1. Introduction
Mitochondria are among the most complex organelles in the cell and serve as the central hub of cellular energy metabolism. In addition to producing the majority of cellular ATP, mitochondria regulate cytosolic Ca
2+ concentrations and reactive oxygen species (ROS) production, thereby modulating intracellular signaling pathways [
1,
2]. They also play a crucial role in the execution of apoptosis [
3]. Furthermore, when intracellular energy levels decline—such as under glucose deprivation—mitochondria can be selectively eliminated via mitophagy to help maintain cellular energy homeostasis [
4,
5].
In recent years, a growing body of research has demonstrated that isolated mitochondria can exert protective effects beyond the cell of origin. Exogenous mitochondrial administration has been reported to alleviate cellular injury in various contexts, including myocardial ischemia–reperfusion injury [
6], glial cells at spinal cord injury sites [
7], dexamethasone-induced muscle atrophy models [
8], amyloid β-induced neuronal death [
9], and inflammation in THP-1 macrophage-like cells [
10]. Moreover, the detection of mitochondrial fragments in the bloodstream [
11] suggests that extracellular mitochondria may also play physiologically relevant roles. Studies investigating the mechanisms by which isolated mitochondria mitigate cellular damage have primarily focused on intracellular changes. Reported effects include enhanced oxygen consumption [
6,
7,
8,
12,
13], increased ATP production [
8,
14,
15], and reduced ROS generation [
8,
12,
16]. These findings support the idea that exogenous mitochondria improve oxidative stress conditions and activate mitochondrial energy metabolism. Additionally, internalized mitochondria have been shown to promote mitophagy in recipient cells, further contributing to their protective effects [
17]. In addition to such intracellular effects, recent studies have begun to investigate the intrinsic properties of isolated mitochondria that determine their protective potential. It has been reported that structurally damaged or inactivated mitochondria lose their ability to confer protection or exhibit markedly reduced efficacy [
6,
13,
15,
16,
18]. However, the importance of outer membrane integrity, which likely plays a key role in the interaction between exogenous mitochondria and recipient cells—remains poorly understood.
We recently developed a modified mitochondrial isolation method that yields structurally intact mitochondria, preserving both the outer and inner membranes [
19]. Compared to mitochondria isolated by conventional homogenization, these mitochondria exhibit similar ATP-producing capacity via the electron transport chain but retain a more intact outer membrane and preserve intermembrane space proteins. In this study, we used both types of mitochondria to evaluate how outer membrane integrity influences cellular responses in H9c2 cardiomyoblasts, including cell survival, ATP production, and protection against oxidative damage. Our findings demonstrate that mitochondria with intact outer membranes are less prone to irreversible functional damage under extracellular conditions and more effectively enhance cellular resistance to oxidative stress.
2. Materials and Methods
2.1. Materials
C6 rat glioma cell line (accession number: CVCL 0194) and HEK293 (accession number: CVCL 0045) cells were purchased from Riken Cell Bank (Wako, Japan). H9c2 (accession number: CRL-1446) was obtained from ATCC (Manassas, VA, USA). Roswell Park Memorial Institute Medium 1640 (RPMI 1640; Cat#: 31800022) and Dulbecco’s Modified Eagle’s Medium (DMEM; Cat#: 1196092) were purchased from Gibco (Grand Island, NY, USA), and Minimum Essential Medium (MEM; Cat#: 21443-15) was purchased from Nacalai Tesque (Kyoto, Japan). Fetal Bovine Serum (FBS) (Cat#: 173012, Lot#: BCBZ5432) was purchased from Nichirei Bioscience Inc. (Tokyo, Japan). Tetramethylrhodamine ethyl ester (TMRE) (Cat#: T669) and MitoSox Red (Cat#: M36008) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). BCA protein assay kit (Cat#: 23225) and digitonin (Cat#: 043-21376) were purchased from Thermo Scientific (Rockford, IL, USA) and FUJIFILM Wako Pure Chemical (Osaka, Japan), respectively. pAcGFP1-Mito Vector (Cat#: 632432), Lipofectamine 3000 (Cat#: L3000015), and G418, Geneticin® (Cat#: 10131027) were obtained from Takara Bio (Shiga, Japan), Invitrogen (Carlsbad, CA, USA), and Thermo Fisher Scientific (Tokyo, Japan), respectively. Non-essential amino acids (NEAA; Cat#: 139-15651) and horse radish peroxidase (Cat#: 9166-12881) were purchased from FUJIFILM Wako Pure Chemical (Osaka, Japan). NAD/NADH Assay Kit-WST (Cat#: 950-190-3725) and Cell Counting Kit-8 (Cat#: NC0314243) were obtained from Dojindo Laboratories (Kumamoto, Japan). CellTiter-Glo® Luminescent Cell Viability Assay kit (Cat#: G7571/2/3) and Amplex Red reagent (Cat#: A360060) were obtained from Promega (Fitchburg, WI, USA) and Thermo Fisher Scientific (Waltham, MA, USA), respectively. All other chemicals used were of the highest available purity.
