2. Eustomias (Biradiostomias) securicula Prokofiev et Orlov, 2022
3.12.3. Melanostomias valdiviae Brauer, 1902
3.12.4. Opostomias mitsuii Imai, 1941 (Figure 11C)
3.12.5. Idiacanthus antrostomus Gilbert, 1890
3.12.6. Malacosteus niger Ayres, 1848 (Figure 11D)
3.13. Family Paraulopidae
Paraulopus filamentosus (Okamura, 1982) (Figure 11E)
3.14. Family Chlorophthalmidae
Chlorophthalmus imperator Fujiwara, Wada et Motomura, 2019 (Figure 11F)
3.15. Family Scopelarchidae
Benthalbella infans Zugmayer, 1911 (Figure 14A)

3.16. Family Neoscopelidae
Neoscopelus cf. macrolepidotus Johnson, 1863 (Figure 14B)
3.17. Family Myctophidae
3.18. Family Moridae
3.18.1. Lepidion inosimae (Günther, 1887) (Figure 14C)
3.18.2. Physiculus cynodon Sazonov, 1986 (Figure 14D)
3.19. Family Melanonidae
Melanonus zugmayeri Norman, 1930 (Figure 14E)
3.20. Family Macrouridae
3.20.1. Bathygadus antrodes (Jordan et Gilbert, 1904)
3.20.2. Coelorinchus matsubarai Okamura, 1982 (Figure 17A)

3.20.3. Nezumia obliquata (Gilbert, 1905) (Figure 17B)
3.20.4. Nezumia cf. proxima (Smith et Radcliffe, 1912) (Figure 17C)
3.20.5. Squalogadus modificatus Gilbert et Hubbs, 1916
3.21. Family Lophiidae
Lophiodes bruchius Caruso, 1981 (Figure 17D)
3.22. Family Oneirodidae
Bertella idiomorpha Pietsch, 1973 (Figure 17E)
3.23. Family Linophrynidae
Linophryne arborifera Regan, 1925 (Figure 18)

3.24. Family Centriscidae
Macroramphosus gracilis (Lowe, 1839) (Figure 19A)

3.25. Family Polymixiidae
Polymixia sp. (Figure 19B)
3.26. Family Melamphaidae
Scopeloberyx malayanus (Weber, 1913)
3.27. Family Berycidae
Beryx splendens Lowe, 1834 (Figure 19C)
3.28. Family Trachichthyidae
Hoplostethus crassispinus Kotlyar, 1980 (Figure 19D)
3.29. Family Sebastidae
3.29.1. Adelosebastes latens Eschmeyer, Abe et Nakano, 1979 (Figure 19E)
3.29.2. Helicolenus avius Abe et Eschmeyer, 1972 (Figure 20A)

3.30. Family Plectrogeniidae
Bembradium roseum Gilbert, 1905 (Figure 20B)
3.31. Family Rhamphocottidae
Marukawichthys pacificus Yabe, 1983 (Figure 20C)
3.32. Family Liparidae
Psednos kaganovskii Prokofiev et Orlov, 2025 (Figure 20D)
3.33. Family Howellidae
Howella parini Fedoryako, 1976 (Figure 20E)
3.34. Family Epigonidae
Epigonus denticulatus Dieuzeide, 1950 (Figure 20F)
3.35. Family Pentacerotidae
Pentaceros wheeleri (Hardy, 1983) (Figure 23A)

3.36. Family Bramidae
Brama japonica Hilgendorf, 1878 (Figure 23B)
3.37. Family Chiasmodontidae
Pseudoscopelus altipinnis Parr, 1933 (Figure 23C)
3.38. Family Trichiuridae
Benthodesmus pacificus Parin et Becker, 1970 (Figure 23D)
3.39. Family Zoarcidae
Lycodapus imperatorius Prokofiev, Balanov, Emelianova, Orlov et Orlova, 2022 (Figure 23E)
3.40. Family Pleuronectidae
3.40.1. Microstomus bathybius (Gilbert, 1890) (Figure 26A)

