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Article

ALA_PDT Promotes Ferroptosis-Like Death of Mycobacterium abscessus and Antibiotic Sterilization via Oxidative Stress

by
Xiaoyu Wang
1,2,3,
Meiyin Wan
1,
Lei Zhang
3,
Yongdong Dai
3,
Yang Hai
3,
Chenda Yue
2,
Junqi Xu
3,
Yadan Ding
1,
Mei Wang
1,†,
Jianping Xie
3,*,
Xia Lei
2,* and
Julia-Li Zhong
1,*
1
Key Laboratory of Biorheological Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400044, China
2
Department of Dermatology, Daping Hospital, The Army Medical University, Chongqing 400044, China
3
Institute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Environment and Bio-Resource of the Three Gorges Area, Key Laboratory of Ministry of Education Eco-Environment of the Three Gorges Reservoir Region, College of Life and Sciences, Southwest University, Chongqing 400700, China
*
Authors to whom correspondence should be addressed.
†
Current Address: Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, Zunyi 563000, China.
Antioxidants 2022, 11(3), 546; https://doi.org/10.3390/antiox11030546
Submission received: 24 January 2022 / Revised: 6 March 2022 / Accepted: 11 March 2022 / Published: 14 March 2022
(This article belongs to the Special Issue Iron, Oxidative Stress, Skin Ageing and Disorders)
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Abstract

:
Mycobacterium abscessus is one of the common clinical non-tuberculous mycobacteria (NTM) that can cause severe skin infection. 5-Aminolevulinic acid photodynamic therapy (ALA_PDT) is an emerging effective antimicrobial treatment. To explore whether ALA_PDT can be used to treat M. abscessus infections, we conducted a series of experiments in vitro. We found that ALA_PDT can kill M. abscesses. Mechanistically, we found that ALA_PDT promoted ferroptosis-like death of M. abscesses, and the ROS scavenger N-Acetyl-L-cysteine (NAC) and ferroptosis inhibitor Ferrostatin-1 (Fer-1) can mitigate the ALA_PDT-mediated sterilization. Furthermore, ALA_PDT significantly up-regulated the transcription of heme oxygenase MAB_4773, increased the intracellular Fe2+ concentration and altered the transcription of M. abscessus iron metabolism genes. ALA_PDT disrupted the integrity of the cell membrane and enhanced the permeability of the cell membrane, as evidenced by the boosted sterilization effect of antibiotics. In summary, ALA_PDT can kill M. abscesses via promoting the ferroptosis-like death and antibiotic sterilization through oxidative stress by changing iron metabolism. The study provided new mechanistic insights into the clinical efficacy of ALA_PDT against M. abscessus.

1. Introduction

Mycobacterial infections can be divided into three main categories: (1) infections caused by Mycobacterium tuberculosis or M. bovis, (2) infections caused by M. leprae, and (3) non-tuberculous mycobacteria (NTM) infection [1]. NTMs are diverse and ubiquitous in the environment, but only very few can cause serious infections, such as M. abscesses [2]. As an emerging pathogen worldwide, M. abscesses is a rapidly growing NTM [3]. M. abscesses is resistant to most anti-tuberculosis drugs, such as macrolides, aminoglycosides, rifampicin, tetracycline and β-lactam antibiotics [1]. Multi-drug resistant M. abscessus was developed via mechanisms similar to other NTMs [4], and greatly limited the choice of antibiotics.
New measures against multi-drug resistant M. abscesses are intensively pursued, such as phage therapy [5,6], natural or synthetic antimicrobial peptide [7] and photodynamic therapy (PDT) [8]. PDT is an emerging treatment modality for diseases with the combination of photosensitive drugs and corresponding wavelengths of light. PDT can sterilize many microbes in vitro via the combination of photosensitizer and light [9]. PDT was firstly used to treat skin tuberculosis in the late 19th century by Niels Ryberg Finsen, who received the Nobel Prize for phototherapy development in 1903 [10]. Subsequently, many studies on the effect of phototherapy, photochemotherapy and PDT against bacteria were published [11]. However, the discovery and application of antibiotics dwarfed the photodynamic antibacterials [12]. PDT was revitalized largely due to the emergence of drug-resistant bacteria. 5-Aminolevulinic acid (ALA) is a second-generation photosensitizer. It is a key intermediate in the biosynthesis of protoporphyrin IX (PpIX) and heme. Excessive exogenous ALA supply resulted in PpIX accumulation, which can act as a bona fide photosensitizer under irradiation [13]. ALA_PDT has been widely used in the treatment of clinical acne, actinic keratosis, various skin diseases and cancer [14]. PDT was recognized as a promising alternative treatment for drug-resistant tuberculosis or NTMs infection [15], as evidenced by the fact that PDT can effectively inactivate M. fortuitum [16], M. bovis BCG [17], M. marinum, M. smegmatis [18] and M. tuberculosis. PDT can alleviate granulomas induced by M. bovis BCG in vivo [19]. We have previously reported that ALA_PDT can treat mycobacterial skin infection [20].
Although the exact mechanism of PDT remains unclear, the reactive oxygen species (ROS) produced by PDT might underlie its bacteriocidal effect [21]. Two oxidation mechanisms can be attributable to the production of free radicals and singlet oxygen by photodynamics [22]. These active substances can inactivate microorganisms by damaging various cellular components, possibly through the photooxidation of nucleic acids [23], proteins [24,25] and membrane lipids [26,27]. PDT can elicit single-stranded and double-stranded DNA damage in gram-positive or gram-negative bacteria, and abrogate the plasmid supercoil [28]. The DNA damage effect of PDT against bacteria might be minor to the death of microbes largely due to the presence of proficient DNA repair systems [29].
PDT can cause non-enzymatic lipid peroxidation via a distinct ferroptosis-like cell death [30]. Ferroptosis is characterized by lipid peroxidation of cell membranes under the action of iron or lipid oxidase, depleting glutathione, shrinking mitochondria and elevating membrane density [31]. Ferroptosis on eukaryotes is precisely regulated, which directly or indirectly targets iron metabolism and lipid peroxidation [32]. Ferrous and polysulfide can synergistically induce ferroptosis-like death in bacteria [33]. ROS, pivotal for PDT efficacy, can induce cell ferroptosis. However, the relationship between PDT and ferroptosis remains elusive.
We previously found that multiple antibiotics combined with ALA_PDT can successfully cure patients with skin M. abscessus infections, whose ulcer surface gradually healed without recurrence [34]. This might be due to the bactericidal effect of ALA_PDT against M. abscessus. To explore whether ALA_PDT can kill M. abscessus and the underlying mechanism of action, an in vitro bactericidal model was established. We found that ALA_PDT could kill M. abscessus by promoting ROS-mediated bacterial ferroptosis-like death. The study provided new insights into the mechanism of action of ALA_PDT efficacy against M. abscessus and opened a new avenue to treat the antibiotics-recalcitrant M. abscessus infection.