2.2. Cell Culture Preparation
H9c2 rat cardiac myoblast cells were cultured in DMEM supplemented with 10% FBS, 200 IU/mL penicillin, and 100 μg/mL streptomycin, at 37 °C in a humidified atmosphere containing 5% CO2. These cells were used as a cardiac muscle cell model. Cells were routinely maintained in polystyrene culture dishes. For experiments involving microscopic observation, cells were seeded on collagen-coated glass-bottom dishes (GBDs) and cultured for 2–3 days prior to analysis. For plate-based assays, 96-well polystyrene plates were used.
C6 rat glioma cells were cultured in RPMI 1640 medium supplemented with 10% FBS, under the same incubation conditions (37 °C, 5% CO2, humidified atmosphere). These cells were used as the source of mitochondria due to their rapid proliferation and suitability for mitochondrial activity studies.
HEK293 cells were cultured in MEM supplemented with 10% FBS and 0.1 mM non-essential amino acids, also under standard incubation conditions (37 °C, 5% CO2). These cells were selected for experiments requiring stable protein expression.
2.3. Stable Expression of Mitochondrial GFP
To generate mitochondria labeled with green fluorescent protein (GFP), HEK293 cells were transfected with the pAcGFP1-Mito Vector, which encodes a GFP variant targeted to mitochondria via a mitochondrial localization signal. Transfection was performed using Lipofectamine 3000 according to the manufacturer’s protocol. Stable cell lines were established by selection with 400 μg/mL G418 for 14 days. GFP-positive colonies were isolated and expanded, and mitochondrial localization of GFP was confirmed by confocal fluorescence microscopy.
2.4. Isolation of Mitochondria
Two distinct methods were employed to isolate mitochondria from cultured C6 or HEK293 cells expressing GFP in mitochondria: the iMIT method to obtain mitochondria with preserved outer membranes (Imit), and the HBM method to obtain mitochondria with partially disrupted outer membranes (Hmit) [
19]. For the iMIT method, cells cultured to ~80% confluence in 150 mm dishes were washed with Tris-sucrose buffer (10 mM Tris-HCl, 250 mM sucrose, 0.5 mM EGTA, pH 7.4). Cells were then incubated with 9 mL of the same buffer containing 30 μM digitonin at 4 °C for 3 min. After washing and a further 10-min incubation in Tris-sucrose buffer at 4 °C, cells were gently detached by pipetting and collected. The suspension was centrifuged at 500×
g for 10 min at 4 °C to remove debris, and the supernatant was further centrifuged at 3000×
g for 10 min at 4 °C to collect mitochondria. For the HBM method, cells were scraped into buffer and centrifuged at 200×
g for 5 min at 25 °C to remove mitochondria released from damaged cells. The pellet was resuspended and homogenized (40 strokes, 4 °C) using a Teflon homogenizer (clearance between pestle and tube cylinder: 0.15 mm). Subsequent centrifugation steps were identical to the iMIT procedure. Importantly, both mitochondrial preparations retained high functional activity, as demonstrated by their capacity for ATP synthesis and electron transport linked to membrane potential formation [
19]. The protein concentration of the obtained mitochondrial suspension was determined with the BCA protein assay kit with BSA as a standard. After isolation, mitochondria were immediately frozen in liquid nitrogen and stored at −80 °C. Before use, frozen mitochondria were rapidly thawed and used within one month of preparation to minimize potential loss of mitochondrial functionality associated with repeated freeze–thaw exposure [
19]. When observing isolated mitochondria adsorbed onto a GBD, 1 mL of mitochondrial suspension (0.03 mg protein/mL) was centrifuged onto a GBD (35 mm in diameter) at 100×
g for 5 min at 4 °C. The mitochondria were then washed with Tris-sucrose buffer.