3.40.2. Microstomus shuntovi Borets, 1983 (Figure 26B)
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Station No. | Seamount | Date | Latitude, N | Longitude, E | Depth, m | Bottom Temperature, °C |
|---|---|---|---|---|---|---|
| 101 | Koko | 9 April 2019 | 35°10′ | 171°46′ | 383–387 | 10.4 |
| 102 | 35°01′ | 171°47′ | 353–358 | 10.6 | ||
| 103 | 35°19′ | 171°44′ | 347–359 | 10.8 | ||
| 104 | 35°17′30″ | 171°35′ | 291 | 11.7 | ||
| 105 | 10 April 2019 | 35°16′ | 171°23′30″ | 353–357 | 10.7 | |
| 106 | 35°24′30″ | 171°31′30″ | 344–336 | 10.6 | ||
| 107 | Annei (Lira) | 11 April 2019 | 36°47′30″ | 171°23′ | 643–649 | 4.9 |
| 108 | 36°47′30″ | 171°23′ | 642–653 | 4.7 | ||
| 109 | Ojin | 12 April 2019 | 37°57′ | 170°24′ | 1030 | 3.35 |
| 110 | Jingu | 14 April 2019 | 38°42′ | 171°07′ | 820 | 3.8 |
| Species | Laboratory DNA Sample Number (IORAS Voucher Specimen Number) | GenBank Accession Number | Sequence Length (bp) | Comments |
|---|---|---|---|---|
| Etmopteridae | ||||
| Etmopterus cf. lailae | 19 (P.05030) | PX647299 | 717 | First barcode-flagged and public sequences for this species |
| 63 (P.04998) | PX647313 | 717 | ||
| 64 (P.04998) | PX647314 | 717 | ||
| 65 (P.04998) | PX647315 | 717 | ||
| 66 (P.04998) | PX647316 | 717 | ||
| 67 (P.04998) | PX647317 | 717 | ||
| Etmopterus pusillus | 119 (P.05024) | PX647323 | 721 | |
| 120 (P.05024) | PX647324 | 721 | ||
| 121 (P.05024) | PX647325 | 721 | ||
| Congridae | ||||
| Gnatophis johnsoni | 70 (P.04999) | PV455848 | 618 | [24] |
| 71 (P.04999) | PV455851 | 618 | ||
| 72 (P.04999) | PV455850 | 618 | ||
| 73 (P.04999) | PV455849 | 618 | ||
| 74 (P.04999) | PV455847 | 618 | ||
| Bathylagidae | ||||
| Lipolagus ochotensis | 45 (P.05058) | PX647307 | 678 | |
| A74 (P.05032) | PX647344 | 468 | ||
| Melanolagus bericoides | 108 (P.05033) | PX660574 | 463 | We could not receive a good COI sequence from this sample, but we obtained the first public sequence of the Cyt b gene fragment |
| Gonostomatidae | ||||
| Sigmops elongatus | 44 (P.03668) | PX647306 | 677 | |
| Sigmops gracilis | A77 (P.03669) | PX647346 | 614 | |
| A79 (P.03669) | PX647347 | 430 | ||
| Cyclothone atraria | A80 (P.05035) | PX647348 | 622 | |
| Sternoptychidae | ||||
| Maurolicus imperatorius | A9 (P.05020) | PX647338 | 717 | First barcode-flagged and public sequence for this species |
| A11 (P.05020) | PX647339 | 717 | ||
| A12 (P.05020) | PX647340 | 717 | ||
| Argyropelecus affinis | A81 (P.05036) | PX647349 | 619 | |
| Polyipnus matsubarai | 16 (P.05015) | PX647298 | 608 | |
| Sternoptyx diaphana | A75 (P.05038) | PX647345 | 614 | |
| Stomiidae | ||||
| Chauliodus sloani | 43 (P.05060) | PX647305 | 539 | These sequences represent a separate lineage (possible cryptic species) within the C. sloani complex |
| A51 (P.05068) | PX647342 | 539 | ||
| A52 (P.05068) | PX647343 | 539 | ||
| Melanostomias valdiviae | 86 (P.05051) | PX647320 | 610 | |
| Opostomias mitsui | 13 (P.05069) | PX647297 | 539 | |
| Chlorophthalmidae | ||||
| Chlorophthalmus imperator | 48 (P.05011) | PX647308 | 611 | First barcode-flagged and public sequence for this species |
| 50 (P.05011) | PX647309 | 613 | ||
| Neoscopelidae | ||||
| Neoscopelus cf. macrolepidotus | 127 (S.0114) | PX647326 | 613 | |