2. Materials and Methods

2.1. Strains, Plasmids and Primers

The M. abscessus ATCC19977 strain was purchased from BeNa Culture Collection (Jiangshu, China). The Escherichia coli DH5α strain is used for gene cloning, grown in Luria-Bertani (LB) agar at 37 °C and contains appropriate antibiotics. M. abscessus was grown in 7H9 liquid medium or on 7H9 agar supplemented with 0.5% (v/v) glycerol and 0.05% (v/v) Tween 80. All strains were stored at −80 °C with 10% sterilized glycerol. The pALACE plasmid was kind gift of Professor Yossef Av-Gay at the University of British Columbia. The pALACE plasmid is an E. coli-Mycobacterium shuttle plasmid with a histidine tag. It is hygromycin resistant and is usually expressed under the induction of acetamide. The M. abscessus ATCC19977 genomic DNA was extracted, and the primers were synthesized by Beijing Genomics institution (Shenzhen, China). The list of strains and plasmids used in Table 1. Primers used in Table 2.

2.2. The Effect of ALA_PDT on Bacteria Growth

The M. abscesses ATCC19977 strain was cultured in liquid 7H9 medium supplemented with 0.05% (v/v) Tween 80 and harvested when OD600 is 0.8, then adjusted OD600 to 0.1–0.2, and added the photosensitizer ALA (0–100 µg/mL). It was incubate at 37 °C for 12 h, and processed red light of 585–635 nm with different energy (0–160 J/cm2). M. abscessus was plated on 7H9 solid medium after gradient dilution, and the results were observed 4 days later. The M. abscessus ATCC19977 strain was cultured in liquid 7H9 medium supplemented with 0.05% (v/v) Tween 80 to an OD600 of about 0.8 and harvested. Then, the OD600 was adjusted to 0.1–0.2, and the photosensitizer ALA (100 µg/mL) was added at 37 °C and incubated for 12 h. The ROS scavenger N-Acetyl-L-cysteine, at a final concentration of 10mM, or the ferroptosis inhibitor Ferrostatin-1, at a final concentration of 20 µM, was added and incubated for 2 h at 37 °C, and then processed red light of 585–635 nm with different energy (80, 160 J/cm2). M. abscessus was diluted and inoculated on 7H9 solid medium, cultured in a constant temperature incubator at 37 °C, and the colonies were observed 4 days later.