2.5. Detection of MPT Occurrence
Mitochondrial permeability transition (MPT) refers to a sudden increase in the permeability of the inner mitochondrial membrane to solutes up to ~1.5 kDa, typically triggered by elevated Ca
2+ concentrations [
20,
21]. At the single-mitochondrion level, MPT can be detected by monitoring the abrupt loss of calcein fluorescence from mitochondria preloaded with calcein, as previously described [
22].
To label mitochondria with calcein, the adhered mitochondria were incubated with 3 μM calcein-AM in a loading buffer containing 10 mM Tris-HCl, 250 mM sucrose, 0.5 mM EGTA, 2 mM KH2PO4, and 0.1 mg/mL BSA (pH 7.4) for 30 min at 25 °C. After incubation, the samples were washed twice with a buffer lacking BSA and bathed in 3 mL of Tris-sucrose buffer with 2 mM KH2PO4 (pH 7.4) for imaging.
The dish was then placed on a microscope stage maintained at 25 °C and remained stationary throughout the observation period to avoid positional shifts during imaging. Calcein fluorescence was monitored using an inverted epifluorescence microscope (IX-73, Olympus, Tokyo, Japan) equipped with a 20× objective lens (UPlanXApo, NA = 0.8) and a 75 W xenon light source. Excitation was set to 470–495 nm, and emission was collected at 515–550 nm using a cooled CCD camera (MD-695, Molecular Device Japan, Tokyo, Japan) with 2 × 2 binning. Each image was captured with a 1 s exposure. To minimize phototoxic effects, light intensity was reduced to 6% using a neutral density filter. Fluorescence images were acquired every 2 min for a total of 20 min. At t = 5 min, 2 mL of Tris-sucrose buffer was gently removed from the dish and replaced with 2 mL of FBS to induce MPT. According to the information provided by the supplier, the total calcium concentration in FBS is approximately 3.6 mM. Although the exact free Ca
2+ concentration in FBS is not directly provided, considering that in human serum the total calcium and free Ca
2+ concentrations are approximately 2.32 mM and 1.41 mM, respectively [
23], we estimate that the free Ca
2+ concentration in FBS is likely to exceed 1.4 mM. To quantify the occurrence of MPT, we monitored changes in calcein fluorescence intensity within individual mitochondria over time. The fluorescence was measured as the integrated calcein signal across each mitochondrion. A mitochondrion was considered to have undergone MPT if its calcein fluorescence intensity decreased by more than 20% compared to its initial value within any given 2-min interval. The percentage of mitochondria undergoing MPT was calculated based on this criterion.
2.6. Measurement of Mitochondrial Swelling
Mitochondrial swelling, characterized by an increase in matrix volume, is frequently observed following MPT [
24,
25]. Swelling was assessed by measuring changes in light transmittance, as previously described [
26]. Transmitted light images of individual mitochondria adsorbed onto GBDs were acquired using the same inverted epifluorescence microscope described above. For this measurement, a 40× objective lens (Uapo 40×/340; NA = 0.90; Olympus) was used with 2 × 2 binning.
To capture three-dimensional data, a z-stack of 20 images was acquired at 0.2 μm intervals along the
z-axis, yielding a complete image stack within one minute. This stack acquisition was repeated at appropriate time intervals. The illumination wavelength was set at 546 nm using a 10 nm bandpass filter. To quantify light transmittance through individual mitochondria, the average intensity over a 0.46 μm
2 region of each mitochondrion was determined from each image. The lowest intensity across the 20 slices was selected and divided by the average intensity of a blank area adjacent to the mitochondrion to calculate the transmittance ratio. Among the 20 images, the lowest ratio was taken as the transmittance for that mitochondrion. A mitochondrion was considered to have undergone swelling if its transmittance change exceeded 0.16 [
26].