| 128 (S.0114) | PX647327 | 613 | ||
| Moridae | ||||
| Lepidion inosimae | 53 (P.05042) | PX647311 | 659 | |
| Macrouridae | ||||
| Bathygadus antrodes | A7 (M.00109) | PX647337 | 726 | |
| Coelorinchus matsubarae | 7 (M.00109-001) | PX647291 | 722 | First barcode-flagged and public sequence for this species |
| 8 (M.00109-003) | PX647292 | 722 | ||
| 9 (M.00109-004) | PX647293 | 722 | ||
| 10 (M.00109-002) | PX647294 | 722 | ||
| 11 (M.00109-005) | PX647295 | 722 | ||
| Nezumia obliquata | 23 (M.00107-003) | PX647300 | 703 | First barcode-flagged and public sequence for this species |
| 24 (M.00107-002) | PX647301 | 703 | ||
| Nezumia cf. proxima | 25 (M.00107-001) | PX647302 | 474 | |
| Squalogadus modificatus | A18 (not catalogued) | PX647341 | 601 | |
| Lophiidae | ||||
| Lophioides bruchius | 56 (P.05002) | PX647312 | 679 | First barcode-flagged and public sequence for this species |
| Oneirodidae | ||||
| Bertella idiomorpha | 100 (P.05043) | PX647321 | 662 | |
| Macroramphosidae | ||||
| Macroramphosus gracilis | 5 (P.05021) | PX647289 | 680 | |
| Sebastidae | ||||
| Adelosebastes latens | 134 (P.05055) | PX647328 | 452 | First barcode-flagged and public sequence for this genus and species |
| 135 (P.05055) | PX647329 | 421 | ||
| Helicolenus avius | 137 (P.05005) | PX647330 | 675 | |
| 138 (P.05005) | PX647331 | 675 | ||
| 139 (P.05005) | PX647332 | 675 | ||
| 140 (P.05005) | PX647333 | 675 | ||
| Plectrogeniidae | ||||
| Bembradium roseum | 6 (P.05022) | PX647290 | 620 | |
| 26 (P.05013) | PX647303 | 620 | ||
| Howellidae | ||||
| Howella parini | 36 (P.05063) | PX647304 | 666 | Although it is the first barcode-flagged sequence for this species, it forms a single unique lineage with “Bathysphyraenops simplex” (likely misidentification; OR582658, no locality data) |
| 147 (P.05044) | PX647334 | 590 | ||
| 148 (P.05044) | PX647335 | 590 | ||
| 150 (P.05044) | PX647336 | 616 | ||
| Epigonidae | ||||
| Epigonus denticulatus | A100 (P.05008) | PX647350 | 664 | |
| Bramidae | ||||
| Brama japonica | 52 (P.05009) | PX647310 | 677 | |
| Chiasmodontidae | ||||
| Pseudoscopelus altipinnis | 107 (P.05045) | PX647322 | 684 | First barcode-flagged and public sequence for this species |
| Trichiuridae | ||||
| Benthodesmus pacificus | 12 (P.05018) | PX647296 | 614 | Although it is the first barcode-flagged sequence for this species, it is identical to the samples GU805059/DSFSF394-09 and KF489506/DSFSG511-11 from South Africa identified as B. simonyi |
| 68 (P.05010) | PX647318 | 640 | ||
| Zoarcidae | ||||
| Lycodapus imperatorius | 89 (P. 03641) | OP759467 | 582 | [26] |
| Pleuronectidae | ||||
| Microstomus shuntovi | 69 (P.05029) | PX647319 | 590 | |
| Species | Annei | Koko | Ojin | Jingu | Remarks |
|---|---|---|---|---|---|
| Centroscyllium excelsum (B) | + | ||||
| Etmopterus cf. lailae (B) | + | ||||
| Apristurus fedorovi (B) | + | ||||
| Gnathophis johnsoni (B) | + | Newly described species | |||
| Nettastoma parviceps (B) | + | ||||
| Meadia abyssalis (B) | + | ||||
| Simenchelys parasitica (B) | + | ||||
| Nemichthys scolopaceus (P) | + | ||||
| Lipolagus ochotensis (P) | + | + | |||
| Melanolagus bericoides (P) | + | + | First record for the area | ||
| Sagamichthys abei (B) | + | ||||