2.3. ROS Measurement

Ctrl, PDT1, PDT2, PDT1 + NAC, PDT2 + NAC, PDT1 + Fer-1, PDT2 + Fer-1 (Ctrl: 0 µg/mL ALA + 0 J/cm2 light, PDT1: 100 µg/mL ALA + 80 J/cm2 light, PDT2: 100 µg/mL ALA + 160 J/cm2 light, PDT1 + NAC: 100 µg/Ml ALA + 80 J/cm2 light + 10 mM NAC, PDT2 + NAC: 100 µg/mL ALA + 160 J/cm2 light + 10 mM NAC, PDT1 + Fer-1: 100 µg/mL ALA + 80 J/cm2 light + 20 µM Ferrostatin-1, PDT2 + Fer-1: 100 µg/mL ALA + 160 J/cm2 light + 20 µM Ferrostatin-1) were centrifuged at 6800× g 10 min, the pellet was washed with 1×PBS 3 times, the OD600 was adjusted to about 0.4 and the ROS level was measured with a ROS Assay kit (Beyotime, Shanghai, China).

2.4. DNA Damage Measurement

Ctrl, PDT1 and PDT2 bacteria were collected by centrifugation, the pellet was washed 3 times in pre-cooled 1×PBS, adjusted OD600 = 0.8, took 500 μL of bacteria and added 500 μL of pre-cooled 4% paraformaldehyde. The bacteria were fixed for 30 min, the bacteria were collected, the pellet was washed 3 times with 1×PBS, bacteria were resuspended in 500 μL pre-cooled permeabilization solution, incubated at room temperature for 5 min and harvested by centrifugation. The pellet was washed with 1×PBS 3 times, and then measured according to the instruction of the One Step TUNEL Apoptosis Assay kit (Beyotime, Shanghai, China).

2.5. Lipid Peroxidation Assay

The same amount of Ctrl, PDT1 and PDT2 bacteria was harvested, sonicated and centrifuged for 10 min at 6800× g and 4 °C. The supernatant was collected and placed on ice. Lipid peroxidation MDA Assay kit (Beyotime, Shanghai, China) was used for lipid peroxidation measurement.

2.6. Determination of Fe2+ Content in Bacteria

The same amount of Ctrl, PDT1 and PDT2 bacteria was harvested by centrifugation at 6800× g at 4 °C centrifugation for 10 min and sonicated. The resulting supernatant was collected and placed on ice. QuantichromTM iron detection kit (BioAssay Systems, Hayward, CA, USA) was used; the supernatant was incubated at room temperature for 40 min and a microplate reader (Molecular Device, San Jose, CA, USA) was used to read the optical density (peak absorbance at 590 nm) at wavelengths of 510–630 nm.

2.7. Determination of ATP Content in Bacteria

The Ctrl, PDT1 and PDT2 bacteria ATP content were measured with the ATP Assay kit (Beyotime, Shanghai, China) and the multifunctional microplate reader (Tecan, Männedorf, Switzerland).

2.8. Bacteria Intracellular NADH and NAD+ Determination

The bacteria content of NADH or NAD+ is detected by the Coenzyme I NAD (H) content detection kit (Solarbio, Beijing, China), and OD readings were performed with the microplate reader (Molecular Device, San Jose, CA, USA) at 570 nm.

2.9. RNA-seq

The Ctrl, PDT1 and PDT2 bacteria were harvested for RNA preparation. As mentioned before [35], RNA-seq is measured by Zhongke New Life (Shanghai, China). The original image data files obtained by high-throughput sequencing are converted into original sequenced reads (Sequenced Reads) by CASAVA base calling (Base Calling) analysis. The transcriptome sequencing (RNA-seq) data are aligned with the genome of the M. abscess ATCC 19977 in NCBI, and the gene expression level is estimated by the number of reads. To make it comparable between different genes or samples, the number of reads is converted to a counts value for normalization of gene expression. Gene expression data (accession number GSE193092) has been submitted to GEO (GENE EXPRESSION OMNIBUS).

2.10. qRT-PCR

For Ctrl, PDT1, and PDT2 strains, mRNA was collected and transcribed into cDNA. The following thermal cycling parameters were utilized for the PCR reaction (Bio-Rad IQ5): 95 °C for 5 min and 40 cycles, 95 °C for 30 s, 58 °C for 30 s and 72 °C for 30 s. Melting curve analysis was used to assess amplification specificity. The gene expression level was normalized to the sigA gene transcription level. The average relative expression level and standard deviation were determined from three independent experiments.

2.11. Construction of MAB_Vec and MAB_4773 Recombinant M. abscessus

M. abscessus ATCC 19977 genomic DNA was used as a template to amplify the MAB_4773 gene. The PCR product and the vector plasmid pALACE were digested to produce recombinant MAB_4773. All plasmids were electroporated into M. abscessus. After 15 h of in vitro growth in 7H9 liquid medium, the electroporated M. abscessus strain was inoculated on 7H9 agar containing hygromycin and cultured in a constant temperature incubator at 37 °C for 4–5 days.