2.7. Measurement of Total NAD/NADH Content in Mitochondria
To assess whether MPT induces the release of NAD and NADH from mitochondria, isolated mitochondria were incubated at a concentration of 100 μg/mL in 3 mL of either FBS or Tris-sucrose buffer at 37 °C for 15 min. After incubation, mitochondria were pelleted by centrifugation at 8000× g for 10 min at 4 °C. To remove residual FBS components, the pellet was washed twice—first by resuspension in Tris-sucrose buffer followed by centrifugation at 3000× g for 10 min at 4 °C, and then by resuspension in PBS followed by a second centrifugation under the same conditions. The final pellet was used for quantification of total NAD and NADH using the NAD/NADH Assay Kit-WST, according to the manufacturer’s protocol. Absorbance at 450 nm was measured using a SpectraMax iD3 microplate reader (Molecular Devices, San Jose, CA, USA) to compare NAD/NADH content between mitochondria incubated in FBS and those in Tris-sucrose buffer.
2.8. Induction of Oxidative Damage and Mitochondrial Administration in H9c2 Cells
We compared the effects of two types of mitochondria, Imit and Hmit, on H9c2 cells. The target cells were prepared under three different conditions depending on the timing of oxidative stress induction: (1) without H2O2 treatment, (2) co-treatment with H2O2 and mitochondria, and (3) treatment with H2O2 for 2 h followed by washout and subsequent mitochondrial administration. In all experiments, H9c2 cells were seeded after passage onto either 96-well polystyrene microplates or collagen-coated GBD and cultured for 48 h before use. Mitochondria were administered at a dosage of 0.23 ng per cell, calculated based on the cell number at the time of seeding.
For conditions without H2O2, cells were seeded at 1000 cells per well in 96-well plates and 15,000 cells per dish in GBDs. After 48 h of culture, mitochondria were added. For conditions with H2O2, cells were seeded at 4000 cells per well (96-well plates) or 40,000 cells per dish (GBD), and after 48 h of culture, H2O2 was added. Two experimental protocols were used for H2O2 treatment: in one, H2O2 and mitochondria were added simultaneously and cultured; in the other, H2O2 was added for 2 h, washed out, and then mitochondria were administered.
2.9. Measurements of Dehydrogenase Activity
The total dehydrogenase (DH) activity of the entire cell population within a single well of a 96-well microplate was measured using the Cell Counting Kit-8, following the manufacturer’s instructions [
27]. Absorbance at 450 nm was recorded using the aforementioned microplate reader.
2.10. Measurements of ATP Levels
The total ATP content of the entire cell population within a single well of a 96-well microplate was measured using the CellTiter-Glo® Luminescent Cell Viability Assay Kit, according to the manufacturer’s instructions. Luminescence was measured using the aforementioned microplate reader.
2.11. Quantification of Adherent Cell Numbers
To evaluate changes in the number of adherent H9c2 cells during 24-h incubation independently of intracellular enzymatic activity, the number of cells attached to the bottom of each well in a 96-well plate was measured both before and after incubation. The ratio of the post-incubation cell number to the pre-incubation cell number was then calculated for each well. Because cell density varies by field of view, it was essential to observe the same region before and after incubation. When viewed under a phase-contrast microscope, a distinctive dark region is consistently visible at the center of each well (
Supplementary Figure S1), enabling reproducible positioning of the same field. A square region of 0.4 mm
2 centered on this structure was used as the observation area. Transmitted light images for cell counting were acquired using the same inverted microscope system described above, equipped with a 10× phase-contrast objective lens (UPlanFLN, NA = 0.30). Cell numbers were counted visually based on these images. Only cells clearly attached to the well bottom were included in the count, whereas shrunken dead cells and non-adherent cells were excluded. For each experimental condition, six wells were analyzed per replicate, and the experiment was independently repeated at least three times.
2.12. Evaluation of Mitochondrial Membrane Potential
To evaluate mitochondrial membrane potential, H9c2 cells and isolated mitochondria from C6 cells were stained with tetramethylrhodamine ethyl ester (TMRE), as previously described [
19]. Briefly, H9c2 cells were incubated with 20 nM TMRE in HEPES-buffered saline (10 mM HEPES, 120 mM NaCl, 4 mM KCl, 0.5 mM MgSO
4, 1 mM NaH
2PO
4, 4 mM NaHCO
3, 25 mM glucose, 1.2 mM CaCl
2, and 0.1% BSA, pH 7.4) at 37 °C for 10 min in the presence of 1 mg/mL BSA. Isolated mitochondria adsorbed onto GBDs, as well as mitochondria within plasma membrane-permeabilized cells [
28], were stained with 10 nM TMRE in Tris-sucrose buffer at 25 °C for 10 min [
19,
26].