| Diplophos orientalis (P) | + | ||||
| Sigmops elogatus (P) | + | ||||
| Sigmops gracilis (P) | + | ||||
| Cyclothone atraria (P) | + | ||||
| Argyropelecus affinis (P) | + | First record for the area | |||
| Argyropelecus sladeni (P) | + | ||||
| Sternoptyx diaphana (P) | + | ||||
| Ichthyococcus elongatus (P) | + | ||||
| Eustomias securicula (P) | + | Newly described species | |||
| Melanostomias valdiviae (P) | + | ||||
| Opostomias mitsuii (P) | + | ||||
| Idiacanthus antrostomus (P) | + | ||||
| Malacosteus niger (P) | + | ||||
| Benthalbella infans (P) | + | ||||
| Diaphus balanovi (B) | + | + | Newly described species | ||
| Neoscopelus cf. macrolepidotus (B) | + | ||||
| Lepidion inosimae (B) | + | ||||
| Melanonus zugmayeri (P) | + | First record for the area | |||
| Bathygadus antrodes (B) | + | ||||
| Nezumia obliquata (B) | + | ||||
| Nezumia cf. proxima (B) | + | First record for the area | |||
| Squalogadus modificatus (B, P) | + | First record for the area | |||
| Bertella idiomorpha (P) | + | First record for the area | |||
| Linophryne arborifera (P) | + | First record for the Pacific Ocean | |||
| Macroramphosus gracilis (P) | + | ||||
| Scopeloberyx malayanus (P) | + | First record for the area | |||
| Bembradium roseum (B) | + | ||||
| Psednos kaganovskii (P) | + | Newly described species | |||
| Howella parini (B, P) | + | + | |||
| Pseudoscopelus altipinnis (P) | + | ||||
| Benthodesmus pacificus (B, P) | + | ||||
| Lycodapus imperatorius (P) | + | + | Newly described species | ||
| Microstomus bathybius (B) | + | + |
| Seamounts | Nintoku | Jingu | Ojin | Koko | Milwaukee |
|---|---|---|---|---|---|
| Nintoku | |||||
| Jingu | 68.57 | ||||
| Ojin | 57.14 | 63.16 | |||
| Koko | 17.91 | 25.71 | 28.57 | ||
| Milwaukee | 11.76 | 16.90 | 22.54 | 67.96 | |
| Annei | 35.90 | 42.86 | 52.38 | 40.54 | 37.33 |
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M. Prokofiev, A.; R. Emelianova, O.; Y. Saveleva, S.; M. Orlov, A. Diversity and Distribution of Deep-Sea Fishes off the Emperor Seamounts, Northwestern Pacific Ocean, with DNA Barcodes, Phylogenetic, and Biogeographic Considerations. J. Mar. Sci. Eng. 2026, 14, 63. https://doi.org/10.3390/jmse14010063
M. Prokofiev A, R. Emelianova O, Y. Saveleva S, M. Orlov A. Diversity and Distribution of Deep-Sea Fishes off the Emperor Seamounts, Northwestern Pacific Ocean, with DNA Barcodes, Phylogenetic, and Biogeographic Considerations. Journal of Marine Science and Engineering. 2026; 14(1):63. https://doi.org/10.3390/jmse14010063
Chicago/Turabian StyleM. Prokofiev, Artem, Olga R. Emelianova, Svetlana Y. Saveleva, and Alexei M. Orlov. 2026. "Diversity and Distribution of Deep-Sea Fishes off the Emperor Seamounts, Northwestern Pacific Ocean, with DNA Barcodes, Phylogenetic, and Biogeographic Considerations" Journal of Marine Science and Engineering 14, no. 1: 63. https://doi.org/10.3390/jmse14010063
APA StyleM. Prokofiev, A., R. Emelianova, O., Y. Saveleva, S., & M. Orlov, A. (2026). Diversity and Distribution of Deep-Sea Fishes off the Emperor Seamounts, Northwestern Pacific Ocean, with DNA Barcodes, Phylogenetic, and Biogeographic Considerations. Journal of Marine Science and Engineering, 14(1), 63. https://doi.org/10.3390/jmse14010063