2.12. Drug Resistance Analysis

Ctrl, PDT1, and PDT2 bacteria were collected and washed with 1×PBS buffer three times. The pellet was re-suspended in 7H9 medium, adjusted to OD600 of 0.4, followed by an addition of Nor: Norfloxacin 80, 160, 240 μg/mL, Cip: Ciprofloxacin 80, 160, 240 μg/mL, 10, 20, 30 μg/mL Cla: clarithromycin, 20, 40, 60 μg/mL and Min: Minocycline for 24 h pre-treatment. Bacterial suspensions were gradually diluted and treated bacteria were spread on 7H9 agar and incubated at 37 °C for 4 days.

2.13. Bacterial Membrane Integrity Test

To confirm the effect of ALA_PDT on the integrity of bacterial cell membranes, LIVE/DEAD® BacLightTM Bacterial Viability Kit L13152 (Thermo Fisher Scientific, Waltham, MA, USA) was used. SYTO 9 stain generally marks all the bacteria in the population, including those with intact or damaged cell membranes. Bacteria with intact cell membranes are more likely to stain fluorescent green. The excitation/emission maximum of these dyes is about 480/500 nm for SYTO 9 stain.

2.14. Nile Red Experiment

Ctrl, PDT1, and PDT2 bacteria were harvested and washed three times with PBST buffer (0.05% Tween80 added to 1×PBS). The pellet was resuspended in 7H9 medium, adjusted to an OD600 of 0.8, and 200 µL of bacterial suspension was added to a clean 96-well plate. Nile Red was added to corresponding wells to make sure their final concentrations were 2 µM. A multifunctional microplate reader (Tecan, Männedorf, Switzerland). was used to detect the fluorescence intensity every five min by setting the excitation spectrum to 544 nm and the emission spectrum to 590 nm.

2.15. Statistical Analysis

The experiment was carried out in triplicate. Prism 6 and Student’s t-test were used to analyze the differences between groups. *** p < 0.001, ** p < 0.01, * p < 0.05; n.s. is not significant; means ± standard deviation from at least three biological replicates.

3. Results

3.1. ALA_PDT Can Kill M. abscessus In Vitro

ALA_PDT was previously reported to be able to inactivate a variety of bacteria in vitro, including mycobacteria [36]. To conclude whether ALA_PDT can kill M. abscesses, we first performed the sterilization experiment on M. abscesses in vitro. It was found that neither the photosensitizer ALA nor red light could kill M. abscesses (Figure 1a,b). A combination of photosensitizer and red light, PDT1 (100 µg/mL ALA + 80 J/cm2 red light) or PDT2 (100 µg/mL ALA + 160 J/cm2 red light) light eliminated M. abscessus in vitro in a dose-dependent manner (Figure 1c). The results demonstrated that ALA_PDT could kill M. abscessus in vitro.

3.2. ALA_PDT Promoted Ferroptosis-Like Death of M. abscessus

To further to explore the mechanism underlying the effect of ALA_PDT on M. abscessus, we compared the related parameters in the Ctrl, PDT1 and PDT2, such as Fe2+ content, ROS level, DNA damage, lipid peroxidation, ATP amount and NAD+/NADH ratio. The results demonstrated that PDT1 and PDT2 significantly increased the Fe2+ content (Figure 2a), ROS level (Figure 2b), DNA damage (Figure 2c) and lipid peroxidation (Figure 2d) in the bacteria than the Ctrl. PDT lowered the ATP content (Figure 2e) and the NAD+/NADH ratio compared to control bacteria (Figure 2f). The data indicated that ALA_PDT might promote a ferroptosis-like death of M. abscessus by modulate the ferroptosis-related molecules.

3.3. ALA_PDT Promoted the Ferroptosis-Like Death of M. abscessus by Inducing the Production of ROS in Bacteria

To confirm the role of ferroptosis-like death in ALA_PDT effect on M. abscessus, ROS scavenger NAC and ferroptosis inhibitor Fer-1 were added before ALA_PDT. The antioxidant effect of NAC is mainly to quench ROS. Anti-ferroptotic activity of fer-1 is actually due to the scavenging of initiating alkoxyl radicals produced by Fe2+ from lipid hydroperoxides [37]. The results demonstrated that NAC decreased the production of ROS and rescued M. abscessus from death by ALA_PDT (Figure 3a,b), indicating that ALA_PDT played a role in the death of M. abscessus through the production of ROS. Fer-1 treatment can also reduce the production of ROS and bacteria killing by ALA_PDT (Figure 3c,d). The results demonstrated that ALA_PDT promoted M. abscessus ferroptosis-like death, not only via increasing the production of ROS, but also related to the change of the Fe2+ concentration in the bacteria.