Immediately prior to observation, samples were placed on the stage of an inverted epifluorescence microscope (as described above). A 40× objective lens was used to observe isolated mitochondria, while a 10× objective lens was used for intracellular mitochondria. TMRE fluorescence was excited with light in the 510–550 nm range generated by a 75 W xenon lamp, and emitted light >580 nm was captured with a cooled CCD camera using 2 × 2 binning. Each frame was exposed for 1 s. To minimize photodynamic damage, illumination intensity was reduced to 1.5% using a neutral-density filter. Fluorescence signals were recorded at 25 °C, digitized at 14-bit resolution, and analyzed using MetaMorph software (version 7.8; Universal Imaging, Downingtown, PA, USA). The integrated fluorescence intensity in a cell was analyzed [
29].
2.13. Evaluation of Mitochondrial Internalization
To evaluate the internalization of exogenously added mitochondria, we used mitochondria isolated from HEK293 cells stably expressing GFP targeted to the mitochondrial inner membrane (as described in
Section 2.3). These GFP-labeled mitochondria were co-incubated with H9c2 cells in RPMI 1640 medium supplemented with 10% fetal bovine serum at 37 °C in a 5% CO
2 incubator for either 1, 2, or 24 h. After incubation, cells were stained with 10 nM TMRE to label polarized mitochondria and imaged using a MAICO
® MEMS confocal unit (C15890 series, Hamamatsu Photonics, Hamamatsu, Japan) attached to the side port of an Olympus IX-73 inverted epifluorescence microscope. Confocal images were acquired using a 60× oil-immersion objective lens (UPlanXApo, NA = 1.42). Excitation/emission settings were 488 nm/510–540 nm for GFP and 561 nm/580–619 nm for TMRE. Laser power was set to 50%, and images were captured with a high-sensitive DaAsP photomultiplier tube. Overlay images were generated by merging GFP (green) and TMRE (red) signals; regions exhibiting both signals (yellow) were interpreted as polarized mitochondria (
Supplementary Figure S2A).
The number of internalized mitochondria per cell was quantified using GFP fluorescence images acquired by epifluorescence microscopy (
Supplementary Figure S2B). For epifluorescence imaging, the same IX-73 microscope was used with a 40× air objective lens (UPlanSApo, NA = 0.95), as previously described in
Section 2.5. For each cell, the total intracellular GFP fluorescence intensity was measured, and the background fluorescence, obtained from a region within the same cell lacking visible GFP-labeled mitochondria, was subtracted. This value was defined as I
cell.GFP. To estimate the average fluorescence intensity of a single mitochondrion, extracellular mitochondria were identified in cell-free regions using transmitted light imaging. Particles with diameters of 0.5–3 μm that exhibited distinct GFP fluorescence were defined as individual mitochondria. The fluorescence intensities of 50 such mitochondria were measured, and their mean value was defined as I
mit.GFP. The number of internalized mitochondria per cell was calculated by dividing I
cell.GFP by I
mit.GFP. All image analyses were performed using the aforementioned software.
2.14. Evaluation of Electron Transport Chain (ETC) Activity
To evaluate electron transport chain (ETC) activity in intracellular mitochondria, H9c2 cells were permeabilized with 30 µM digitonin [
28] and stained with 20 nM TMRE in Tris-KCl buffer (10 mM Tris-HCl, 70 mM KCl, 110 mM sucrose, 0.5 mM EGTA, pH 7.4) supplemented with 1 mM KH
2PO
4, 0.5 mM ADP (KH
2ADP), 1 mM MgCl
2·6H
2O, and 1 mg/mL BSA. Fluorescence images were acquired using the same inverted epifluorescence microscope described in
Section 2.12. A total of 10 images were captured at 1-min intervals. Between the acquisition of the third and fourth images, 5 mM malate was added to the medium to stimulate the ETC, and the resulting changes in TMRE fluorescence intensity were monitored to assess mitochondrial activity. The integrated fluorescence intensity in a cell was analyzed using the aforementioned software according to Hirusaki et al. [
29].