3.4. ALA_PDT Up-Regulated the Transcriptional Level of Heme Oxygenase MAB_4773

To further define the specific mechanism of action underlying the effect of ALA_PDT on M. abscessus, transcriptome of M. abscessus after PDT1 or PDT2 was determined by RNA-sequencing. The results demonstrated that PDT1 significantly affected the transcription of 118 M. abscessus genes, of which 68 genes were up-regulated and 50 genes were down-regulated. The KEGG pathway enrichment analysis demonstrated that the ALA_PDT-regulated genes are involved in multiple metabolic processes (Figure 4a). Some genes are: nitrogen metabolism-related genes, MAB_4344c and MAB_3522c; porphyrin metabolism-related genes, MAB_2986c and MAB_4773; arginine biosynthesis; alanine, aspartic acid and glutamate metabolism-related genes, MAB_4344c, valine and leucine; and isoleucine degradation-related genes, MAB_4539c. PDT2 significantly changed the transcription of 220 genes, of which 113 genes were up-regulated and 107 genes were down-regulated. PDT2 changed the genes involved in the biosynthesis and metabolism of amino acids, such as the degradation of valine, leucine, isoleucine and lysine, the biosynthesis of arginine and the metabolism of alanine, aspartate and glutamate (Figure 4b). There are 63 genes demonstrating the same change trend upon PDT1 or PDT2 treatment. The detailed results are shown in Figure 4c. The amino acid metabolism and ferroptosis pathways are significantly enriched in PDT1 or PDT2 differentially regulated genes, such as heme oxygenase, MAB_4773. The results indicate that ALA_PDT may alter the metabolism of amino acids and ferroptosis. Heme oxygenase is involved in the ferroptosis of cells [38]. The transcription of heme oxygenase-encoding gene MAB_4773 in M. abscessus was significantly up-regulated after ALA_PDT (Figure 4d), which might be important in the promotion of ferroptosis-like death of M. abscessus by ALA_PDT.

3.5. ALA_PDT Promoted Bacterial Ferroptosis-Like Death by MAB_4773

Heme oxygenase (HO) is the rate-limiting enzyme of heme catabolism, which can decompose heme to produce biliverdin, CO and Fe2+ (Figure 5a). HO-mediated iron release is the major intracellular source of labile iron; HO is involved in the ferroptosis of cells [38]. In order to prove the important role of MAB_4773 in the ferroptosis-like death caused by ALA_PDT, we overexpressed MAB_4773 in vitro. The results demonstrated that MAB_4773 overexpression recombinant M. abscesses did accumulate higher Fe2+ (Figure 5b), consistent with ALA_PDT causing ferroptosis-like death by up-regulating the transcription of MAB_4773. Heme oxygenase MAB_4773, bacterial ferritin MAB_0126c, low-affinity iron permease MAB_2517c and other genes related to bacterial iron metabolism were also up-regulated in the transcriptome (Figure 5c), consistent with in vitro qRT-PCR results (Figure 5d). The results demonstrated that ALA_PDT can alter M. abscessus intracellular iron metabolism by up-regulating the transcription of MAB_4773, thereby promoting bacteria ferroptosis-like death.

3.6. ALA_PDT Disrupts the Integrity of the Cell Membrane and Potentiates the Sterilization of Antibiotics

We next explored whether a combination of ALA_PDT and antibiotics can reduce NTM infections, or whether ALA_PDT can boost the efficacy of antibiotics against M. abscessus. We compared the effect of antibiotics on bacteria with or without ALA_PDT treatment in vitro. The results demonstrated that ALA_PDT potentiated the killing effect of antibiotics, such as norfloxacin, ciprofloxacin, clarithromycin, and minocycline, against M. abscessus (Figure 6a–d). Ferroptosis was reported to disrupt cell membrane integrity [39]. We speculated that the cell membrane integrity corruption might underlie the potentiation effect of antibiotics. To confirm this, SYTO 9 dye was used to detect the integrity of the cell membrane. We found that ALA_PDT significantly reduced the integrity of the cell membrane (Figure 6e). Subsequent permeability change might underlie the potentiation of antibiotics. The dye Nile Red test demonstrated that ALA_PDT did increase the permeability of cell membranes (Figure 6f). In summary, ALA_PDT reduced the integrity and increased the permeability of the cell membrane, resulting in a boost of the antibiotic effect on M. abscessus.

4. Discussion

We demonstrated that ALA_PDT can kill M. abscessus and promote the sterilization effect of antibiotics by promoting ferroptosis-like death of M. abscessus. This provided a new mechanistic understanding as to the efficacy of ALA_PDT against M. abscessus, and rationale for ALA_PDT in clinical treatment of M. abscessus infection.
We firstly demonstrated that ALA_PDT could kill M. abscessus through bactericidal experiments in vitro, followed by demonstrating that ALA_PDT can promote M. abscessus ferroptosis-like death. By using ROS quenchers and ferroptosis inhibitors, we found that ALA_PDT could promote M. abscessus ferroptosis-like death by increasing the production of ROS. RNA-seq transcriptome demonstrated that ALA_PDT up-regulated the transcription of genes involved in iron metabolism, including heme oxygenase MAB_4773. MAB_4773 overexpression recombinant increases the amount of Fe2+, further confirming that MAB_4773 can promote M. abscessus ferroptosis-like death by affecting bacterial iron metabolism and engaging in ALA_PDT. ALA_PDT can potentiate the efficacy of multiple antibiotics, largely via changing the M. abscessus cell membrane permeability.
The bactericidal effect of ALA_PDT was previously documented [14,40], but the underlying mechanism of action remains elusive. Mycobacteria can reprogram its metabolism to adapt with the dynamic host environment [41], such as oxidative stress. We found that ALA_PDT can promote bacterial ferroptosis-like death by producing ROS, and affect the bacterial iron metabolism by up-regulating the transcription of MAB_4773 via a hitherto unknown mechanism of action. This study supplies new insights into the bactericidal mechanism of ALA_PDT. For the first time, we linked the ferroptosis-like death with the bactericidal mechanism of ALA_PDT. ALA_PDT killed bacteria by ROS generated in or near the bacteria. However, we firstly propose that ALA_PDT causes bacterial ferroptosis-like death by promoting the production of ROS. Heme oxygenase can directly alter the bacteria’s ability to resist oxidative damage [42,43] and is related to ferroptosis [44]. Bacterial heme oxygenase function was largely assigned to the degradation of heme [45,46]. M. abscessus contains a heme oxygenase, MAB_4773. We found that ALA_PDT up-regulated heme oxygenase MAB_4773 and is directly related to the production of ROS. Whether ALA_PDT can change the M. abscessus heme quantity, and how this functions in the bactericidal effect, remains to be determined. We found that ALA_PDT may alter the iron metabolism of bacteria by up-regulating the transcription of MAB_4773, thereby promoting M. abscessus ferroptosis-like death. However, how MAB_4773 specifically affects iron metabolism and ferroptosis-like death in M. abscessus warrants further study. The presence of heme oxygenase in other bacteria [47] implicates that ALA_PDT might have wider application for bacterial infection.
M. abscessus infection is an emerging public health concern with its intrinsic drug resistance, which necessitates the prolonged administration of multiple antibiotics [48], which greatly limited the choice of treatments [49]. We found that ALA_PDT reduced the drug resistance of M. abscessus by increasing the permeability of the cell membrane. This may underlie the broad-spectrum efficacy of ALA_PDT in combination with antibiotics. ALA_PDT might be a potentiating factor of antibiotics against other bacterial infections. Though very few antibiotics, such as norfloxacin, ciprofloxacin, clarithromycin and minocycline, were included in this study, other antibiotics in the clinical guidance can be further tested.
M. abscessus causes a large number of infections worldwide, often with underestimated disease burden. Multidrug resistant (MDR) and extensive drug resistant (XDR) pathogens have become a serious threat to public health [50]. The rapid increase in antibiotic resistant bacteria has neutralized the efficacy of many antibiotics. Many NTM infections are characterized by relapse and drug resistance [51]. ALA_PDT is safe and easy to implement, and effective against bacteria [52], fungi [53], viruses [54,55] and protozoa [56,57]. Compared with conventional antibiotics, ALA_PDT acts rapidly and can even sterilize drug resistant strains [58,59]. This broad-spectrum effect might have an important role in the treatment of emerging infectious diseases. ALA_PDT for M. abscessus treatment is not routine in clinical practice. Our study provides new options and rationale for the treatment of M. abscessus infections with ALA_PDT. The study of the mechanism of ALA_PDT killing M. abscessus can inspire the use of ALA_PDT against other mycobacteria infection, and even more pathogens. Further animal experiments and clinical experiments are needed to support the wider application of ALA_PDT.
We found that the same dose of ALA_PDT can damage cells; whether this damage will affect the application of ALA_PDT requires further experiments in eukaryotic cells and mice. The detailed pathway and genes involved shall be further explored to define the molecular basis, and to establish the utility of ALA_PDT in clinical practice.

5. Conclusions

In conclusion, although our study is limited to in vitro experiments, this well demonstrated that ALA_PDT could kill M. abscessus and promoted the sterilization effect of antibiotics by promoting ferroptosis-like death. Meanwhile, we demonstrated that ALA_PDT could promote ferroptosis-like death in M. abscessus by increasing ROS production, which may alter bacterial iron metabolism by up-regulating the transcription of MAB_4773. Disruption of the cell membrane integrity can be elicited by ALA_PDT, accompanied by bacterial ferroptosis-like death. This might have broader applications for the ALA_PDT potentiating effect on antibiotics.