2.15. Detection of Reactive Oxygen Species (ROS) Generation in Cells
To assess mitochondrial ROS production, H9c2 cells were stained with 2.5 μM MitoSOX™ Red, a mitochondrial superoxide-specific fluorescent probe, in HEPES-buffered saline for 10 min at 25 °C [
29,
30]. Fluorescence images were acquired and analyzed using the same methods described in
Section 2.12.
2.16. Measurement of H2O2 Concentration in the Medium
To evaluate whether isolated mitochondria reduce extracellular H
2O
2, we measured the H
2O
2 concentration in culture medium using the Amplex™ Red Hydrogen Peroxide/Peroxidase Assay Kit [
31], following the manufacturer’s instructions. In each well of a 96-well microplate, 10 μL of 720 μM H
2O
2 and 100 μL of DMEM were added, followed by the addition of 10 μL of mitochondrial suspension (160 μg/mL) or Tris buffer as a control. This resulted in a final volume of 120 μL per well, with a starting H
2O
2 concentration of 60 μM and a mitochondrial protein amount of 1.6 μg/well. The mixtures were incubated for 50 min at 37 °C in a humidified 5% CO
2 incubator. After incubation, the samples were diluted 5-fold with PBS to ensure that H
2O
2 levels fell within the quantifiable range. A calibration curve was prepared using serial dilutions of standard H
2O
2 solutions. For the assay, 50 μL of each diluted sample was mixed with 50 μL of a working solution containing 0.1 mM Amplex Red and 0.2 U/mL horseradish peroxidase. The reaction mixtures were incubated for 10 min at 37 °C. Fluorescence intensity was measured at 545 nm excitation and 590 nm emission using the aforementioned microplate reader, and H
2O
2 concentrations were calculated based on the standard curve.
2.17. Statistical Analysis
All experiments were performed using isolated mitochondria and H9c2 cells obtained from at least three independent preparations. Data are presented as the mean ± standard error of the mean (SEM). Statistical comparisons were performed using two-tailed analysis of variance (ANOVA), followed by the Student–Newman–Keuls post hoc test. Differences were considered statistically significant at p < 0.05.
4. Discussion
Administration of exogenous mitochondria to H2O2-damaged cells led to reduced intracellular ROS levels, enhanced electron transport chain (ETC) activity, and an increased number of viable cells. These effects were accompanied by a rapid elevation in intracellular ATP levels and dehydrogenase activities. Both types of mitochondria—Imit, which retains an intact outer membrane, and Hmit, which has partially damaged outer membranes—were capable of scavenging H2O2 in the culture medium to a similar extent. Among the two, Imit was more efficiently internalized by cells and conferred greater cell survival under severe oxidative stress. In contrast, no significant differences were observed between Imit and Hmit in terms of their effects on ATP elevation, dehydrogenase activation, intracellular ROS suppression, or ETC activity restoration.
Previous studies have demonstrated that exogenous mitochondria can enhance energy metabolism [
8,
14], reduce ROS levels [
8,
16], and suppress cell death in damaged cells [
6,
14,
15]. Our present findings are consistent with these reports. However, unlike a prior study reporting that freeze–thawed mitochondria lack protective activity [
6], our results demonstrate that cryopreserved mitochondria can retain sufficient function to exert protective effects. The mitochondria used in this study were frozen in small aliquots and rapidly thawed to minimize loss of function [
19], which may explain their preserved activity. These results support the notion that the therapeutic efficacy of mitochondrial transplantation depends on the functional integrity of the administered mitochondria [
6,
13,
15].
The internalized mitochondria observed in this study were spherical and did not fuse with endogenous mitochondria. This is likely because they were depolarized, a state known to inhibit mitochondrial fusion [
35], and their small, spherical shape makes further fission unlikely. Although some reports have suggested fusion between exogenous and endogenous mitochondria, these studies often rely on fluorescent dye labeling, which may be confounded by dye leakage rather than true fusion events [
36]. Thus, whether internalized isolated mitochondria truly fuse with endogenous mitochondria remains a matter of debate.
Given that these mitochondria neither synthesize ATP nor fuse with endogenous mitochondria, how might they contribute to the recovery of cellular function? We propose four possible mechanisms:
1. Direct delivery of antioxidant proteins: Mitochondria contain antioxidant enzymes such as glutathione peroxidase and superoxide dismutase (SOD) [
37], which can be delivered into cells even when the mitochondria have lost membrane potential. As shown in this study, isolated mitochondria exhibit ROS-scavenging capacity, suggesting that this mechanism can operate both intracellularly and extracellularly.