Author Contributions

Conceptualization, X.W.; methodology, Julia-Li Zhong, J.X. (Jianping Xie) and X.L.; validation, X.W., M.W. (Meiyin Wan), L.Z., Y.D. (Yongdong Dai), Y.H., C.Y., J.X. (Junqi Xu) and Y.D. (Yadan Ding); formal analysis, X.W., M.W. (Meiyin Wan), L.Z. and Y.D. (Yongdong Dai); investigation, X.W., M.W. (Meiyin Wan), L.Z. and Y.D. (Yongdong Dai); resources, X.W.; writing—original draft preparation, X.W., J.-L.Z., J.X. (Jianping Xie) and X.L.; writing—review and editing, X.W., Julia-Li Zhong, J.X. (Jianping Xie), X.L. and M.W. (Mei Wang); visualization, Julia-Li Zhong; supervision, Julia-Li Zhong; funding acquisition, Julia-Li Zhong, J.X. (Jianping Xie), X.L. and J.X. (Junqi Xu). All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by National Natural Science Foundation of China (81773348, 82072246, 81871182), 2020 Chongqing Post-Doctoral Research Project Special Funding (7820100597). The Science and Technology Plan Project of Guizhou Province (ZK-2021-565). The Initial Research Funds for Ph.D. in Zunyi Medical University (2018-5772-072) and 2020 City-School Joint Project (2018-5772-066) (to Mei Wang).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data presented in this study are available in this manuscript.

Conflicts of Interest

The authors declare that they have no conflict of interest.