2. Induction of signaling pathways: Mitochondria and their released components may interact with cells either extracellularly or intracellularly to induce the expression of antioxidant-related proteins or to modulate various signaling pathways [
38].
3. Mitophagy-mediated functional enhancement: Mitochondria with depolarized inner membranes accumulate PINK1 on their outer membrane, making them preferred targets for mitophagy. Their small, spherical morphology may also facilitate sequestration by autophagosomes. It has been hypothesized that the clearance of internalized mitochondria through mitophagy can activate mitochondrial biogenesis and ultimately improve cellular function [
17].
4. Metabolic support independent of membrane potential: Even depolarized mitochondria may retain certain metabolic activities that do not depend on membrane potential, potentially supporting cellular metabolism.
In this study, we observed that exogenous mitochondria were taken up by recipient cells via what appears to be macropinocytosis, consistent with previous reports [
13,
34]. However, the detailed subclassification of this pathway and the exact intracellular fate of the internalized mitochondria remain to be fully elucidated. Although internalized mitochondria do not fuse with endogenous mitochondria, they may still promote cellular recovery through multiple mechanisms. Further studies will be necessary to clarify the relative contributions and detailed molecular mechanisms of these processes.
A notable finding in this study is that Imit improved cell survival more effectively than Hmit under conditions of severe oxidative stress. Imit and Hmit differ in four key characteristics: (A) enhanced internalization, (B) facilitation of mitophagy, (C) preservation of residual metabolic activity, and (D) contribution of intermembrane and outer membrane proteins. The potential contributions of these factors are discussed below.
A. Enhanced internalization: Mitochondria with a more intact outer membrane, such as Imit, were internalized more efficiently by recipient cells. This observation is consistent with previous findings [
13,
15,
16]. A greater number of internalized mitochondria may result in stronger protective effects through intracellular mechanisms.
B. Facilitation of mitophagy: The PINK1/Parkin pathway is activated when PINK1 accumulates on the outer membrane of depolarized mitochondria [
39]. Mitochondria with intact outer membranes are better substrates for this pathway, promoting their selective removal by mitophagy. This process can stimulate mitochondrial turnover and contribute to cellular recovery.
C. Preservation of activity: According to Bertero et al. [
40], isolated mitochondria rapidly lose function when exposed to high-calcium environments, particularly in the presence of complex I substrates such as pyruvate or malate, which fail to induce repolarization under such conditions. In our study, however, succinate—a complex II substrate—was still able to induce mitochondrial repolarization even after extracellular incubation. This indicates that some mitochondrial activity remains preserved despite depolarization, at least in pathways independent of complex I. Notably, this repolarization capacity was retained for a longer period in Imit than in Hmit, suggesting that Imit better preserves mitochondrial function under extracellular stress. Based on this, it is plausible that Imit also retains higher levels of other membrane potential-independent metabolic activities, which may contribute to its enhanced protective effects.
D. Contribution of intermembrane space and outer membrane proteins: Imit retains more intermembrane space proteins due to its intact outer membrane [
19]. Moreover, a larger proportion of Imit underwent swelling compared to Hmit. Such swelling may promote rupture of the outer membrane and facilitate the release of intermembrane space proteins. Upon release, these proteins may exert significant effects on cells both intracellularly and extracellularly. In addition, for example, intermembrane space proteins such as SOD1 [
41] can enhance superoxide scavenging, and outer membrane proteins like VDAC3 may also contribute to antioxidant functions [
42].
Regarding why the differences between cytoprotection by Imit and that by Hmit were not more pronounced, we focused on preserving ATP synthesis capacity in Hmit, which meant that we could not completely disrupt the outer membrane integrity in all Hmit samples. Consequently, the Hmit population likely contained mitochondria with partially or fully intact outer membranes, which may have reduced the observable differences at the population level. Therefore, an important advantage of the present study is that it compares Imit and Hmit with comparable inner membrane functionality but differing outer membrane integrity, allowing a focused analysis of how the outer membrane influences cellular uptake and antioxidant responses.