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Figure 1. ALA_PDT can kill M. abscessus in vitro. (a) The effects of different concentrations of ALA on the growth of M. abscesses. (b) The effects of red light in different intensity on the growth of M. abscessus. (c) The effects of different concentrations of ALA_PDT on the growth of M. abscessus. (*** p < 0.001 and means ± standard deviation from at least three biological replicates).
Figure 1. ALA_PDT can kill M. abscessus in vitro. (a) The effects of different concentrations of ALA on the growth of M. abscesses. (b) The effects of red light in different intensity on the growth of M. abscessus. (c) The effects of different concentrations of ALA_PDT on the growth of M. abscessus. (*** p < 0.001 and means ± standard deviation from at least three biological replicates).
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Figure 2. ALA_PDT promoted ferroptosis-like death of M. abscessus. (a) Determination of the total amount of Fe2+ in M. abscessus after ALA_PDT. (b) ROS level. (c) The degree of DNA damage. (d) Lipid peroxidation. (e) ATP content. (f) NAD+/NADH ratio. (*** p < 0.001, ** p < 0.01, * p < 0.05 and means ± standard deviation from at least three biological replicates).
Figure 2. ALA_PDT promoted ferroptosis-like death of M. abscessus. (a) Determination of the total amount of Fe2+ in M. abscessus after ALA_PDT. (b) ROS level. (c) The degree of DNA damage. (d) Lipid peroxidation. (e) ATP content. (f) NAD+/NADH ratio. (*** p < 0.001, ** p < 0.01, * p < 0.05 and means ± standard deviation from at least three biological replicates).
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Figure 3. ALA_PDT inhibited the growth of M. abscessus by promoting ROS production. (a) Intracellular ROS content of ALA_PDT and ROS scavenger NAC in M. abscessus. (b) Effects of ALA_PDT and ROS scavenger NAC on the growth of M. abscessus. (c) Intracellular ROS content of ALA_PDT and ferroptosis inhibitor Fer-1 in M. abscessus. (d) Effects of ALA_PDT and ferroptosis inhibitor Fer-1 on the growth of M. abscessus. (*** p < 0.001, ** p < 0.01, * p < 0.05, n.s. is not significant and means ± standard deviation from at least three biological replicates).
Figure 3. ALA_PDT inhibited the growth of M. abscessus by promoting ROS production. (a) Intracellular ROS content of ALA_PDT and ROS scavenger NAC in M. abscessus. (b) Effects of ALA_PDT and ROS scavenger NAC on the growth of M. abscessus. (c) Intracellular ROS content of ALA_PDT and ferroptosis inhibitor Fer-1 in M. abscessus. (d) Effects of ALA_PDT and ferroptosis inhibitor Fer-1 on the growth of M. abscessus. (*** p < 0.001, ** p < 0.01, * p < 0.05, n.s. is not significant and means ± standard deviation from at least three biological replicates).
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Figure 4. Transcriptome change of M. abscessus upon ALA_PDT. (a) Transcriptome KEGG pathway enrichment analysis of Ctrl and PDT1. (b) Transcriptome KEGG pathway enrichment analysis of Ctrl and PDT2. (c) Venn diagram of PDT1 and PDT2; the number of genes that change in the transcriptome of M. abscessus. (d) Heat map of related genes that change together in the transcriptome of Ctrl, PDT1 and PDT2.
Figure 4. Transcriptome change of M. abscessus upon ALA_PDT. (a) Transcriptome KEGG pathway enrichment analysis of Ctrl and PDT1. (b) Transcriptome KEGG pathway enrichment analysis of Ctrl and PDT2. (c) Venn diagram of PDT1 and PDT2; the number of genes that change in the transcriptome of M. abscessus. (d) Heat map of related genes that change together in the transcriptome of Ctrl, PDT1 and PDT2.
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Figure 5. MAB_4773 affects iron metabolism in M. abscessus. (a) Heme oxygenase decomposes heme. (The figure only presents the Fe2+ generation). (b) The Fe2+ level of MAB_Vec and MAB_4773. (c) Heat map of transcription levels of iron metabolism-related genes. (d) qRT-PCR results of transcription levels of iron metabolism-related genes. (*** p < 0.001 and means ± standard deviation from at least three biological replicates).
Figure 5. MAB_4773 affects iron metabolism in M. abscessus. (a) Heme oxygenase decomposes heme. (The figure only presents the Fe2+ generation). (b) The Fe2+ level of MAB_Vec and MAB_4773. (c) Heat map of transcription levels of iron metabolism-related genes. (d) qRT-PCR results of transcription levels of iron metabolism-related genes. (*** p < 0.001 and means ± standard deviation from at least three biological replicates).
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Figure 6. ALA_PDT potentiated antibiotics effect against M. abscessus. (a–d) ALA_PDT increases antibiotic sterilization against M. abscessus. (e) The cell membrane integrity of M. abscessus. (f) The Nile Red fluorescent dye accumulation in M. abscessus. (Nor: Norfloxacin, Cip: Ciprofloxacin, Cla: clarithromycin and Min: Minocycline. *** p < 0.001 and means ± standard deviation from at least three biological replicates).
Figure 6. ALA_PDT potentiated antibiotics effect against M. abscessus. (a–d) ALA_PDT increases antibiotic sterilization against M. abscessus. (e) The cell membrane integrity of M. abscessus. (f) The Nile Red fluorescent dye accumulation in M. abscessus. (Nor: Norfloxacin, Cip: Ciprofloxacin, Cla: clarithromycin and Min: Minocycline. *** p < 0.001 and means ± standard deviation from at least three biological replicates).
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Table
Table 1. The list of strains and plasmids used in the study.
Table 1. The list of strains and plasmids used in the study.
StrainsDescription of StrainsSource
WTWild type M. abscessus ATCC 19977 strainThis study
MAB_VecM.abscessus with transformed with vector pALACEThis study
MAB_4773M.abscessus with transformed with vector pALACE_MAB_4773This study
E. coli DH5aStrain used in vector proliferationInvitrogen
PlasmidsDescription of Plasmids
pALACEA replicative plasmid used for gene expression in M. abscessus and
conferring hygromycin (hyg) resistance
Table
Table 2. Primers used in the study.
Table 2. Primers used in the study.
PrimerDescriptionSequence of Primers (5′-3′)Gene ID
MAB_4773 FConstruct recombinant MAB_4773 strainGGAATTCCATATGATGAACGTCAGCTCTTCCACGGTTC5967230
MAB_4773 RCCATCGATCAGCGCCGGTAGGCGGTCAGATTG
MAB_4773 RT-FRT-PCRAGTCGCCGTTCATCTCCGAACTGCTTGC
MAB_4773 RT-RCGTCTTCGATGGCGGTGTAGATCATCTGTAA
MAB_0126c RT-F CACGAGTTCACGGCATCGCAGCAATACA5962669
MAB_0126c RT-R TTTTTGGGGTGTCGGTCGCGGTCAT
MAB_2517c RT-F TACCTGGCAGTTGGTCATCAACACCTTG5965027
MAB_2517c RT-R GTTGAGCTTCTGCTGGACCGCGTCATCG
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Wang, X.; Wan, M.; Zhang, L.; Dai, Y.; Hai, Y.; Yue, C.; Xu, J.; Ding, Y.; Wang, M.; Xie, J.; et al. ALA_PDT Promotes Ferroptosis-Like Death of Mycobacterium abscessus and Antibiotic Sterilization via Oxidative Stress. Antioxidants 2022, 11, 546. https://doi.org/10.3390/antiox11030546

AMA Style

Wang X, Wan M, Zhang L, Dai Y, Hai Y, Yue C, Xu J, Ding Y, Wang M, Xie J, et al. ALA_PDT Promotes Ferroptosis-Like Death of Mycobacterium abscessus and Antibiotic Sterilization via Oxidative Stress. Antioxidants. 2022; 11(3):546. https://doi.org/10.3390/antiox11030546

Chicago/Turabian Style

Wang, Xiaoyu, Meiyin Wan, Lei Zhang, Yongdong Dai, Yang Hai, Chenda Yue, Junqi Xu, Yadan Ding, Mei Wang, Jianping Xie, and et al. 2022. "ALA_PDT Promotes Ferroptosis-Like Death of Mycobacterium abscessus and Antibiotic Sterilization via Oxidative Stress" Antioxidants 11, no. 3: 546. https://doi.org/10.3390/antiox11030546

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